Array 1 1439146-1441676 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXO01000002.1 Corynebacterium jeikeium strain NCTC11913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1439146 29 100.0 32 ............................. GCGACCACCGCGAACTCGCCGATGAGCTTGAG 1439207 29 100.0 32 ............................. GAGCGTATTGTCTCGCGCGTTGACATATTGGG 1439268 29 100.0 32 ............................. GCTATCGACGGCCTCACAGACAAGGTTAAGGG 1439329 29 96.6 32 ............................T CGCCCTAATCTTCTCCTCCACCGAGCTTGTAG 1439390 29 100.0 32 ............................. GCCACGGCTGCATGGGAGGGCATTAAGAATGC 1439451 29 100.0 32 ............................. ACCACCGTGGCCTTAGAGGTGATGTAGGTGCA 1439512 29 100.0 32 ............................. GGCAAGGGGTGGGTGGTGACGGCGGACGGTCG 1439573 29 100.0 32 ............................. TGTATAGGGTTATCGCCCCTGCGCTGGGCGCG 1439634 29 96.6 32 ............................T GGTCTTAAAGACCTTCGGCTTAACCTCACGCA 1439695 29 100.0 32 ............................. TAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTC 1439756 29 96.6 32 ............................C GAGGCCGGGGTTATGGGGTGCGGTGAAGGTTG 1439817 29 96.6 32 ............................A GTGCGGGATGAACTGCGCCGCATCCCGAAGGA 1439878 29 100.0 32 ............................. GACGCGATCACCCGCAAGGAAGGCAAGAAGCT 1439939 29 100.0 32 ............................. TCCACCCACCCCTTCTCCACCATCTCTTTAAT 1440000 29 100.0 32 ............................. CAAACGATCCAAACCGGCATCGACGGGTTCCG 1440061 29 100.0 32 ............................. TCCGCCCACCCCTTCTCCACCATCTCCTTAAT 1440122 29 100.0 32 ............................. CAGCGTTACGGTGGCCCCGGTGCTGTGTGGCC 1440183 29 100.0 32 ............................. TCTTCCGCGCCTGCTCCGCAAACGCCATCGAC 1440244 29 100.0 32 ............................. GGCGATAAGGGTGACCCTGGTGGTGTGCGGGG 1440305 29 100.0 32 ............................. GTATCTAGCCCGTCGCGCAACCCCTTGAAAGT 1440366 29 100.0 32 ............................. GTCGACCGCTACGCCCCTAGTACCCTCGGCAG 1440427 29 100.0 32 ............................. CCGATGTAGTAGTTCAGCCGTGTAGGTAGCCA 1440488 29 100.0 32 ............................. GCATCCGTGGTCGATTGAGGTTTGGATGAGGT 1440549 29 100.0 32 ............................. TTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGG 1440610 29 100.0 32 ............................. GCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT 1440671 29 96.6 32 ............................T GAGTGCTGCAACCCCATATCGCGTCGAAACAC 1440732 29 100.0 32 ............................. GGCACGCCCGGTGACCGACTACGCCGCGAGAT 1440793 29 100.0 32 ............................. ACTACTGACGCGCTTGGCGATGGTGACGAGAA 1440854 29 96.6 32 ...T......................... TACCAGAAGGCTGTGGTTTCTGGGAATTCTGG 1440915 29 96.6 32 ............................T GGAACGCAACCGGGATAAAAACCCGCCACGGT 1440976 29 100.0 32 ............................. TACCAGAAGGCTGTGGCTTCTGGGAATTCTGG 1441037 29 96.6 33 ............................A GGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT 1441099 29 96.6 32 ............................T GCGTACGGTGTGATTAACCCGGCGCTCCGGTC 1441160 29 100.0 32 ............................. CCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA 1441221 29 96.6 32 ............................T CTTTCGATCTGCCATGTCATCACCTCCCTAGG 1441282 29 100.0 32 ............................. CAACGCTCAGCACTTGATTGGACTCGTCGCGC 1441343 29 100.0 32 ............................. GTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG 1441404 29 100.0 32 ............................. GAGGGGAGCGCGGCGGCGAACGTGTTTAAGAC 1441465 29 100.0 32 ............................. TTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA 1441526 29 100.0 32 ............................. TCGATCCGGTTGCCGTTATGTAGGTTCACACA 1441587 29 100.0 32 ............................. TCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG 1441648 29 93.1 0 .......................T....T | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.0 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : TATTGATGCTGAGCTGGTGTTGTGGTCGGACTTGGAGGTCGTGGCTTCCAAACGCAATTGGTCAGACGATGGGCCAATCAGATGATGGTCTTGGTTGTATCTGCATGTCCTGCGGGTCTTCGCGGTGACCTCACAAGGTGGCTGTTGGAGATTTCTCCAGGTGTGTTCGTAGGGCGCCCCAGTGCCAGGGTGCGCGACCAGGTGTGGGAGCGAACATGCGACCTGGTGAATGATGGCCGAGCGATCATGGTGTTCCAGGCAGCAAACGAGCAGGGCTTTGATTTCAAGACTCACCGGCATAACTGGGTTCCAACTGATTTCGATGGGGTGAACTTGATTACGCGCCCCAACAACCGGGCAGCTTCGACGAGGCGGCGCGGATGGAGTAATGCGCGGAGGAGGTAAAGCGTCGGTGATCGTTCGCTAGTCCGGTAGGCGGTGGTGAAAACAAGCTGAAGTAGAATTGGCCCAACGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : TCAGGGAGTGCTATCTTGACGCGATTTCCACGGATCACCAGCATTCACCGCTCCTGAAAGGCGGGACGACCTCCAAAATGAAGAAAGCTTTCTATTCAATGCTTAACAGCAAAGAAATTCAATAGAAAGAAACGAAACTAAATTGAAAAGATCGTGGTTACTGATCTTCTGATACTCTCACATAATCAGGACGATGTTCCTTTAGGAAACTCCGTAAGCATTCGCCTGGGTTACTGCCAGGTGAAAAGAGATCGAGGATCTTATCCAACATGTCAGGCGCGATAAACACACCACCTTCGACCGAGTAGTAGACCGCACTCTCGAGTGCATATTCGAATTCTCCCCCTAAGGCGGGAGTAAAGGCGTGGTCAATCCCTGCAGTGACGAACTGCTCTCCATAACGGGAAAGAAATTCTTCGAATACATCCATCGAGGGATCCGCACGCATCTTACGATCCTCTCCGCTTTACCGCACGGTAGCTAAAAACGTGATTGTAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2292449-2292302 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXO01000002.1 Corynebacterium jeikeium strain NCTC11913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 2292448 23 100.0 39 ....................... TCCCACCCAAAGACAACCCCCGGAACCCCTCAGCGAGCC 2292386 23 100.0 39 ....................... TTCCGACTGGGCCATACCCCCAAAGGCCTCGAGCGAACC 2292324 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================= ================== 3 23 100.0 40 ACCCATTCCCGATCTAACGACAT # Left flank : CTGGTCAGACGAAGATCAGGAGTTCGTCGCAACCGTGACTGAGTTCCCGTCGCTTTCATGGCTGGCCCCCGACCGCGCGCAGGCCGAAGCTGGGTTGCTGGACCTGGTGGCCGAAGTCGTTGATGACATGACGCAGGCCGGGGAGACTGTGCCGGAGCCGCTGGGGTTGCGGCGATTCTCGGGGAAGTTCAACGTGCGAACTTCGCCGTCGTTGCATCGGATGCTGGCGATCGAGGCGCAATCGGAGGGCGTTTCGCTGAATACGCTGGTTAATCAGAAGTTGGCGGCGCGGTAGTTGCGGATTTTTATTGACGCCCACTAGCAAGCGGCGGTTGGAGCGGTCGCCTGGCCTGGGAGTTTCGGCGCGACGGAGGCTGCGTGGGGGCTCTTGGCGGGCCGGAATGTCGCTAGAACGGGAAAACGTCGGCGCCCGCAGAGCCCCGCAAAAATCCTCAAAGCCCTGACCTGCGATTTTACCTATTTGCAAACCAATACCATTA # Right flank : CTGCAGGTTGGTTGTCAGCGTTTGCAGGTGGCCTGTCAACATTTCCACCCAGGAAGCCGCGCGAAATTGCAGCTCCTGTACACCGCCACGGGGAACTTGGCATCAAAAAATTTTTGCGCCTGTGGATAAGTCAGATGCCGTCCACAATTTATCCTCAGTGCACCAGATTCCAAACACACTACTCACGCAAAAGGCGTAGGAATACCTCCCATGACGGGGGACAACACCAACGCAAGCACCAGCACATCCGCCACCAGCAAAAACGCCCAACCCACCAAGCCAGCATCCACCAAACCCAGCGCCTACACGCCAGCCAAGCATCACCAGCCCGTAAAACACCTGGTCGATGTGCGCCGAATCGACCCCTCCCAAGCCCGGAAATGGCAACGCTGGGCCGAGAGAGGCGAAGCCGTCCGCCTCGCCCGCGGGATCTACATACCCGCAGGTCTCTGGCGCGAGATCGGCCAACAACCGAACGCGGCAGAAATCCAAGCGCAGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCATTCCCGATCTAACGACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //