Array 1 55488-56656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCG010000003.1 Providencia stuartii strain F3W NODE_3_length_568313_cov_31.373584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55488 28 100.0 32 ............................ TGAAGTATACGAATATCTGTGCGAAACTGGTC 55548 28 100.0 32 ............................ AATAGACACGCGGTATGCGTTCAATATAAAGT 55608 28 100.0 32 ............................ TGAAGATTTACGCTCGGCGTCGTCTAATGACC 55668 28 100.0 32 ............................ AATTTCTGAAGCTGATGATATTCATCTAGAAA 55728 28 100.0 32 ............................ TGATGCTAAACCGTGGGGTAACGGATCTATTT 55788 28 100.0 32 ............................ ATATCAGCTAACAATGGATCTGATTCTATTAA 55848 28 100.0 32 ............................ CCGGTACACTGGTTTTGCTTTTACCGGAAAGG 55908 28 100.0 32 ............................ CGATTCTTCCACGGCTTGCCAATCATCTTGTT 55968 28 100.0 32 ............................ TATAGTAAAGTACAACCAGTGCCCAACAATCG 56028 28 100.0 32 ............................ TAGCACGCGTAAAGTAAACAATAAGCCGTTAA 56088 28 100.0 32 ............................ ATTCATTCTTGAATAAACAGATTTAGGAATAT 56148 28 100.0 32 ............................ AACGCTTAAATTAGCGGTTAAGTTCGTGCTGT 56208 28 100.0 32 ............................ TGTACGAACTCCATGTATATCACCGATGGAAC 56268 28 100.0 32 ............................ TCATTATGATACCCGCTTACCTTCTCCGCTAA 56328 28 100.0 32 ............................ GCATATCTGGGGCGTCAACCTTTCTTATGTAA 56388 28 100.0 32 ............................ CAGTGGCTGATGCTCTCATGGTTGTAGCTGAA 56448 28 100.0 32 ............................ GTTTCGTCTATGAGATTAAATTACCAGACGGT 56508 28 100.0 32 ............................ CACTGAAGGTATTTATCATTAGTCCAGCGCTG 56568 28 100.0 32 ............................ TATGGAACTTGAAGTTTATTCAATTCAAGGAA 56628 28 85.7 0 .......................TT.TC | C [56648] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAAGCGGCACTAGACCAAATTTCCAATATTGAAGCAAAACAAGGCTTACAACTACAAGAAATTGATAAGTTGGATTTTTTAGCAGATACGCGTTCAATTCAAAATGCTGCTCGTAAAAGTGAGTTGCTTGAGACTAACTGGACAGGCACCACCACGGATTACTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTCAAAGATTTAAACAGCATGTCTTTATTTGGTAGTCGTTAATCATCTAATACTTGAGTTCTACTCAACCGCGCTTTGCCGTTATTGGAGCGCGGTTTTTTTGTTTTTGGTGATTTTTGGGATCCAACGAAGAATGCTTCAACGAAGTTGTGCTATCTTAAATTTACCCTTTGTTTTTTGTTCTTTAAAAAAGTCTCTTAAAACAATATGTTATAAACTGAGTGTAAAAAGAAGGTATTTTCTTATTTTTATCGGTAACAGGTTGTTGTGATTCACTTTACTTATGATATTTTATA # Right flank : CAACACGCTATACCCATAAAAAGTCGTTTTGACTGGGGCTTTTGCCAAGCTCTTCACAAATTTTACTTTAGTACCAACTTTGACTTGTTTAGTGTGGGAATGTAGATTCTAATTGACTGTAAAACATTCAATAAACTTATCAATTTAAAAGGATGTTACGTCATTATGGATGATTTTTCACCATCAGATCTCAAAACCATTTTGCACTCTAAGCGCGCCAATATGTACTACTTAGAACATTGCCGTGTGATGCAAAAAGATGGCAGGGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTGTATTTTAATATTCCTATTGCGAATACCACGGTTATTTTGCTCGGAACAGGAACGTCTATTACCCAAGCGGCGATGCGAATGCTATCCCAAGCGGGGGTTTTAGTCGGGTTTTGTGGTGGTGGCGGGACACCGTTATATATGTCTACAGAAGTGGAGTGGATGACACCTCAAGGGGAATATCGACCAACAGAATATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65315-66641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCG010000003.1 Providencia stuartii strain F3W NODE_3_length_568313_cov_31.373584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 65315 28 100.0 32 ............................ GTAATGAAATGGTTAGGAGAAAGGATCTTAAA 65375 28 100.0 32 ............................ TTTATATTTACGGTTAATAGGTAGTGCATCAC 65435 28 100.0 32 ............................ TACCGGAACAGTAACTAAACTTAGGATATAAA 65495 28 100.0 32 ............................ GCATACAGATTTAAAAATTAGATATCGTCGTT 65555 28 100.0 32 ............................ TTATAAACTGTGTGGAGTGCTTAGGATGGGAA 65615 28 100.0 32 ............................ AAAAAGTTCAGCACAAAGAAGCATCGCATGTT 65675 28 100.0 32 ............................ TATCGATGATTCTGGTTGGATACAGCCTCCTG 65735 28 100.0 32 ............................ TACAGGCCACCGTACAACTGTCCGCACAGGTT 65795 28 100.0 32 ............................ GTTAATATATGCGCCAGTATTGTTTTCATTCG 65855 28 100.0 32 ............................ GAAGGACAGAGACGCTTGCGGCTCTGCGGAAA 65915 28 96.4 32 ...........T................ ACCCTGATAGCGAAAATAAGGGACGTTAAATA 65975 28 100.0 32 ............................ AACGTATAGTGCAAATCTTTCGCGGTGATAGC 66035 28 100.0 32 ............................ ATAATCCAAGCTGCAGCATCTTCTTGCGACAT 66095 28 100.0 32 ............................ AAGAATAGCAATAAATGGTGCTGAATTGGGAT 66155 28 100.0 32 ............................ TGCAAACATTGAACATATCGGCAACTATATGA 66215 28 100.0 32 ............................ AGCAATAAATGCATCACGAAATTCAATCACAT 66275 28 100.0 32 ............................ CACCAGCCGCCCATTTTCACAGTTGAATATTT 66335 28 100.0 32 ............................ AAAACAGAGCTATTTCTTTGTCACTTAAATAG 66395 28 85.7 191 .....................C...TGC TACGGCTTAGAAGGCCGTTGTTCACACTTCAATTTATCCATCATTGTTCGCTGAACAATAATTAAATCCATCTATTTATAATTGATATTTATTTAAGCGAACTTCTTTATTAGGTTAGTGATGCGTTTAACGCGAGATATATCTTGCTACTATCACTCGATAGCTTAGAAATGAAACAAGATACGGGTATT 66614 28 71.4 0 TA........ATG.......T..C...C | ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 20 28 97.7 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTAAGTCAATTCAGCAGGTTCCCGAGCAATCTGTGCCTGTGAGTTATATTCGGCGCCATGTGAAAGGGAAAAGGCGAATAGAGGCAGATATGCAGAAAAAAGCGCAGCTATGGTCGGCGAAAACAGGGCAATCGTTGGATACCAGTTTAGAGGCGTTATCCAAAAGCAAGCCTAGAGCCAACAATCGCTTACCCTTTATTTGGGTTGAAAGTTTACACACCAAGCAAACTGAGGCGGGCGGGCGACCTTTTCCGTTGTTTATTGAAAGGGTGGAGTCAGCACAAGAGCAAAAAGGGCCATTTAATTGCTATGGTTTAAGCCAAGTAACGAATGGCTTAAATTTGGTTGCAACGGTTCCTCATTTTTGACCTTTATTTTTTGCTCTTTAAAAATTGAATTTAAAATCAATAAGTTATAATGTGGGTGAAATAAAAGGGTATTTTTAAATAAATACCCTTAACGCATTGTTATCACATATTTTTTGCTTTGAAGTTTATA # Right flank : CATAGTAGTAAACCTGAAAAAAGAGACGGGTTTTAACTACTTTAATGAGGGGAATTATATGGAAATTATCATCAATTTTTCTTGGGTTACATTAATTATCAGATTCACAAAGTGGTACTGATAATGAACTAATGCTGATTGACCGAGTATCGACACTCAAACAAACAAATTAAACATCAGCGAGAGCTGCTCAAATGCTTGGTGGATAAGCCGTTCGGTGTAGCGGGGGAGAATTGAAATAATCAACCCTAACATACTGATGCCAATGGTCAGTGTCAGTGGGAAGCCGACCACAAATACCGACAGTTGTGGAGTCATACGGTTTAAAATACCCAGCGCAAGGTTAAGAATTAAAAATAAGGTAATAAACGGTAAGGCTAACATTAACCCATTAATAAATATGGTGTTGGCGAATTGAGCGAATACCCAAAAACCGTCGCGATTTAATGGTGCGGTTTGAATTGGGATAAGCTCAAATGAATTGACCACAATATAAATAA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //