Array 1 686177-685746 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENH01000002.1 Prevotella intermedia strain KCOM 2833 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 686176 37 97.3 29 C.................................... TTGTTAAAACTAAACTCATAATAAAAAAT 686110 37 100.0 28 ..................................... AAACTGGCACGCCATCACCATTCAAGAA 686045 37 97.3 29 A.................................... AAGAGGGAGTTCCCCTCAACAGCCCAGTC 685979 37 100.0 29 ..................................... CTCCACGCCTAATATCTTAGCTTCATAAG 685913 37 100.0 28 ..................................... ACCAACTGATTTTGCCTTTTTAAAAGAC 685848 37 100.0 29 ..................................... ATCATCGGTTCACCCCCTTCGCTTTTAAC 685782 37 94.6 0 ...........................C.C....... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.5 29 TGTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : GTGCGGAATGCCTTTTCGCACAACCAATACCCAATGTACGATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGTGAAACTGAAAGAGGAAGTTAGTAAGGCAGCAAAAAAAATACAGAACGAGGAAGATAACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTTGCTGATGTTGAATACAGCAAGCACGCCTATGCGCTGCTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGAAAGAAAGGAACAAAACATATAAGAATCAGATAGTTAGGTTAGGTG # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAGTAGAAAATGGAAGGGGAAACACGCCTTTCTATGGGTGAAAAAGGCGAGAAAGGTGTAAATATTTTTTTACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACTCGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGAAATTATCTTTACAAAACAAGAGTGATTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTTCGGGCATCAGCACAAGGGCGGCTTGCCGACAGTGCGACATCGGCAACGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGTTCGTTCGGTTCTGTTAGCTTCGGTTGGTTGCTCTTCGGCTGTTCACGAAGGGTGCTTCGGGCGTCAGCTTTTACGGTTCTTGGGGAACGAGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1109791-1110762 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENH01000001.1 Prevotella intermedia strain KCOM 2833 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1109791 47 100.0 31 ............................................... GACGTCCATTACGAGGTCGTAGAGGTGGTAG 1109869 47 100.0 30 ............................................... TAGGTGTTTAAAGTTAGGCTTTTGCCACCC 1109946 47 100.0 30 ............................................... ATTTGCACACAGTTCATTCGTTATCGTTGT 1110023 47 100.0 30 ............................................... CGCCCTATTGTCATTTCAATGCCACCAAGT 1110100 47 100.0 30 ............................................... CATTGGCGGGTATTTTTAATTATGGAACAC 1110177 47 100.0 30 ............................................... CCAGAGATAGGATTTCGTAGAACTTCAGCG 1110254 47 100.0 30 ............................................... TTCTTTCAATAAATAATTATAATTTGAATA 1110331 47 100.0 30 ............................................... AAAAACACCTCTCGTTCTTAAAAATTGTTC 1110408 47 100.0 30 ............................................... TTAACAGAGAAAATATCCATCTATCGTACT 1110485 47 100.0 30 ............................................... ACGGCTCACGGTTCAGACTACGACTGCAGC 1110562 47 100.0 30 ............................................... TACGAAAAGGCTTTAATGCGCTCTAAAGAC 1110639 47 100.0 30 ............................................... TTTTTCACACCACGCATACACACCTGATAA 1110716 47 97.9 0 ...........C................................... | ========== ====== ====== ====== =============================================== =============================== ================== 13 47 99.8 30 GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGACGATTGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAGGTACATATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAGTTAGAACTCTTTTAATCCTTCTTCTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAATCTTTCGTAACAACACTGATGTTCATCACTTTAATCCATTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGAGCAGGAAAATAGGGGTCGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTACAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGATAGAGCTCAAAATATAGTCTATATGCGAACAAAAATATTCGTTTTGCAACATAAAAGGTGCAATTCCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGACGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGGGGCTTTGAAATTTAACAGTTTCGGAGTCGTTTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //