Array 1 76887-76680 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJP01000004.1 Cronobacter sakazakii strain cro2890W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76886 28 100.0 32 ............................ GGTGCGCAAAGCCGTTTCCAAGCTTGTCGATA 76826 28 100.0 32 ............................ ATGATATCGCAATTAAGCCAGATAGCCGGTTT 76766 28 100.0 32 ............................ CAATCCTCCCAAGCGACGTTATCTTTTTTGAC 76706 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGAGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201101-203878 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJP01000001.1 Cronobacter sakazakii strain cro2890W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201101 29 100.0 32 ............................. GACCGGTGTGGGTGCTGTGGAGCGGTGCTGGC 201162 29 100.0 32 ............................. GATACAGCGATTTATCGCTGAACCCCGTCAGA 201223 29 100.0 33 ............................. CGGCGAATAATGACGGGGCTTCGGCCCCGTTTT 201285 29 100.0 32 ............................. ATTTTAATCGTCGGTATCGGCCAATCCTTCAT 201346 29 100.0 32 ............................. TTATCGACGTGGCACGTCAATCAACTGATTTG 201407 29 100.0 32 ............................. TATTCCTTACTGAAACTACCCTCGCCTTGCGC 201468 29 100.0 32 ............................. AGCACTGGCATTAGCCTCGTCGGGGTTTTCCA 201529 29 100.0 32 ............................. TCCAGCCATGCTGCGCCGCTACGTTCTCCATT 201590 29 100.0 32 ............................. CCAGCCACCTTACATCCCGTTACTTCTGCCGA 201651 29 100.0 32 ............................. ACGTTTTGCCTTTTCCTCTTCATAGCGCTGCC 201712 29 100.0 33 ............................. GCGGTCGCGCTGCGCCATATAGTCGCCGCCTAC 201774 29 100.0 32 ............................. TTCACGCCGGCTGATAACGCAAACCGGGCGCG 201835 29 100.0 32 ............................. CTGGTCGTGTGCTGATCGTTGGCGCTTTCGGA 201896 29 100.0 32 ............................. GTTTCTTTTGCGTTGTCCGTAAGAACTGAATA 201957 29 93.1 32 .C..........T................ CATCCCATACACCGCAGATTTACCAGAAGTGT 202018 29 93.1 32 .C..........T................ AATACCGCCGTCTCTTCGTCGAGAGCAGCAGC 202079 29 96.6 32 .C........................... ACAGTATCTCCCTCTTTTTTTACGTATCGTTT 202140 29 96.6 32 .C........................... CCCGGACGCGGTATCTAAAGGCGTTGAGGACG 202201 29 96.6 32 .C........................... CAGACGCCAGTAACACACGCGCTGGTCCTCGT 202262 29 96.6 32 .C........................... AGTACGCAAAATCGCAGGGCATTAACACGGAT 202323 29 96.6 32 .C........................... CGCCGTGAAAGCTGGTGGTGTTGCTGCTATTT 202384 29 96.6 32 .C........................... GTCAGTGACCAGCTCTTGCCGCGGTGGCTGGG 202445 29 96.6 32 .C........................... TCAGAATCAAAGCTCGCGAAGAGGCCATCGAA 202506 29 100.0 32 ............................. CAGATAGGTCGGGTTAGAGCTACTGATGCTCT 202567 29 100.0 32 ............................. TTTGCGATTGTACTCACCTGCAGGCATCCACT 202628 29 93.1 32 .........C.T................. TGGAAGAATTGGTGAAAGAAGCGCAGGCTGCC 202689 29 100.0 32 ............................. AGTACGAGAAGAAACACTATCCCATCGAGTCG 202750 29 100.0 33 ............................. CGAGCGAGGTTATCCGCTATTTAACCGCCCCGC 202812 29 100.0 32 ............................. ATAACACGCAGCTTTATCAGGTTTTATCCGGA 202873 29 100.0 32 ............................. CGGGCTAACACTTCATATCCCGCGTCCGCAAA 202934 29 100.0 32 ............................. GGCTGCGCAGCTGCAAGACTGGCTGGAATTAC 202995 29 100.0 32 ............................. CCCCTCTGACTCAAACTGCTTTTTGACGTACT 203056 29 100.0 32 ............................. GCGTGCGGGTCGCTGGCGGTGTATTTTTGGTG 203117 29 96.6 32 .C........................... CCGGCATAATTAACCTGACACTGCCTGATTTG 203178 29 93.1 32 .C..........................A TTTTCATTGGCAACATAGAAAAGTTTGCCAAC 203239 29 96.6 32 .C........................... TGATTGGCATGATTGCGTTATTCATTTCATCT 203300 29 96.6 32 .C........................... GTTCTGGAAAATAGCCGGGCCGACTGCTGGCT 203361 29 96.6 32 .C........................... GGATATTTTTAAATCATCCGGCAACCCGGCTT 203422 29 89.7 32 .C...........A......T........ GGTGGTTTAAATCACTGTTACAGGTAGTCGGC 203483 29 93.1 32 .C.C......................... GACGCAGCCCGGATGTTGAGCCTTTCTACGAA 203544 29 100.0 32 ............................. CGGTAAAAATCATCAAATGTCAGTTCAGTGGG 203605 29 100.0 32 ............................. ACGATAAGGTGGATGGTTTTGCTCCGGCTAAA 203666 29 100.0 32 ............................. CGCTTTTTTTATGGAATAGGCAATGACGGGGC 203727 29 100.0 32 ............................. CTAAAGCCATTTCTGATTACGAAGGCTCAAGC 203788 29 100.0 32 ............................. TACCTTGAGAAAACCGCGCAATCTGTGCTGGT 203849 29 79.3 0 .C...........C...A..A....T..T | C [203874] ========== ====== ====== ====== ============================= ================================= ================== 46 29 97.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCAAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTTGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230181-231124 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJP01000001.1 Cronobacter sakazakii strain cro2890W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230181 29 100.0 32 ............................. GCTGCACAGGATACCGCCAAAAAGGCGGCGGA 230242 29 100.0 32 ............................. CGTACATAGTTAAGTCCTTACGTGGTTATTTG 230303 29 100.0 32 ............................. GCCGTATTCATGACGGTGACATACTGGTTGTG 230364 29 100.0 32 ............................. GCTAAAGCAGTATGGGAACCTTTATCAATCGA 230425 29 100.0 32 ............................. ATCTGATTCTCGACCGATTAAGGAAAAAGCAA 230486 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 230547 29 100.0 32 ............................. GCCCTTCTCGGTAATCCCCAGGGCGGATCATA 230608 29 100.0 32 ............................. ATAGTTGAGCGCCTGTCTCATCAATCGGACTA 230669 29 100.0 32 ............................. ACGAACCCAGCACGGCAAAACTGGCGGCAAAA 230730 29 100.0 32 ............................. GATGTAGGCTTGAGCGTCGCCGCTCTTGGCTT 230791 29 100.0 32 ............................. CGTGAAAAGGGATTCTCGGTTAAGGATCTCAG 230852 29 100.0 32 ............................. CGACACGATCCGCCGCCTCGGCTATGAGGCTG 230913 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 230974 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 231035 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 231096 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACTGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //