Array 1 845598-845091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021894.1 Pectobacterium versatile strain SCC1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 845597 28 100.0 32 ............................ AGCGAGTGCCTGTTTAAATCCCATCACATACC 845537 28 100.0 32 ............................ GTGGTGTTAGATACCGCCATCGGGGATTGGGA 845477 28 100.0 32 ............................ TGTCCAGTTTCCAGCGCTGCAACACGCACTTC 845417 28 100.0 32 ............................ GCCTGACCCCTAGCGCGATATCAGGAAGTATC 845357 28 100.0 32 ............................ CACACACCAGCATGTGTCAGCGCATCAAGTGG 845297 28 96.4 32 ...........T................ ATGACTGATAATGCGCTGGCTGGGGTATGGGG 845237 28 92.9 32 .G.........T................ CCCGATGCACAGATGTCTGCTGAGACACAGGA 845177 28 85.7 32 T.........T..CG............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 845117 27 71.4 0 ...........TGC......-..C.GGG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 94.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCACCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : CTTATCAGGATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGACTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 854556-856265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021894.1 Pectobacterium versatile strain SCC1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 854556 28 100.0 32 ............................ GCGCAACATTGCGCTGAATTACATCGTGAGAG 854616 28 100.0 32 ............................ TGCTAACGTTTTCACGCCTGAACTGAACAGCT 854676 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 854736 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 854796 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 854856 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 854916 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 854976 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 855036 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 855096 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 855156 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 855216 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 855277 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 855337 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 855397 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 855458 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 855518 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 855578 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 855638 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 855698 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 855758 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 855818 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 855878 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 855938 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 855998 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 856058 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 856118 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 856178 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 856238 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGGGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 863620-862690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021894.1 Pectobacterium versatile strain SCC1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 863619 28 100.0 32 ............................ CATAACACCATGCTCTATCAGGGTGTGAGCAA 863559 28 100.0 32 ............................ TTGGGCAATAAATCTTTTATGGGTGGCATTTT 863499 28 100.0 32 ............................ GCAGCGCGCTACCTGTTTGTCTTTGGCGTATT 863439 28 100.0 33 ............................ GTCAACGGGGTGCCAGCGCGAAAGCGAGTATCA 863378 28 100.0 32 ............................ TGACCGATGATCTGGCCCGGCAAGTCGGAGTT 863318 28 100.0 32 ............................ AGTTGAGATACATCTCAGCGGAATCAGGTTTA 863258 28 100.0 32 ............................ CGCTATCGTCCAAAGATTTTGGTGAATGAAGA 863198 28 100.0 32 ............................ ACGATTAAACAGATACTGAGCGGCTGGCGTTC 863138 28 100.0 32 ............................ ATAATGGCAACACATATCAAGTTGATGCCCGA 863078 28 100.0 32 ............................ GTCATGGATGGATAAAGACGAACCGGCCAAAT 863018 28 100.0 32 ............................ GGGGCCAGCCTCTGCGGAGTTGACGATAAAGT 862958 28 100.0 32 ............................ GCCAGCAGTTAACCCTAAAATATGAGCAACAT 862898 28 100.0 32 ............................ TGCTGATATTGTCAGGCTGCGTCAGCGACCGG 862838 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGTAGCGACGA 862778 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 862717 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4463230-4461310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021894.1 Pectobacterium versatile strain SCC1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4463229 29 100.0 32 ............................. CAAGCCAGTGAGACCGATCGGCGTTATTGAGG 4463168 29 100.0 32 ............................. GTCATTGCCTGCGGGGGTATTATGAATAAACC 4463107 29 100.0 32 ............................. CGAACGATCCCTCAAAACTCGCTGATGTGGAT 4463046 29 100.0 32 ............................. AGGCCAGGCTAAAGGCGGTGGAAAGCAAAAAG 4462985 29 100.0 32 ............................. CAAAACGCCATTAATTTTATCCGGCAGTTACC 4462924 29 100.0 32 ............................. CAGATGGTTGGTACCAAACCACCAGCCGCAAG 4462863 29 100.0 32 ............................. TGGCAGCCGGTCACAATATCACTGTCACAACG 4462802 29 100.0 32 ............................. TGACAGTAAGTCAGATTGAGCAAAAAACTGGC 4462741 29 100.0 32 ............................. TCTGATTTGTTCATGGAATTTACCCGTTAATG 4462680 29 100.0 32 ............................. TTTTTACCGTGGGTAAATATCCGTATATGTCA 4462619 29 100.0 32 ............................. GTTATCTCTGTAAAGCCGCTTAACGATTCAGG 4462558 29 100.0 32 ............................. CTGCGCGTCTGGCGCTGGCGTCATCCGCAAAC 4462497 29 100.0 32 ............................. CACAATGGCAATGAAACGCTATGGCGCTGACG 4462436 29 100.0 32 ............................. GTGTAGCGTATCATTTTGACCCCCGCTATCAT 4462375 29 100.0 32 ............................. CCATTGCACTTTCTCCGGGCATTAAAAAACCC 4462314 29 100.0 32 ............................. CACGGGCATTGCGCGCCGCGTTCTTTCACTAG 4462253 29 100.0 32 ............................. ACCTGTCGATTGACCAGATACCGAAATTTCTG 4462192 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 4462131 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 4462070 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 4462009 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 4461948 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 4461887 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 4461826 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 4461765 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 4461704 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 4461643 29 100.0 32 ............................. CCGTATGGCTCTAAATTCCCAACGTTGGAAGA 4461582 29 96.6 32 .............C............... GGCGACTTACCGGCTTGCGATTCTCGGGGTGT 4461521 29 96.6 32 .............C............... GGCGACTTACCGGCTTGCGATTCTCGGGGTGT 4461460 29 96.6 32 .............C............... ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 4461399 29 96.6 32 .............C............... TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 4461338 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4466919-4465426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021894.1 Pectobacterium versatile strain SCC1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4466918 29 100.0 32 ............................. GCAGACGAGATTATAAATGGTAAGCGCGATGC 4466857 29 100.0 32 ............................. GCATTCCACCAGCTCCAGTGGGAACAGAAATT 4466796 29 100.0 32 ............................. ACCTCGTTGACTGTTCGGCTGAGTGGCCTAAC 4466735 29 100.0 32 ............................. ATAATCCTGATGGCCCGATACGACTACTGAAA 4466674 29 100.0 32 ............................. CGCGTGATGTCCAATCTGCGCGTTGCCATGCC 4466613 29 100.0 32 ............................. CGATGACTTTACGGTGTACCTCCTTGCTAAAA 4466552 29 100.0 32 ............................. CACGTATGCGTTACTGTCGTCAGGTGACGCAG 4466491 29 100.0 32 ............................. AGCTAATGGCGAAAACGCCAATACGCCGCCGA 4466430 29 100.0 32 ............................. TTAACATTGTCTGATTGGACTGCATTGATGAA 4466369 29 100.0 32 ............................. TATACTACGGCGATGAAAAAGATTTCTGGTGT 4466308 29 100.0 32 ............................. AGATGGTGTTGTAGTAGATTTTGATGAACATA 4466247 29 100.0 32 ............................. TCTTATGTAGATCTTGCCATGTCGCAGCATCC 4466186 29 100.0 32 ............................. TCAATGCCTCGATCAGAGTTGACTTACCGCCA 4466125 29 100.0 32 ............................. CCTAGCGGTAACGTTCCCCTGTACCCACATCA 4466064 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 4466003 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 4465942 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 4465881 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 4465820 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 4465759 29 100.0 32 ............................. CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 4465698 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 4465637 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 4465576 29 100.0 32 ............................. CATGACGCAGTAGTTGTTATTAACAGGGGTAC 4465515 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 4465454 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //