Array 1 205787-199840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAQO01000003.1 Salmonella enterica subsp. enterica strain CFSAN058507 SRR6919734_NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 205786 29 100.0 32 ............................. GCTGGCAATACAGGAAACAAAAAATTTTGTTA 205725 29 100.0 32 ............................. TTACTTTGCATACTAAAATCCCTTGACAGGTA 205664 29 100.0 32 ............................. CGCCGCCCTTCAATCACGCTACGGGCCTTAAC 205603 29 100.0 32 ............................. TGATTTCTTCGCGTTGTACTTTGGCGGCATTT 205542 29 100.0 32 ............................. AATTTCTACCGGCACATGACGTATAACACGGC 205481 29 100.0 32 ............................. ACTGGTATGAATGCCAGAAAATGTTTTCCCCT 205420 29 100.0 32 ............................. TATAACGGGGTGGAAAGTGGCCGACGAGAAAG 205359 29 100.0 32 ............................. TATTTTTGCACGTTTTACAATTTTGATCGTCG 205298 29 100.0 32 ............................. GGGATCAGTAATTCCAGACACAATAAAAGATC 205237 29 100.0 32 ............................. GTTTATTAAATTAATCTATGCACTCCAGTGTG 205176 29 100.0 32 ............................. TCTGCATATAGCACACGCACTGGCATCAAGGT 205115 29 96.6 32 ............................T GGCTACATGCTGACGTTTTCGCCATCGCCAGA 205054 29 100.0 32 ............................. GCTGATATTGCGGCCATCTTTCACTGGACGCC 204993 29 100.0 32 ............................. CAGGCGAATGAGGCGGCCCCGTTGTGTGGTCA 204932 29 100.0 32 ............................. AATATATTCAACATAGTGATAGTGAATAGATT 204871 29 100.0 32 ............................. CGTGCTATCAAAAAAGAGCAGCGCCGGGAAGA 204810 29 100.0 32 ............................. CCTGTAGTAATAACTTACCTACTGAAAATTAA 204749 29 100.0 32 ............................. GCGCCGCTGTATTTGTCGTTGCGCTTCCCGTC 204688 29 100.0 32 ............................. AACGCACGCTCCGACATAAACCTTCAGATAGG 204627 29 100.0 32 ............................. AGCGTTATCCTGTGGCTGTTTTCAAATATCCG 204566 29 100.0 32 ............................. TATCCCCGCAGTACCCTGTGAAGTTAACCAGT 204505 29 100.0 32 ............................. ACCAGAATATCTTCGTTGCCCGCCACCAGACC 204444 29 100.0 32 ............................. GCACCAGATCGTCAAAGAACGTACACCAAAAC 204383 29 100.0 32 ............................. ACAGTCAGCTACAGGCACTGCTGAGGAGTGCG 204322 29 100.0 32 ............................. GAATATCAGATCCGCTTCTTTCTTCGTGCGTA 204261 29 100.0 32 ............................. ACGCGGTGGAAGAGAACTTCGCGCAGCAGGGC 204200 29 100.0 33 ............................. GATTGCGGCGCTTGATTACTTCGTGAAAAACGG 204138 29 100.0 32 ............................. ACCACACTACAGAAAGGCATTGCCGCATACGC 204077 29 100.0 32 ............................. GCCTGCGTGTCCATGATGGCGGCTTTAATGTT 204016 29 100.0 32 ............................. GTGGCCGCAGGCACTATCCGCCTCGGACGTGA 203955 29 100.0 32 ............................. GTAATGATGGCGGCGGGGATTTTATTTTCGGT 203894 29 100.0 32 ............................. TCCGGGAGGCTCTGACCGTGGGCGTGGGTGCC 203833 29 100.0 32 ............................. CGTGTCCACCTGTTCAGGGCGAACAAATAACA 203772 29 100.0 32 ............................. CTTTCCCCGTGGCTTGTTTCTGCTCTGGCGGT 203711 29 100.0 32 ............................. TAAATAGCGGTGAAGAGCCAAATTATATACCA 203650 29 100.0 32 ............................. CTGGCAGCCACCTGTGAAAAGTATATTCAGAT 203589 29 100.0 32 ............................. CCTCCCTGACCGGTAATACTGCCTTTAACCAG 203528 29 100.0 32 ............................. GCTTTCATATGAGCATCAGCAGCAACCTTGTT 203467 29 100.0 32 ............................. CGTAGCGTTGTAATCCGAAACCCATCATTATT 203406 29 100.0 32 ............................. CAGCCTGAGCCGCTGGGGTGGGACTGAAAATG 203345 29 100.0 32 ............................. GATCTTGTTTCGCTCAATAAGGCGGGAATCCT 203284 29 100.0 32 ............................. ACAGAGTGTGCAGAATTGATTTCTCCAGTTAA 203223 29 100.0 32 ............................. GTTCGATCGTTTACCAGATTGGTGGCATTGAG 203162 29 100.0 32 ............................. AATGCACGGCGTCGAATACTGCTGCGTCAATA 203101 29 100.0 32 ............................. ATGTGTCTGCGTTCGTCACTTTGTAGTACAAG 203040 29 100.0 32 ............................. CGATACGCACACTTTGCCCCAGACCATCTTGA 202979 29 96.6 32 ............T................ ATTCACTTGGTTTTTGGTTGTTCGAATCACCT 202918 29 100.0 32 ............................. GCCACGCCGTAGCGCAGCCCTGTTGACCTGGT 202857 29 100.0 32 ............................. CTGAATCTGCCCTCAATGATGCCTACAAAGCC 202796 29 100.0 32 ............................. GACCGCTAAACTGGTATCAAATATCTGATGGA 202735 29 100.0 32 ............................. ACGGCCAGCCAGAATGCGATGACGTTCGCCGC 202674 29 100.0 32 ............................. CCAGCGTTGCTCAGTGCCTGTCGCAGTCCATC 202613 29 100.0 32 ............................. GAAATAACGTTGATTGTGCTGTCTGATTTGCA 202552 29 100.0 32 ............................. CATCATGACGCACCCCTTTTACGGCTTTCAGG 202491 29 100.0 32 ............................. GTGTGAGGCTCAGACATTAGCGCGATAAAAAA 202430 29 100.0 32 ............................. CATCCTTAAACCAGCCGTTGGTTGCAAGGCTG 202369 29 100.0 32 ............................. TGATAACGCTCTGGGCCATTTTTCATCTCCGA 202308 29 100.0 32 ............................. GCTCGCTTTCCGGTGGCGTATCGGTAACGTTC 202247 29 100.0 32 ............................. CTCACTTTCATCATTACTTAGCGCCGATATAG 202186 29 100.0 32 ............................. ATATCCCGTCCACCGGAGGTACACAGTGAACA 202125 29 100.0 32 ............................. GTGGGCGGTTGTGGTGCCACTTTCCAGCCACG 202064 29 100.0 32 ............................. AGTATAGCTGTTTTACTCTCATCAGCCAGGGT 202003 29 100.0 32 ............................. GTGAAGATGAGTCCTTTCCATGCGCCTTTCAG 201942 29 100.0 32 ............................. ACCGGACTTAGCGGGATTGCTGGCGTACTGAA 201881 29 100.0 32 ............................. GCAATATCGTTTAAACCAGGTGATGCCAATGT 201820 29 100.0 32 ............................. CTAAAAATTCAGCGAAGGATGCTTCAAACGAT 201759 29 100.0 32 ............................. GTAATACGCTGGTGGCTGTTCGTGATAACGGC 201698 29 100.0 32 ............................. AAAATTAATGCGTCTGGACTAGTCTGAATATT 201637 29 100.0 32 ............................. TTAATCAGCGCCGGGTTGCTGTCGCACAACAC 201576 29 100.0 32 ............................. CCGATCTTCTGCCTGACAGTATCCGTAAACCC 201515 29 100.0 32 ............................. GGCGAGCGTCAGTACAACTATGTGGTGATGCC 201454 29 100.0 32 ............................. CTGGCGCAGGCCATTCAGTCAACCAGAAAAGA 201393 29 100.0 32 ............................. CCTGCTTTGATAACCCTCTCAGGCGGCGAGGG 201332 29 100.0 32 ............................. ATCGCCGTCAGTCACGAGAAGGTCGATATAGA 201271 29 100.0 32 ............................. TGACTGAATCCACCAGGGCGAATGCGTTATGT 201210 29 100.0 32 ............................. GTATTCTGTGGAGGCGTCATTACCATTGTTGA 201149 29 100.0 32 ............................. TAGGCCACGTACGCAGTAGTTTTCGGATACCA 201088 29 100.0 32 ............................. CCTGAACGAGGGCCGGACATGGGAACTACTCA 201027 29 100.0 32 ............................. GGCCGAATACGTCACCACCATGACCACACTAC 200966 29 100.0 32 ............................. GGGGATACTTTCATCGTCATGCTCTCCTGCTT 200905 29 100.0 32 ............................. TGAAATCAAGTTCAGCGGCCACTTACTCACCT 200844 29 100.0 32 ............................. GTAAGCGGTTTGACCTGAGCAAGGGGATGTTT 200783 29 100.0 32 ............................. TTGTTACCTTTGGCGTAATTACCAGCAACTAC 200722 29 100.0 32 ............................. GGAATCCTACGACCTGGTGAAATACGACTACC 200661 29 100.0 32 ............................. CCGAGGAAACCAATATCGCCCACATGTGGCGG 200600 29 100.0 32 ............................. GGACCTTTTCAGTTTACTCCGCCTACGGCAAA 200539 29 100.0 32 ............................. GCATTGAGGGAAAAAACAAAAGCTCTCTATAG 200478 29 100.0 32 ............................. GCCTCGTAGATATTCCCGAACTGTACGCAGAA 200417 29 100.0 32 ............................. TCCACGATCTCGCAGTGGGAATCAGGCATGAC 200356 29 100.0 32 ............................. CCCGCGAGCATGTGCAGCCCGGCATTATCGAT 200295 29 100.0 32 ............................. TTGCCGATACGGTAAACCTGCTGTGCGCCGCT 200234 29 96.6 32 ............................A CGCAGTAATACCGTCTTTCTGGGGTTCTTCGC 200173 29 100.0 32 ............................. TGGTGGATGTTTACGTCACCCATAATCCGAAA 200112 29 100.0 32 ............................. CCAGGCCAGGCGGTATATCGAAGCGATGACAG 200051 29 100.0 32 ............................. TTTTCGCCGGTATCGGTGCGCATCATGCCGAT 199990 29 100.0 32 ............................. TTTGCGCTCGCTGGCGTCAACAGCTTCTACGC 199929 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 199868 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 98 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAATCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCACCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //