Array 1 43055-43937 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNG01000012.1 Escherichia coli strain BX1S59 NODE_12_length_134875_cov_98.1641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43055 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 43116 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 43177 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 43238 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAATCC 43299 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43360 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 43421 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 43482 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 43543 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 43604 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 43665 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 43726 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 43787 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43848 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43909 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69636-71190 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNG01000012.1 Escherichia coli strain BX1S59 NODE_12_length_134875_cov_98.1641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69636 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 69698 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 69759 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 69820 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 69881 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 69942 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 70003 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 70064 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 70125 29 100.0 32 ............................. CGCTGCTGTTCAGCGGCAATCAGATCAGAACC 70186 29 100.0 32 ............................. GGAATCCACCGCGTCGGCTATGGCCTGATAGT 70247 29 100.0 32 ............................. ATTAATAGTTTTTTCATTTGTTGCCCTTTAGA 70308 29 100.0 32 ............................. ACCGCCTATTACAACGAAATCGATCCATTCGC 70369 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70430 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70491 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70552 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70613 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70674 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70735 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70796 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70857 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70918 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70979 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 71040 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71101 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAAGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //