Array 1 201931-203546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCI01000020.1 Corynebacterium jeikeium strain Cj19409 212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201931 29 96.6 32 ............................G CCGATCCTCACCGCACCCTACGAATCAGCCTA 201992 29 100.0 32 ............................. AAGCGCTTCTCAGACGACAGCAGCTTCTCCGT 202053 29 96.6 32 ............................G CCACGATCCAGCGACTTCTTATCCGACTCGAA 202114 29 96.6 32 ............................G GGCGCGACCTACCGAATCCATTTCACCGAGCT 202175 29 96.6 32 ............................T GGTCGAAGCTGCTCGCGGAGACGAAAGCGTAT 202236 29 100.0 32 ............................. CTCCCCAAAGCTCCCGATCAAGCACCCTTGGC 202297 29 96.6 32 ............................T ATCGCGGGCAGCGTCAGCGTCGCGCTTAATCG 202358 29 100.0 32 ............................. GGCCAAACCGTCACCATCGCAGGCCGGAACCT 202419 29 100.0 32 ............................. TCCCTCTTCCTACCCTGACGGAACCGTCAAAA 202480 29 100.0 32 ............................. ACCCAAGCGCGTATTCAGATCAGCGAGGGTAG 202541 29 96.6 32 ............................G AATACGCGCCGATCACACGCACCCCGTGGCGC 202602 29 96.6 32 ............................G GAAGGCCAACTCATCGCCCGCGTGGGCAGCGA 202663 29 96.6 32 ............................T CTGGTTCGCGCGGGGCTACACGCCCCTCCCAA 202724 29 100.0 32 ............................. CAGCAGCAACTAGACAGCTGGTGGCAATGGAT 202785 29 96.6 32 ............................G CGTACAGCTACCGGCACATCCCGGAGCGCAGG 202846 29 100.0 32 ............................. GACCGCAAGCCGGTTTTCGACGGCAAGGTTGA 202907 29 96.6 32 ............................T ACACCACTTTGCGTTTGCGCAGGTCAGGCTGC 202968 29 100.0 32 ............................. CACATCATCAACAGTGACGGTAAACATCAGCG 203029 29 96.6 32 ............................T GCAGGCAGCCATATCCAGCACCACACCGGATT 203090 29 100.0 32 ............................. TCAGTGGGAGCCTATGCCTGCTGTCAGTGACT 203151 29 100.0 32 ............................. AAGGGAACCGTTTTCACTCAAAAGGCCGTGCC 203212 29 96.6 32 ............................T CACGCGGTTCACGTCGTTACCAAACAGTAGAA 203273 29 96.6 32 ............................G TTTATCGAGGTTCGGATCGAAGATTCTATTGA 203334 29 100.0 32 ............................. CCCTCCGCGCAGTCTTCGTAATAGTGCCCAAA 203395 29 96.6 32 ............................G AACTCGGCCATTGGTGGCCTTGTGCCCTGCCC 203456 29 96.6 33 ............................G TTGGTTACTGGGCGGTTCATGCTGCGCCCTCCG 203518 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : TTGTGATTGGCACGGTGCGATACCGCGGCACACTGCAGATTGACGATGCCGAAAGCTTCAAGAAAGCACTCGTCGAAGGCATCGGGCGAGGCAAGGCCTACGGTTGTGGCTTACTGACACTCGCCAAGCCCATTACCGGCAAGCCAGACTAGGGATATCGCAGTGGCACAGCACCCTTCGAAGTCGCCCATGGATCGTCCGATCCTACCGCGCGTGCAGGATCGGATCTCGTTTCTATACGCCGAGCGCTGCGTAGTTAATCGCGATAACAACGCTGTTACCTTCACGGATGAACGCGGCATCACCCATGTGCCTGCGGCAGGTATTGCTGCCTTAATGCTTGGCCCAGGTACGAAAGTGACTTACGCAGCGATGGCTCTGCTAGGGGACTCCGGGGTTTCCGTCGTATGGGTTGGGGAAAAAGGCGTGCGCTACTACGCATCTGGCCGTTCGCTTTCGAATTCTTCGGCAGCGGCGGAGGCGCAGGCGTCAATAGTAAG # Right flank : CCCTCGGTAGTATTTCGGCGGCCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 604-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCI01000027.1 Corynebacterium jeikeium strain Cj19409 219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 603 29 100.0 32 ............................. CAGCCCTTCAAGACATCTAACGCATTCTGTAG 542 29 96.6 32 ............................G CCGATCCTCACCGCACCCTACGAATCAGCCTA 481 29 100.0 32 ............................. AACAGGAAAGAAGTATGAACTGCTGGAAGGTA 420 29 96.6 32 ............................G CGCCTCTAACGCGCATCCACCACGGGGGTGAA 359 29 100.0 32 ............................. TGGGTAGTCAGCTTCTCCAACGGCTCGCCCGT 298 29 100.0 32 ............................. TGGGCATTGAGAATTGCCAGCTGATCCGTCAC 237 29 96.6 32 ............................T CTCTAGGGCGCGCTGTGCGCGGTCTAGCCGGG 176 29 100.0 32 ............................. TATGAGCGTCAAGCGCTCGTGGCTGACGTGGC 115 29 96.6 32 ............................T CCCCATATGCGCAGCGCCAATGCGAGACTCCG 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : CTCGGTAGTATTTCGGCGGCCAGGTAACC # Right flank : CCCCTCGGTAGTATTTCGGCGGCCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3004-2212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCI01000034.1 Corynebacterium jeikeium strain Cj19409 226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3003 29 96.6 32 ............................T GCGCTGCTGCTCTGCGGTCTGGAAATCGCTAT 2942 29 96.6 32 ............................T AGCGACCGAACGTGCCTCCCTCACCGCCGGAA 2881 29 96.6 32 ............................T GGGGCGACTACCAGACCCACACCGTCCGCGTT 2820 29 100.0 32 ............................. GCGCGTTCCGCGTCACACCCGGCGTTCCCTAC 2759 29 100.0 32 ............................. AAGCTAGACCCTGATAGCTACACCTATGAAAT 2698 29 100.0 32 ............................. TCCTCGCCCTCGAGCACATACGGCTCCCAGGC 2637 29 100.0 32 ............................. ACAAGCCCAACAACTCACCAACACAATGACCA 2576 29 96.6 32 ............................G GATGTAGGGGTGATCCGCGCGGGCGTCGCCCT 2515 29 96.6 32 ............................T TATCGACTAGCTAGCTCACTGCGTGAATCTCA 2454 28 82.8 0 .....................G.CCA..- - A [2442] Deletion [2427] 2425 29 93.1 32 ...................C....C.... TATGAGATCGGTAAATCCACCCCACGGAGGTC 2364 29 96.6 32 ............................T GCATACCGTCCCCGCCCGTATACGGGAGTGAT 2303 29 100.0 32 ............................. TGATCCCACCGCTCAGCGAGATCCGCCGTCTC 2242 29 82.8 0 ........................CTTAG | CG [2216] ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.6 30 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : CACCACTTTGCGTTTGCGCAGGTCAGGCTG # Right flank : GCCCGTTCTAGCGACAATCTGGACGACTCGCTGAAGGGGATTTACTTAACCGGAGCTTCTTTTCGAAGAAATGCCAGCTGCTCCTCAATAGTCACCGAGGGCAGTGGCTCCACGTACGGGTTGAAGTGGCCGCCTTCGTGAATGTGAATCGTGGCGCGCTGGACCTTGCCAGCTGCTTTGAAGGCGACATTTGTTGGAGTGGCGGCGTCATTAGACATCACCTGGAGAAGCGCCGGACAGGAAACATTCCCGACCGTCCGCGCCGGCGAATAGAAACCAATCAACGCCAGAATGCTGTTCGACGTGGCCGGTGTACCAACTCACGCGCCTATTCTTCCGCTTCTATAGGTAGGGGAAATAGGCTCTGACGTGCCGTTTTCTGTGGGGCCAGCGGGGCTCGAACCCGCGACCAGCGGATTATGAGTCCGCGGCTCTAACCGACTGAGCTATAGCCCCAGTATGCGTCGCCACTCGATGGAGCGGCTTGCTAACAAAAGATT # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //