Array 1 64-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000102.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig102.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 64 36 100.0 38 .................................... GAGCACAGCGATCCGGAGCCGGGCATCCTCCCGCAGGG 138 36 94.4 39 ..........G..........G.............. CACTCCGGGACCACCGCATCCGGGTACACGACGTCCAGT 213 36 91.7 36 ...................T.G........T..... GGCACGCTGGAGCACATGAACCGCACCGGCGAGATG 285 36 88.9 37 ..................G.AG......C....... GCCGTGCTGACGGGGCGGGGCGTGCGCTGGGTGGAGG 358 36 91.7 37 ..................G..G.........T.... ATCGACCCTGCGTACCTGCACGGCGAGCACGCGAACC 431 36 100.0 37 .................................... CTGCCTACCTGCGGAAGGTGGAGCCGGGCCCCTACGG 504 36 94.4 0 ..................G..G.............. | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 94.4 38 TGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Left flank : CTGTTACCCGATGCGCACCCATAGAGGAGCGAGCGGTAGGCTGTTTCCACTGCTCACGCAGCCT # Right flank : GTCGTCTCCCAGGTCCCGGCCGACGAGCACCGTCTAGGCCCTGTCGTCAAATGATCTTGGCTGGTGGATCATGGTCGTGTGATGCGTCGTCATGAACTGTCCGATGCCGAGTGGGAGTTCGTTCGGCCGCTGCTGCCAGTCTCGTTGCGGGGCCGGAAGCGGTTGGACGACCGGACGGTCCTCAACGGGATCGTATGGAAGTTCCGTACCGGAGTGGCCT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13816-12823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000021.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13815 29 100.0 32 ............................. GTGCTCGCTGGGGCTGCCGTCGCCTGGATCAT 13754 29 100.0 32 ............................. GCGCACACCACCCAGCACCACGTCGCCGACTC 13693 29 100.0 32 ............................. TGCCGTTGCGGCACGTCGGCGCCCGCCGTTGC 13632 29 100.0 32 ............................. CGGGGCTCTTCGGCGTCCGCCGCCCGGCCGCC 13571 29 100.0 32 ............................. GCCATCGAGCGCGCCTTCGGGAAGAAGGCCGC 13510 29 100.0 32 ............................. CTCACGATCTGCAACTGAGGCATGACTCCACG 13449 29 100.0 32 ............................. GTCTGTTCCTTGGCTGGGCCGATGCTCATGGG 13388 29 100.0 32 ............................. GTGTGGAGTCGGCCGTGGCTGAAGCACCAGGC 13327 29 100.0 32 ............................. CCGCCATACGCGCCGCCCTCGCCTCCGCCGCC 13266 29 93.1 32 .T..........................C CCGACGGCGGGTTCCACCCCGACCACGCGGCC 13205 29 96.6 32 .T........................... GTTCGCCGGCCGCCCCGGGCCTCCCAACCCGC 13144 29 96.6 32 .T........................... TTCGTCGAGGGTGATGCGCTTGCCGGACTGGA 13083 29 93.1 32 .T.......................C... CATCCCCGCGATGGCGAGCATGCCCAGGGTCT G,C [13060,13071] 13020 29 89.7 31 .G............T.........A.... GTGTTCGTGGCCGTCACGCCGGTGGCTCGGC 12960 29 82.8 32 .C..A..T..................T.A CACGACGCGGTGACGCGCGAGGAGCTGCTGGC 12899 29 82.8 19 .T...........GG..........GA.. GTCGTGTACGCACGGCGGA Deletion [12852] 12851 29 69.0 0 .TTT.T.......GT..A.......CT.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.3 31 GACCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGATGTCCAGTCCCTGCTGACCCCACCCCACACCCACACCGCAGCAACCGACGACGACACCGACGACGAAACCTCCGAACGGCATGACGTGCGCATGGTCCACCTCTGGGACCCCAAAACCGGAGTCCTCCCAGCAGGCGTCAACTACGCCAACGGAGGCCACTGATGCCTTCCATGGTCGTCATCGCCACCACCGCGGTCCCCACCCACCTACGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTCCCCGGAATCTTCGTCGGCAGCGTCTCGGCCCGCGTCCGCGACGAACTCTGGCACAACGTCACGCAAGTTGTCGGTGACGGTGCTGCCATCCTCGTCCATCCCGCCGCCACGGAACAGGGCTACGCCATCCGCACCGCAGGAACCCGCCGCCGGACCCCCGTCGACTTCGACGGCCTCACCCTAATCCGCATGACCGCCGCACCCCAGGTAAAGAAAACGCAAACCCCCTCTTAGTGCGCAGGTCAGAAAGG # Right flank : GCGTTCGAGGAGTAGTGCGGCGCCGCCTCGAATGTATGCGTTCGGTAAGCGGCAGGAAAGGCACACGGCTCCGGAGGCCGTCGCTGTTTGTCTGGCCCTGCACCAACTCGTTCAATGCCACGTTCGAGCCGTCACCGCCTGTCAGTACCGTCGGTTCCTCTGGGCCCGCGGTACGGTCGACCGCCCGCCACCGACCGAGGCCACGGTCCCAAGTCCCAGCAGGTCCATGCCGAAAAGCCGGCAGCGAACCAGGCCCACGCTGCGCCGGTGCCCGCACACGGCGTGCGCGTCGTAGTGGATGAGCTCTCGGTGACGGAGGTGAGCCTCGGACTGCTCGACTTGTACAGCTCTCGACCTTCGAATGTGGCGTAGAACACATGGTGGCCGCAAAGGGAATCCCTCCTTTCGGTGGGTACGCCCCTATCTGTTGCTCTAGGCGTGAAGACGTTGATCCGCTAAGTTCCCCCCGCTAATAATCTTCATGAAACTTCAGAAAGTGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GACCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23661-24852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000021.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 23661 33 97.0 28 ...............................G. CGTCATCCTGCCCATCGTCGTCGGAACC 23722 33 93.9 28 .............................G.G. TGGGCACGGCGGCTACTTCCTCCGGTCC 23783 33 93.9 28 .............................AT.. ACATCGGCATGCCCGCCGCCGCGTTGAC 23844 33 90.9 28 .............................C.TT TCTCGACGCCTACAGTCTGACCGTCACG 23905 33 90.9 28 .............................CGT. TCGCCGGGGGCTGGACTCTCGCCTCCAG 23966 33 100.0 28 ................................. CGCCTCGAGGTCGACTGAGGACGACTTC 24027 33 90.9 27 .............................CT.A CCTGGGCCGTCGGCCGGGGGCGTGCCC T [24055] 24088 33 97.0 28 ................................A GGCGGACCGCAGCGCGGCCGTTCGGGCG 24149 33 87.9 28 .............................GGTA TGCGGACGGGGAGATCGCGGACCGTCTC 24210 33 93.9 28 ...............................GT GGACGGTGACGATCCGAGGGTGGGACAG 24271 33 90.9 28 .............................C.GT ATGTCCTGCTGAGGGGCCGTTAGATTGA 24332 33 93.9 28 .............................A..T ACGCGGTCGTGGCGCCGGTCGGGACGCA 24393 33 100.0 28 ................................. GCAGGCACGTGCAACCTGATCCGGGGTA 24454 33 90.9 28 .............................CAG. CGCAGCCGGTCGGCTGCCACGGCTCCAC 24515 33 93.9 28 ...............................GA CCAACTCCTCCACCGCTCCCCCGGCACC 24576 33 87.9 28 C............................CGG. TCCGCCCGCGCCCGGTCCCGGCCACGCC 24637 33 93.9 28 ...............................GC CGAGGATGGATGCCTTGGAGGCGGCGGC 24698 33 90.9 28 .............................CGG. TGTCGGCGCCGGCCTGGTGGAGGTGGTC 24759 33 84.8 28 .........A...................GAAC TAGAGACGATCAAGAAGCGGTGGAACGG 24820 33 87.9 0 .............................CGTT | ========== ====== ====== ====== ================================= ============================ ================== 20 33 92.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Left flank : CGCCCAGCTCAGCGCTGAGGTACTGGCTACCGTGCAAGGAACAGAACTGGAAACCTGACAGCTTCCCGATGTCATGCAGACCAGCACACAGCCCCACGACGTTTCTCGCACGCTCCAACTCACCCGCCAACCCCATCCCGTCGGCAATCCTCGCCCGTTGGTTTTCGGACAGGTAGGCATCCCACAGGTGCAGCGCCATCGCGGCAGCGTCCAACAGGTGCCGGATCAGCGGATACGGCGGCAGCCCCGGACTTAAGCCCCTCGACTTCCCCCACACTGACTCATCCGGCGCATCCCACTTCTTCGCCATCATCGCCCTCTCACCCCAGCCAGCAAATGCCGTCCCAGCACTGAAGCCGGCATTCAACCACCCCCCACTGACAGCCCTACCTTCCCCCGCCTCGGTAAGCTGACAACATGCATCCCTACCCGCCCCGACACGGCGCTCCCCTGAAAGCAAAGAACAGGCAAAGCCCCCTTTAAGTGCCAGGTCAGAAAGG # Right flank : TGGGTCCTTGCTAGGGCGTGTATCGAAAGTATTTCCGGAGCGGTCGTCGGGCCGCTCCGCTACGGTGCGGCCATGGCGAACTTTGTGCTAATTGCAGGTGCGCGACTTGGATCGTGGGCGTGGGACGATGTGGTGCCGCATCTGCGTGCGGCCGGCCATGGCGTCCACCCGCTGACGCTGTCCGGTCTCGCTGAGAAGCAAGGTGTGCCGGCTGGTCAGCAGACCCACGTACAGGACATCGTTGATGAGGTCGAGCGCCAGGACCTGCGTGAAGTCATTCTGGTAGGTCACAGCTACTCGGGTGTCCCGAGCGGTCAGGCCGCCGGGCGGGTCGGCGACCGGCTAGCGCACGTGGTCTTCCTTGACTCCAGTGTTCCGGCCGATGGTGAACCGTTCGTCTCCGCCTGGCCGGACGGCGGGGCGATGGTGAGGGCATCGATCGCCGAGAACGGAGGATTCTGGCCGGTCGCGCCCGCGGCCCACTTCGAGGGCCACGGTCT # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26614-27073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000021.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 26614 33 90.9 28 ..............................ACC TGCTGGCCGCCTGATCCGAGAGGACATC 26675 33 100.0 28 ................................. CCCGGGCACCAGGCCGACAATGACGGCG 26736 33 93.9 28 .............................A.C. CGGTCGGGCGGGTGGCGACCGCGTTCGA 26797 33 93.9 28 .............................AG.. GGCGGCGTGCAGCCACTTCGTGGTCTCC 26858 33 97.0 26 ...............................A. GACGAGGAGCCCGAGGACGAGCCGAC GA [26887] 26919 33 90.9 28 .............................TAC. AGAACCTCCAGCGCGCGCTCTCCGTCGA 26980 33 97.0 28 ..............................T.. CGCCGTCGTCACCGTCGATCGTGTACGT 27041 33 90.9 0 ...............C...A............T | ========== ====== ====== ====== ================================= ============================ ================== 8 33 94.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : GCTTCGTGGTCAGGCCGCCACGCGAGCGCCCGAGCCCATGGTCGTCCGGCTCGACGGTGACGCCGCCGGGCGGTTCCTTCTGCAGTTCCCCCTTTTTCCTCGCCCCGGCGCCGTGCTGGTGGGCCCGGCACACCGTGGAGTCGACGTTGATGTCCCAAGTGATCAGCTGTTTCGCGTCGGCCTGGGCCTGCAGCGCGGTGAAGATCCGAAACCAGGTGCCGTCCCGCTGCCACCGGCGGAACAGGTCGTACGCCCGACCCCACGGTCCGTACTCGGCGGGGAGGTCCCGCCACGGGATGCCGGTGCGAACCCGGAACCGTATCCCGTCGATCAACTGCCGCCTGGCCCACATCGGCGGCCGTCCAGGCCTCTTGCCCCTCGGCAACAGCGGTTCCAACACCGCCCATTGCGCGTCCGTCAGATCTCCCCGTGCCATGGCCCAAGATCATCGCACGGTGAAGATCCACTTTCGATACACGCCCTAGTGCGCCTAGGAAACG # Right flank : TGGAAGGGCCACCACGCAGGGCGACACCAGACCACATTGGCTGCCCCAAACGGCCAGCCCGCATCAGTCACTCAGCGTGTCCACCGAATTGATGGGCCGGGAACACGCTGCCACCGGGAACTGGTCTCGGCGACGGATTCCCTGGGGAGAATCTGGGGAGTATCCGCGTCGCTGGGGAGCGCGTGGGGAGAATCGACCACACAAGACGGCACGCCCGTGAAAGACGCTGAAAGACACAACTCCCCTGGCCAGCAGTGGGAATGGAGGAATCACCGCAGGTCCGCGCCCCTAACCGGACAACTTCTCCGGGAAGACCACGAGGCGGGCCCCGGCCCGGGCGGCGTCCTGGACCATGGCCGCCACGGTGGCCACGTTGGCCTCGACATCGCCGGCCTCGGCCTGCGCCTGTGCGGCGGCGATGCGGAGCGGGCGTGAGGGGAGCGGATGGAGGCTGTGCTGGGCTGCGTGTTCTGTCACGGGCCTTCACCCTACCGCCGCGC # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:-0.02, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3427-3097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000066.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig66.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3426 37 100.0 35 ..................................... GTTTGATGACGCCGGTCCATTCGAGGTGGTCGCCG 3354 37 83.8 37 ...........T.C....AA...............AC ACCTGCGCGAGCAGCGTCTCCGTACCCGACCACTGCC 3280 37 86.5 36 ....T......T.C.....................AT GACAAGGCGCTCAGCAACGTCCGCGCGGTCACCGGC 3207 37 86.5 37 ..............T..............C.G...AC CCTCTCCTGTACCCCATCGTGGGAGTCGAGCCGCAGC 3133 37 73.0 0 C..A....T.....T.T.....TT.A.........AC | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 86.0 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCACG # Left flank : AAGAACGAGGCGGTCGGTGGTCAGCTGAATGTGGGCTGACGAAGAAGAGGAAGTCACGTGTCATTCCTGGTTCGTTGGAACGACCGGCCCGCGCTCTGCTAACGCGCGGGCCGGAAAAGGGCATGCTGAAGACGGCCGACGGCAGCCATATTCATCAACCTCCCTGTCCCGTGATCACGCGTCTCTCGCGCTGGCGTGACGGTAGCAACCTCTCGCCGGCCTGGGCAAAGCGTTTTTGGTAGACCATGGCGAGCGCAGCGGCCTCGCTGCCGGCGCCTTTGGTGACCAGTGAACGCGCCGACCTGCTTGTCTCACGGCCACTGCACAAGTGCAGCCGATATGAGGCAGGGCGTGAGACTGTTCAGCGAAATCTGAGACCCTACACAACGGAGGTGTACAGCAGTTCGCCCGGGGCAGACAGGAAAGATCCGCGAAAGACTGCGGGGCGACCGAGGATCGCAACTCCTTCGGCTTTGGGCCTCTGGTCACAGCCTCACCGC # Right flank : ATCGACATGGACAACTTGCGTACGCCGGTGCGTGTGATTGAGACGGGGCAGGTGCTTAGAAGGCGCCCGCTCCAGTGCTTGTGGAATGGGCCCTGACCTGGGAAAACGTGATTTTCTCCGCCGTCCCCTCGGACACCGGGGGACGCATGGGGGAAACGTATCTTCCCGATGACTGGGGGACGCGATGTCCATCTGACGTCCGTACGCGCAGGATCTCACATCACCTTCGGATTAGCCGACCTTCGTTGAAACAATTCCGCGCCCCTCGGCGTTACGGATCTTGAAGCCGAGGAAGGGAAGGTGTGGGGCCTGAAGCTGTTCCACATGACACAGAGCGGCGCGGCCGAGGTCGCGCCGCGTCTTGCTGAGACGGAAGCGGATGTGCAGGCTCAGGTCGAGGTACACATGGAGACGTTGCTGGGCGTCCGGTTCCTGGCGAGTGAGTACAGCACGGGGCCGGTCCATGGGGGCAGGATCGATTCACTCGGTCTGGACGAGAA # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11102-10555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000069.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig69.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11101 37 97.3 36 ....................C................ TCTGTGTCATGGTGGTGCAGCCCCGGAAACGGGGCG 11028 37 89.2 36 ...........T..T.....C..T............. TGCCTCCACAGCGGCTCGCACTTTTCGCCGTCCGGG 10955 37 100.0 36 ..................................... ATCGGCGCGGCGGCGGCGAAACGGCTTGTGCCGCAG 10882 37 100.0 36 ..................................... GACTGGGACATGTACCACGACGTCGGCCTCGACAAG 10809 37 89.2 36 ..............T.....C.........A.T.... GCACGTACGCTCGGAGGTGCTGCGGCCGGGTCCCGA 10736 37 89.2 35 C.............T...A.C................ GGATCGTCGGTCTGCATCCGCGAGCATCACTTCGG 10664 37 89.2 36 C............C..A...C................ CCCATCGCCGTCTTCTGGTAGACGACCGTCGTCGGC 10591 37 83.8 0 C.A...........T.....C.TT............. | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 92.2 36 GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Left flank : CAGCCGTTACCCTCGCATCCCTGCTGATGTGGGCGTGACATTTGACGACAACTCCTAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAAATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACTGACAGCATCCGGCTCTACCGGCTGCCCGTCGACGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGTCCAGCCCCATCGTGGAGACCTTGTACTCTGACGGACCATGACGCCCGCTAGTCGACCGACGGGCGGATGCGTCTTCCTCCCGCCCGCCTGCTTCGGAACCGGAAGCACACACGCGACACGCGGATCGCACCGAAGCAAAATGTCCGCATTCAGCAGCTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGGCAGC # Right flank : ATCGACATGAACAACTTGCGTACGCCGGTGCGTGTGATTGAGACGGAGCGGGCGCTTAGAAGGCGCTTGGTGGATCACGAGTCACTCCCTTGCTGACCTGCTTCTCTTTGCGTGCCGCGCGGGTCACCGACTGATCTTCGACACGCATTCGACACGGCTCGGCCTACTCGTACACGGTCGCCGCTTGCAGGGCTCGGGCGAAGAACATCCAGTCACCACCGGGCGGCAACTCCCGGCCGGTGTTGCCGTACCAGCCGTCCGCATCGTCGATCCAGGCGGCCAGGGCCTCCAAGAAGCTCGGAAGGTCCGCGTTCTCCCATGAGCTTCCTTCTTCGGCGTGGCTGCGGCGCAGGGAACGGACGAAGGCTGCCAGGTCTTCTCTGCTGCCGACGTGATCGGGAGAGGTGGTCATGCCTGCGGACCCTACTCGGCACGCCAATCTGAAGGCGCTCTGTGCGAGCGGAGCTAGCGGTTGATCGGAATCTCGTAGACGATCTCGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 48536-47958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000045.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig45.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48535 29 100.0 32 ............................. GGCCCGCGCAACGCCTTCGCGCTGCTAGACGC 48474 29 93.1 32 ............T..A............. GCCCACAGGGTGGCGATCCTGGAGCACGGCAA 48413 29 93.1 32 ...........................TT GGGCCGACGTGTACGGCGACATCTTGACCGCA 48352 29 96.6 32 ........T.................... GCCTCACTGACCTGGGCGTCGAACACTGGGTC 48291 29 93.1 32 ........T.....T.............. CTCAGCGTGGCCTACAGTGGGGAGCTATTCAA 48230 29 93.1 32 .....T........T.............. TTCGGCAACGTCTGGGCGCTCGCGGCCCGCTT 48169 29 93.1 32 .......T............A........ ACCCCGGTGGCCGGGCCGACGCCGGTGGTGAA 48108 29 100.0 32 ............................. GAGGGGAGGCCGAATGTGGTGGAGTAGTCGAA 48047 29 100.0 32 ............................. GTCGGCCTGCGCATCATCGTCGACAGCGCCGA 47986 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AGCCTCGACGACCTGTCCAGCCCCATGCACTTCTCGTACCGCGTCATATCACCGCTGCACGCCGTCGGCCCGTGGAGCGGTGGCACGGCCGAGTTGCTCCTCCACCGAGTGCGAGGCCTGGACTACCGGCCGCCGGGCCTTGTTCCGGGTGCCGCCCTTCCACGTCCGCCCGGCCGCCGCCCCGTCGTCCCTTTCGTCGTCGTGCGCGGTCACGGCCCCGACCCCGCTCACCCCGCCGTCGGTCACCGCGCTGTCTCTCTCGGCTCGGCCGTCTCCTCGTCCGGCTCGGTCGCCGCCCCAGTCCCGGGCCGCGCCGTCGTGCTGCGCGACCCCTGCCTCCGTCGTCCCGTACGTCGACGCCGTCGCGGCGGGGAACTGCTGCTCGAGGCGGGAACGCCCGGGGTGTTGACGCCCGCCTGCGGTACCGTACGTCCGGCGTCCGGGCAGCCCTGTTCCAAAGCCAGTCCCCGCATCCGCGACGCCCGCTGCACCGCCGGCCT # Right flank : CCCCGGCTACGAGATCTGGCTGGCGCCAGCCGCACCCGGCTGGGTGAATCCATCGGGTTGGCGGGACCCTCGCGGGGGTTGCGGTGTGGTGTTGTACGTGCTCCCGGTCAGCGAGATGCACATCAGGGAGCCGGGGCTCGTCGTGGTCGACGTCGCGGCCGCCGACGATGAACCGCCCTCGCTTTCCAGCGGATGCTCGCCGGCCGGTGGGCGACAGTGACAGCGGAGAGCACCACGCGGGACCCCGGACAGCCCGGCGTCCGGCTGCGCTGCTACCTCGACCCGCGCCAGGAACTCACCGCCGGTAGTTGAGGCGGTCACGGTCTGAGACGGTTCATACCGAGGTACCATCCCTCGCCGGACAGCGGTACCTGCGTCACGTCGACGTTGGTGCGGTTGCGGTGCGGGCGGACGGGGTGCCTCCGTCTCCCGGTGCTGTCCCGGGCGATGTCGACGGCCACCTTCATCACCACCTCGGGCTCGACCAGCATCACCTCATC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59182-56976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000045.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig45.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================== ================== 59181 29 100.0 33 ............................. CACGATGGTGGCGATCTCGGTGACCGGGCTGAA 59119 29 100.0 32 ............................. CCCGCCTGGATCTGCGCTGGCTCAGGCTGAAG 59058 29 100.0 32 ............................. GTGGGAGCCGCCGCCGGCGGAATCGGCGCGGT 58997 29 96.6 32 ............................T CCCTCCCAACGCCCGAAGACCGGGCCAAGGCC 58936 29 100.0 32 ............................. ATCCGCCGTGACGCCCTCGACCCGAACCACCG 58875 29 100.0 32 ............................. CCCCCGCACACCGCAACCCCAACCACCAAGGA 58814 29 100.0 32 ............................. GACGTGGCCCCGGCCGGTCCGATCTTCATGGA 58753 29 100.0 32 ............................. GCCCCGCTCCCGCTGGTCGTGGACCGCGCTGG 58692 29 100.0 32 ............................. CCCGTGCTCGGGTCCTGCCCCTGCTCGAAGAA 58631 29 100.0 32 ............................. TTCTTGACATCCCAGTCGTTGGATCGGTCATG 58570 29 100.0 32 ............................. CGGTGGCTGGCCATCAGCTTGGCGGACGGCTC 58509 29 100.0 32 ............................. GCAACGAGCCGTCGGTCACTGCGGTCACCAGC 58448 29 100.0 32 ............................. GTCACCAACCCGGACCCCTGCCGCCCGGCCCA 58387 29 100.0 32 ............................. TGGGCGGCACGCCGGCGGAGGACGCGGCGGGC 58326 29 100.0 32 ............................. CAGTCGGCCGCCGGCCTCGCGGCCGTCAACCG 58265 29 100.0 32 ............................. CAGGTCCCGGGCCAGCGGCCGGGCGACGAAGA 58204 29 100.0 32 ............................. GAGCTGATGGGCGGCGGCCTTGTGCAAGGCGG 58143 29 100.0 32 ............................. CATCGAGGTCCAGTCCATCGCAACGCGCCGTG 58082 29 100.0 32 ............................. GACGCCGGCGCTGGAATCCGGTGATCGCGGTA 58021 29 100.0 32 ............................. CGGATCACCGCACTGACCAACCGCGAGGATGC 57960 29 100.0 32 ............................. TGCTTGGTCCCGACCCAGTCCGGTCCGGCCTT 57899 29 100.0 32 ............................. GAACTCCCCAACGGTGGCCTGACGAAGTGGCT 57838 29 100.0 32 ............................. GGGACAGGGTTCGAGCTGGAGGTCAGCCTCCC 57777 29 100.0 32 ............................. TCCGACGGCGTCCACAGCGAGGACACCACCAG 57716 29 96.6 32 ....................T........ GACGTGAAGAGGGGGTACCGCTGTGCGCACCG 57655 29 93.1 29 ............T...............G CCGACCCCGCCGGCCTTCCCGGGCAGGGA 57597 29 82.8 32 .AA..G.T....T................ GCTCCGAAGTTCCGGGCCCGGCGGCGCGGCGG 57536 29 100.0 79 ............................. CTGCGCTCTCCCGCTCCCTAAGCGTGCGCCTTCTGCTCCCCGCTCCCAGTTGCCGGGCCAGCTCCCGGTCGGGAGCGTA 57428 29 96.6 31 ............................G TTTCGCTCGTCGGGAGGAATCCCGGCACGGG C [57403] 57367 29 96.6 32 ......T...................... GTGCCCAATGAGCCGCCGGTGTTCCTGGACTG 57306 29 93.1 33 G...........T................ GCGGACTGGACGCAGAAGGCTGTGGAGTACCTG 57244 29 93.1 32 T........................C... ACGAAGGCCGCGGCCCCAGTGTCGTACCCGGG 57183 29 75.9 27 ................G....CCCTC.A. GTCAACGTCGTCCAGGTCGACGGAGAC T [57163] 57126 29 96.6 32 ..............T.............. GCGGTCGGCGCCCGGCCGCCCGTGTCCGGCTG 57065 29 100.0 32 ............................. TGGCCCTGGATCGCCGGCGCGCTGGGTGGCCC 57004 27 89.7 0 .....T.......--.............. | T,A [56979,57003] ========== ====== ====== ====== ============================= =============================================================================== ================== 36 29 97.5 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGCGTCAACTACGACGGGCCCGACTACGGGGACGAACTCTGGTGACCGTCATCGTTCTCACCAACTGCCCCGCCGGACTGCGCGGCTTCCTCACACGCTGGATGCTGGAGATCTCCGCGGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGAACGAGATCCAGCAGTACGCGGGGCAAGGCCGAGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCATCCGGCCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACGCACCCCCCACCGCTCCGTCTCCCCGAAACGGCCCGCCATCCGGCTGGAGCAGGGCCGCCAAACGCCGACGGTTCGGGAGAGGCTGATGCACACCGGAAGTCTTTTGTCTCATTTGTCGGAGTCGGAGAAAGTACTCGGCAACCGCCCCCAGCGCCAGTAAAACCGCAGGTCATTCAGT # Right flank : CCTTGGCCTCCGCCGCGTTGCGCGGTGTGTCCTGCTCCCCGCAGACGTTTATGGCGCCTCTATCCGAGCAGAGTGGCCGCTGGCTTCGTTCACTTCCAGCGACAGCGTTTGTCGATCTGTTTCAGCAGCAGTTGGTGCTCGGCGTCGCGGTGGGTGTTCACGAGAAATGACGGCACTGCGGCTTGGCGTGTCGGCGTGCAGGTCAACGTGCCCAAACGATATGGCTGAACGTGCTGTGTGCGCCCCAAGGCATCGGCGGTTGTATGGTCGACGCCTCAATCAGCAGGAGGGCAGCGGCAGGGCATGCGGGTGACGATGACGAGCGCTGCGGCACGGACTGGCCACGCGAACGAGGACTTCACCGGCGCTGTACCGACGGGAGTCGTGCTAATCGACGGCGCCGGCATCGCCGGCACCGAATCGATCTGCCGGCACGGCGTGGCCTGGTACGCCAGCCACCTGGGAGGCAGCCTACTCAGCCTCCTGTCACGCGAGCGGGA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 68904-70567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000045.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig45.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68904 29 96.6 32 ............................A TCTGGTCGAGCAGCTTTCCGCGCACGGCGAGG 68965 29 100.0 32 ............................. GGGTTGGGTGTCGGCGAACGAACTAGGAGCCG 69026 29 100.0 32 ............................. CGGGGTGCCGGCACCAGAGGGGCCCCGGCCGG 69087 29 100.0 32 ............................. TGCCACGAGACCGCCGAGGAGCTCGCCGCCAA 69148 29 100.0 32 ............................. CTTCTGTACTCCAAGGGCGTCAACGTGGTGCA 69209 29 100.0 32 ............................. CAGCCAACCTCCGCTGCACCCACAGCAGCACC 69270 29 100.0 32 ............................. TCGGCGAAGCCGGTGCACAGGATCACGGCGAC 69331 29 93.1 32 ...............A....T........ CGTCTCGCCCGGCACGTCCTCGGCACGCTCGC 69392 29 82.8 21 ........G.....T........C...GG GCGGTTCCGAAGCGGACGCCT Deletion [69442] 69442 29 100.0 32 ............................. CCGTCGGCGACGATGTCGGCGCACGCTTCGGC C [69447] 69504 29 86.2 32 ......T..........AA......C... CTCCACCCCTGGTGGCGCGGGAACCGCGAGAT 69565 28 96.6 32 .....-....................... GACTACACCGCGCTCTTCGCGAAGGAGTGCAC 69625 29 82.8 33 .......AT........A....CA..... GGCAAGAAGGGCGCCCACGGTCGCCGCCGGCGC 69687 28 89.7 32 ...........G...........-.G... GGGACGCCCGGCTCGGTCCCGGAGGCGGAGTC 69747 29 96.6 32 .........T................... CCGCCTATGCCAGGATGTGGACCCATGGATGA 69808 29 93.1 32 .........T.............A..... GGCCGGCTCCGTACGGAAGCCGTGATCGACGC 69869 29 89.7 32 ..............T..A.......C... GCTTTCTCGGCTGCCCTGCTCGGCCTCGGCGA 69930 29 89.7 32 .................A.....A.C... ATCCCGCTCACCGTGTACGGAGAGGTGAGCAA 69991 29 96.6 31 ....................A........ GCTGCCATGGAGGTGCCGGCTTCGACGCCAG 70051 29 93.1 32 A......................A..... CAGTACCAGACCGCCCTGGCGCACCACGCGCC 70112 29 93.1 32 .....................G..C.... TGGGCCAGCACCTCGCACGCGGTGCTCTTGAA 70173 29 89.7 32 ............G....A.......C... GAGTGCGCGTACCCGAGATGCACCCGTCCTCG 70234 29 86.2 31 ...T.............A......A.T.. GTCGCCCGGGTGGTCTGGGCGGTGCGCAGAG 70295 29 96.6 32 ..............T.............. TCGCAGTTCTGGGTGAAGCGTCCCTTATGGGG 70356 29 93.1 32 .................A......A.... TCCCGCAGCGCCCTGGTGGGGATGGATGCCAA 70417 29 100.0 32 ............................. GGGTTCCGGGCGCCGGTCGTGCGGGCCGGCTT 70478 29 96.6 32 ...................A......... TCTGGCCGAGGAGACCGGAAATCCGCTCCTCC 70539 29 89.7 0 .C.....T....................T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 94.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCCGGCGTGGCCTTGCCGATGTCATGCACACCCGCAAGCCACACAGCCAGGGCACGGGCATCCGCATCACCCCCCGGCAACACCCCGGCCACCAGAGCGCGCACCCCCACCGGCAGCCACCGATCCCACAACAGACCCGCCACCGCAGCGGCATCCTCCATATGCCGCCACAACGGCAACCACCCCTCGGAGTCCCGGTCAAACTTCGCCCACACCGACCGAGCCGGCCCCCCAAGCCGGCCCAACAAGCCGGAACAAGCACTCCCCTCACCACTCATGAGCGATAGATACAGGCAGCAACCACCACCCCACACAAAAACAAGCCAACCGGAGCATCTGCAGGGCAAACAGCCACCCCCGTCACGTAAAATCATCCGCTTGCTCTGATCCAGCGAGAACCACCTGCGAGACCGAATACCCCTAATGCCCCATTGGCCGGAACCCGCAATAGTCACTGAAAACGTCTCCCTGCGGCAATAAACCCACAGGTCAACAAGT # Right flank : TGCGGTCACCTCCACCACTCCCCCACGTCCTGTCCATGACGCATGGTGGGTTCAGGCCCGTAAGGTCCACGGCGAGCGGGACAGCACCCGGGCGCTGATCGAGGTGCTGCTGCTGGCCCGGCACATCCTCACAAGTACCTGGTCGCCGGGCTGGCCACCGCCCTGCGGGCCGGGGCCCTGGCCGCGGACGCGGTCGCTTTGGAGGCCCGCAAGGCCGCCCAGGCCGAAGACGACCCGCCTGTCACCACTTTACCCTCAGGCGGCCCCGGGTCGGCGACGGTGACGTTTCTGCACGAGTGGCGTCTTGCCCACCTGCCGCCGGACACCAGGCCGCTGCCCTCGGTGACCCCCTATGACCAGTTGCGCCGCCACCGTCGCGCCAGCGGCGGCGCCCATCCAGAGGGAGAAGCCCAGTGACCCTGCCCCGCCAGCGAGGCTTGACCGAGCAGACCGCCGACGCCGCCATCGACACCGCCTGCCGCATGCTGCGGCTGCGGCTG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4580-4248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000077.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig77.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4579 37 100.0 36 ..................................... CACGTGGTGTCCGGGATGAACTCGGTCTATCCATCG 4506 37 100.0 36 ..................................... GTCCACAGCGTGTCCGCTCCGGCCGACGGCTGCACC 4433 37 97.3 40 ........T............................ ACCGCCGTCCCCCCCCCGCGCGGAGTCAGGACCCGCTCGG 4356 37 91.9 36 ...................G.C.T............. GGCGTCGGCAAGACCTGGATCGCAAGCCGGCTCGTC 4283 36 91.9 0 .............-.....G................T | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 96.2 37 CTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Left flank : CTGTTACCCGATGCGCACCCATAGAGGAGCGAGCGGTAGGCTGTTTCCACTGCTCACGCAG # Right flank : GCGCACCACGTCGGTGGCCAGGGGGCAGTGGCCTTCTGGCGGTTGTCCTGGGGCGATCGTTGATCGGTGAGTTGCACCTGTTGTGTCTTCGGGTCTTCGACGCTTCTGCTGGCTTGGGCTCGGATGCTGGAGAGGTGGTGGCTGCCAGGTCAGCAAGAATATAACGGCTTCGCGGCTCGGTGTTTCCGGTGCGGTCCAGGCATTTGGGCGGTGCTGATTCGGGTCTGTGGCGGGCCGGTGTCCGAGGGGGCGGATACGGTCTTGGTCTCGGCTGGAGGGTGCCGTGCGTCTGGTGGGGGAGGAGAGGGTGTAGTGGCGGGTGTGTTGTATGCGCATAGCCTGAGTGGTGTCTCGGGGGTGCGGCACACGCTGGAGGACCACTTGCGTGGTTCGGCTGCGTTGGCGCGGCGTTTCGGGGAGGTTTTCGGGGCCGGGGAGTTGGCGGAGTATCTGGCCTTGGTGCACGACGTGGGCAAGGGGGCGTGTGCGTGGCAGGACGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 328-1331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000070.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig70.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 328 37 73.0 51 .C..T....A...C.A.AA...A............GG GCCGAGGATCGCAACGTCGTGCCGCCCATGGTCCGCGGCTTCAGACTGGCA 416 37 94.6 36 ..........T...T...................... CTGCTGTCGTGCGTGGTGCTGCGCTGGGCCGTTGGG 489 37 97.3 37 ....................T................ GGGTTCACCAACCCGTTCGTGGCGCAGCTGTGGGCCG 563 37 100.0 34 ..................................... GACAAGCTGGCGAAGAACGCCGAGGAGCAGGGCA 634 36 94.6 38 .........-T.......................... GCGAAGTCCTTCGCCCAGGTGCCCCGGTCGTTGAGGAG 708 37 89.2 36 C..........T.C....A.................. TGCGACGGTGGGAGGAGTTGGACGAGTGGTCATGTG 781 36 89.2 36 C..........T.-........A.............. GAACTGCTGGGCCGGATCGGCGACCTGACCGGCGGA 853 37 89.2 35 C..A.......T.C....................... GGCACGCTGGAGCACATGAACCGCACCGGCGAGAT 925 35 86.5 35 ....T..C.............A....--......... TCTCGGTGGACGACCGCGCGGTGGACCCGGCTCAG 995 37 94.6 36 C.............T...................... GCCCAGCACCACACCCCGATGCCCGAGGTCCCGCCC 1068 37 100.0 36 ..................................... GCCCAGCACCACACCCCGATGCCCGAGGTCCCGCCC 1141 37 100.0 37 ..................................... ATGCCGCGGGCCCGGCTCACGGACAAGGACGACGAAA CCGGG [1164] 1220 37 97.3 38 ....................T................ ATCTCGTCCATCGTGAGGATGGCCAGTCGCCAGGGCTT C [1234] 1296 36 86.5 0 ..........T.....A.....A....-......T.. | ========== ====== ====== ====== ===================================== =================================================== ================== 14 37 92.3 37 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CAAAGAAGAAACCCGACAGGCCGCCCAGAACGCCGTCGACCAGCTCCGCCGTGGCCTGCCAACACCGGCGACCTACCACACCCTGCAGGAACACATGGCATCCATCCCCCAGCGGGAACTGGAACTGGCAATTAACGCTGGCCACGCCATCGAAATCGCCGGCGATCTGCACCAGTGGGTCGGCCCCTACCATCCCCAACGAGGTATCGAACCTCTTACATGACCATCCAGACCACCAAGCAGCGACTCGTCGATGCGCTGGTCCCATGGTGTGATGGTCAATGGCATAGGAATGAGAGCTTAAAACCCTTGAAGTCCCAACCAGGCG # Right flank : CCTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACCAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAGATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACCGACAGCATCCGGCTCTACCGGCTGCCCGCCGACGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGTCCAGCCCCATCGTGGAGACCTTGTACTCTGACGGACCATGACGCCCGCTAGACGACCGACGGGCGGATGCGTGTTCGTCCCGCCCGCCTGCTTCGGAACCGGAAGCACACACGCGACACGCGGATCGCACCGAAGTCAAATGTCCGCATTCAGTAGCTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGACAG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [15-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1832-2655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000070.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig70.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1832 37 100.0 35 ..................................... TCGGCGTCCGCGAACACCCGGTCCGCGGCCTGGTC 1904 37 100.0 21 ..................................... AGAAATCCGTACGCCACGGAG Deletion [1962] 1962 36 70.3 37 AG...-.AA.AT...G.T.....TT............ ACCCGATGGATATCGGCGGATGTGAGTCCGACGGAGA 2035 37 100.0 34 ..................................... CCATGTCTGCCGGAGGAGCGGAGACGCCCCATGT 2106 37 97.3 36 ...............T..................... CGATTCTGAGGTCGGTGAGGGATCATGACCTGGACG 2179 37 97.3 37 ..........................G.......... AGGTCGTCCGGCGATCCGGTCCGGAACCTGACGCGGG 2253 37 97.3 37 ...........T......................... TTCTGGGAGGTCCGCGGATGGGGCCGCCACGGCACCA 2327 37 100.0 37 ..................................... GGCGTCTGCAACACCCCCGGCTCCGCGCGCCGCGCGT 2401 37 97.3 38 .............................G....... CCAGGCGTTCGCGCACGTCACCGGCCCAGGTGAGCATG 2476 37 97.3 34 .................A................... GAGGCGCGGTAGAGGGCGCCGCCGAGGAAGGCGT 2547 37 100.0 35 ..................................... GCCGACTCCGGCCGGAGCTTCGGCCACCCTCGCGT 2619 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 96.2 35 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACCAGCCCAGCTGGCCAACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTTTTCGAGATCGTCGCCGATGAAAAGACACTCCTCACCCTCCTCCATGACCTCGACCAGATCATCGACTCCGACACCGACAGCATCCGGCTCTACCGGCTGCCCGCCGACGGCTTCGACCACGTCCAGACTCTCGGCATCGCACAGGTCCAGCCCCATCGTGGAGACCTTGTACTCTGACGGACCATGACGCCCGCTAGACGACCGACGGGCGGATGCGTGTTCGTCCCGCCCGCCTGCTTCGGAACCGGAAGCACACACGCGACACGCGGATCGCACCGAAGTCAAATGTCCGCATTCAGTAGCTCTGTCGCCTGTCGCTCCACTACTCGGGAGCGAGCGGTAGGCTGATTTTGCTGCTCAGACAGC # Right flank : TAGCAACCTCGCCCGGGTCCGCTCCTGCTCGGCGGACCGTTTGCAGGGTGATCAGCTAGTCGGGGATCTCATGCACACCCATGGATCTTAGGTGGCGGGCGCCCAGTGCTGCCGGTTCCCTTCACCGACTGATCGGGTGCAGCACCTCCCAGCGATCAGCTGGTCGTCCGGCCGGGCCGGCATCCGGCTGGGCTGCGCAGAGAAGCCGCCGTCGTTCGCGCTCGGGCTGGGCCGGACCCGCTCGATGCGTCTGCAGGTCATCTCGCGTATCCCCTGAACGGGTAGAGGCTGAGGTTTCCCGGGCGCGTCGCGTGGAGTCGCCGTTACGAAGAGCACGACCAGTGATCTCCGAAAGGACTCCGTCGTGCGTTTCGCCCAGACCGCCGCCCCCGCCGCTGCCCTCGCGGCCCTGCTCACCCCCGCCGCCGCCCATGCCGTCCCGGCCGCTGATCCCATCGGGCGCGCCGCGGGCCGGGCCGTCACCCTGCCGGTGCGCGACG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1438-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBD01000087.1 Streptomyces lavenduligriseus strain NRRL ISP-5487 contig87.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1437 37 75.7 36 .C..T....A...C.A.AA...A............G. GCGGACGGCACGATCTATCTTTGCGGCAGAACGCAG 1364 37 91.9 36 T.............T.A.................... CCGGAGGCGGCATGGTGAAGGCTGGCACCTGGCAGT 1290 37 94.6 35 C...........................T........ GACTTCTACGTCTCGGTGACCGCTGACCAGCTCAC CGGC [1267] 1214 37 97.3 36 ....T................................ ACCCGCTCACCCACGCGCGCGGACACCGACGGCAGC 1141 37 91.9 38 ..C.........T....A................... CACAGCGCCCAGCGCAGGCGCGGGTCACGGACCCTCGG 1066 37 97.3 36 ...........T......................... ACGTCGGCCTGGCGGACGGGGGCCAGGTCCTCGAAC A [1048] 992 37 94.6 37 ....................T.........C...... ATCAACTCCGCGCAGGCCCGGCACCCCGCGCTGCCCC 918 37 94.6 35 ............G....................T... GCCCTCTACGTCGAGCTGAAGCCCCGCGGCTGGGT 846 37 91.9 37 ...A......T.........T................ ACCACCTACGAGGTCGCCGCAGACAACAACTTGCCCG 772 37 97.3 36 ...........A......................... GGCATCACCCCGACCACCGGCAGCCCCGGCGGCTTC 699 37 94.6 36 ...........T...........A............. TGCTTGGCGGCGCGTACGTTCACTCGGGCCTCGACC 626 37 94.6 31 ..............A...............C...... AGTTCGGCCGGTTCAGAGTGACCGGTTACGG 558 37 94.6 36 .G..................T................ CGTGAGGGCGCGGCGTGGCTGTGCACCGGCTGCAAG 485 37 91.9 36 .................A....A.....A........ AGCGCCTCGTACACCTTGCCCCGGCCGGCCACGATG 412 37 100.0 37 ..................................... ACGTTCGACACGGGCCAGGAGAAGGAAGACCGGCTCC 338 37 94.6 36 .C........T.......................... GTCACGGACATACGCCCTGACCGGGCCTGCATGGTC 265 37 100.0 38 ..................................... ATCTCGTCCATCGTGAGGATGGCCAGTCGCCAGGGCTT 190 37 86.5 0 ..........T.....A.....A.T.........T.. | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 93.5 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CAAAGAAGAAACCCGACAGGCCGCCCAGAACGCCGTCGACCAGCTCCGCCGTGGCCTGCCAACACCGGCGACCTACCACACCCTGCAGGAACACATGGCGTCCATCCCCCAGCGGGAACTGGAACTGGCAATCAACGCCGGCCACGCCATCGAAATCGCCGGTGATCTGCACCAGTGGGTCGGTTCCTACCATCCCCAACGAGGTATCGAACCTCTTACATAGGAATGAGAGCTTAAAACCCTTGAAGTCCCAACCAGG # Right flank : CCTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACTAGTACTGCAACGGTGCTTGCCGTGACTGATGGCCAGCTCAGTCGTTGGTGTGGTTATGGGTGGGGACCTTGCTGATGTCAGGCTGTGGGCCGGTGAA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //