Array 1 93267-90597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSJ010000004.1 Acinetobacter baumannii strain CCBH28083 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93266 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 93206 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 93146 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 93086 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 93026 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 92966 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 92906 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 92846 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 92786 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 92726 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 92666 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 92606 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 92546 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 92486 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 92426 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 92366 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 92306 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 92246 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 92186 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 92126 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 92066 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 92006 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 91946 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 91886 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 91826 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 91766 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 91706 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 91646 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 91586 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 91526 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 91466 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 91406 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 91346 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 91286 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 91226 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 91166 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 91106 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 91046 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 90986 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 90926 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 90866 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 90806 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 90746 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 90685 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 90625 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 45 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TCAGGGCGTGGCAAAGGCATTACGTGTGAA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTGCTAAATAACTGTTTTATATAATTTAATATTTATACAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTGTTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTGAGCTAGTCAGTAGAATTTCATATTTTAAATCCGCACTTCAAATATCGAATTAACTTTGCCGTCCAAGTGACTGATTAAGTAGCTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20768-21216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSJ010000015.1 Acinetobacter baumannii strain CCBH28083 14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20768 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [20773] 20829 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 20889 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 20949 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 21009 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 21069 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 21129 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 21189 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCATTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATTTAACCGCCGCAGATACAGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCAGTATTTGTGTATAAGCTGATTACCAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACAGTCTATTCTAAGTACCGATCATGAGGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4715-4208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSJ010000090.1 Acinetobacter baumannii strain CCBH28083 89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4714 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4660 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4652] 4602 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4584] 4535 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 4475 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 4415 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 4355 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 4295 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 4235 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10271-12760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSJ010000090.1 Acinetobacter baumannii strain CCBH28083 89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10271 29 96.6 31 ............................G AGTAATGCAGCACCAACAGCAGTAATCGCAG 10331 29 100.0 31 ............................. GATGACTTTCAGAAAGCTAACTTTAAAAATG 10391 29 100.0 31 ............................. TTGTCTGCACACTCTTCAAGAATCGATTGAA 10451 29 100.0 31 ............................. ACCTTTAAACAGGCTAAGCGCGTATTCTGGA 10511 29 96.6 31 ............................C CACTCACGAATAAACTGTTCTGGTTTCACAC 10571 29 96.6 31 ............................T AACTGCCAATCGAGGGATGTTTGAGATGGAT 10631 29 100.0 31 ............................. AGAAAGATGAATCATCATTTGATGTGAATGA 10691 29 96.6 31 ............................T AATTGATAGTGGTGGTCTACTTCATTTTGAG 10751 29 96.6 31 ............................C ATATGTTGCAGATGCCACAGCTTCTACGTAT 10811 29 96.6 31 ............................G CAAAGCTGTAGGATTCATAGTAATGACGCTC 10871 29 96.6 31 ............................T AAAACATAACTTTCATCATAGAAATTAAGGC 10931 29 100.0 31 ............................. CAAACTAAACGTTTACCACTTGCTGTTGTTG 10991 29 96.6 31 ............................T GAATATAGAAGCGGCATGCCTTGCTTCATTT 11051 29 96.6 31 ............................T AGTGCTGGGCAGACTTGGAATAGCCTATTTG 11111 29 96.6 31 ............................T TATCCCCGACTTTAAACTCACTCATGGCTGG 11171 29 100.0 31 ............................. ATGTTGCACTTGCAGCGATTAAGTCATCACG 11231 29 96.6 31 ............................T AGCCAGTGGTTGCCTGAGAGCAGGCATAAAA 11291 29 96.6 31 ............................T GAGTATGGCTCTTGCACAAATAGGCTATTCC 11351 29 100.0 31 ............................. CGTAAATCACTTAAAGAGCCACAACTTCAAA 11411 29 96.6 31 ............................C GAAGAAAAACCCAATGGAATCAAAGGCTTAA 11471 29 100.0 31 ............................. AAGCTAAATATACGAGTTCTTGTTAGCTTGT 11531 29 96.6 31 ............................T TCTGGAATTTCAATTTTTTCAACATGTTTTG 11591 29 96.6 31 ............................T GTTGTTAATGCTATTGAGAAACAGACTACTG 11651 29 96.6 31 ............................C AAATTACCGAGTGAAGTTTCAAGCATATAAT 11711 29 100.0 31 ............................. TTAGGATTCTTATGTAAATTCTGAAGGTGTG 11771 29 96.6 31 ............................T ACAGGCTGTGGCACTGGTTACGTTTCTGGCT 11831 29 100.0 31 ............................. TCACCTAAATATTAGGTAAAACCATGTTTAT 11891 29 100.0 31 ............................. AAATATTTCTAACCTGGACTTTAATTTTAAG 11951 29 100.0 31 ............................. ATTGACATAACTGCACGCAGCAAAGTCATTT 12011 29 96.6 31 ............................T GATTTAGCTTTATGACGATGAATAAACCACC 12071 29 100.0 31 ............................. ATGCCCAATCAAATACACATGAAATCCAGTT 12131 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 12191 29 100.0 31 ............................. GTCATCTGGTAAAGAAATTACGTATTCGAAC 12251 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 12311 29 96.6 31 ............................T AACTCTATTGTTGTTATCCCGACATCTATTA 12371 29 96.6 31 ............................T CTATTTTTCCATTCGGCACATGCTTTTTTTA 12431 29 100.0 31 ............................. TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 12491 29 100.0 32 ............................. ATTACCCCAATTACTGCTACAGCACCCCCAAT 12552 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 12612 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 12672 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 12732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATCAGTTTTAAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19286-12768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSJ010000017.1 Acinetobacter baumannii strain CCBH28083 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19285 30 93.3 30 ............................CA ACAGTTACACCTGACGGGGTAGGTTCTTAT 19225 30 96.7 30 ............................G. GAAAGATCGTATCAACTCAATGAATGGACG 19165 30 96.7 30 .............................A TACGTTGAACAACATGTTTCTGGACTTAAA 19105 30 96.7 30 .............................C CAAGCGTATACAAACCAGATCCATTTAAGG 19045 30 96.7 30 .............................C CAAGCGTATACAAACCAGATCCATTTAAGG 18985 30 93.3 31 ............................GG TGAATCATTTGTGCGAATAGATAAAGCGATC 18924 30 93.3 30 ............................TG ACATACAAACCCCTCAATAAAAGATGGGGC 18864 30 100.0 30 .............................. GAAATCAAGAAAGCGATGGGGTGACCAATG 18804 30 96.7 30 .............................C TGGCTTATTGAACGACTTGGCTTGGTGCAT 18744 30 93.3 30 ............................CA TTGTGATGACAGCACCAGTGTCTTTATCTA 18684 30 96.7 30 ............................G. TACCTGTAGTTGCAGAGTCCCCAAAAGAAC 18624 30 93.3 30 ............................TA TAAACTTAACGGGAAAATTAATATGAACAT 18564 30 100.0 30 .............................. CGACTGTGGTTTTCCAACTAGACTTAGCGT 18504 30 96.7 30 .............................A TGAACGTATTAAAAAACATATGGATAAAGC 18444 30 93.3 30 ............................TA GATGCCCTATTAGGGCATGGTGAAGCCAGC 18384 30 96.7 31 ............................G. ATTAATAATTGCTTCAGCAATATGGCTTGAT 18323 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 18263 30 96.7 30 .............................A CTAATCGGCAATCCTCTGTCAGCTTGATAA 18203 30 93.3 30 ............................TA AATACAATGGAACAGAGACTGTTAAGAATG 18143 30 100.0 30 .............................. TCATTGGTGGTGAGGATGAGGACCAATGGA 18083 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 18022 30 93.3 31 ............................TA TTTAAACCATTGCGTTAAAAACAATTCATAT 17961 30 93.3 30 ............................TG CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 17901 30 96.7 30 .............................C TAATTCAACAGGTACGGCATACGTTAATCC 17841 30 93.3 30 ............................TG ATGATGTTTGTTGGATTGCAACTGATGAAG 17781 30 93.3 30 ............................TA GTGAAGAAGTATCAAACATTGTTCAAGTAA 17721 30 93.3 31 ............................TG TTAGAGCCACACAGCAAGCTACGCAGAATGT 17660 30 96.7 30 ............................T. CTTCATCTTTAAATTTTCGCATTGCTGTGC 17600 30 96.7 30 ............................T. TTAGATCGTATTCGTCGTGAAAAATTACCA 17540 30 96.7 30 ............................T. TCACAAATGAAGTTCGTGCAGTTGAAGAAC 17480 30 93.3 30 ............................TC ACCTGACCACTTGGCTGAATGGTGCTTTAT 17420 30 93.3 30 ............................TG ATCGGTTGCACCTGAAGGATATTTACCAAG 17360 30 100.0 30 .............................. CTGAAACTGAGCCTCAGTCTTAAATGGAAC 17300 30 93.3 30 ............................CA TGAAGATTACACCCACATGATCATTCATCC 17240 30 93.3 30 ............................CA AAAAATTAATAACTATTAACCCGCTTCCTC 17180 30 93.3 30 ............................TC GCAAAATTAGTGAGAACAAGACTGTTTATC 17120 30 96.7 30 ............................T. GGGGTGACATACCCGCTAGACCATTTTTAC 17060 30 93.3 30 ............................TA ACGTGGTCAAGCCGCCGAAGATTCCTGAGA 17000 30 93.3 30 ............................TC TTACCGTTCCATCTCTTCCAATTGAGAATA 16940 30 93.3 30 ............................GA ATAAACATGACCAGCATCATAGCCATCAAC 16880 30 93.3 30 ............................GG CTTTGCAAAACCTCTTTTACAACGAGCTTT 16820 30 93.3 30 ............................CA GACATTACAGCCGCCCCAGTTGCTTCCACC 16760 30 100.0 30 .............................. TAAGGGGCGATGCTTTATTGATCCAGCCAC 16700 30 96.7 30 .............................C CGAAATGGTACCAAGTCTGAAAACCGCATA 16640 30 96.7 30 .............................A TGACAACTGATCCACCGTTTTGCCAAGTTT 16580 30 93.3 30 ............................TG TCCCTGCTGCAATCATTTCAAGAATCTTTT 16520 30 93.3 30 ............................TC TGAGATGTACGCTAAACAATTCACGAATGC 16460 30 93.3 30 ............................TG AATTTTACAAACTAAAGCTGGACGGAAAAT 16400 30 100.0 30 .............................. CGATCTTAGCACCAAAATCGTAATATGTAG 16340 30 96.7 30 ............................T. GAGCTCTCTCACAACTAAGCGAATTTAAAT 16280 30 96.7 30 ............................T. CTGGAAAGCCTATTATGGATAGGATTATCG 16220 30 96.7 30 ............................T. GAGCACGTTCACAGCTAAGCGAATTTAAAT 16160 30 96.7 30 ............................T. GTGATTGGCGCGAATCTATTAACAAAGAAC 16100 30 93.3 30 ............................TC TTGAAGTCGAGTATAGTTTTTAATCTTATG 16040 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 15980 30 100.0 30 .............................. AGAGTTTTCGAGAGTTCGATTAAGCACATA 15920 30 100.0 30 .............................. GTGAACGGCCAAGCATAATAATCAGGCCAT 15860 30 93.3 30 ............................TG TAAGTAATGGCGCACATCTTTTTTAGCTGA 15800 30 96.7 30 .............................A AGCCTGAATTGATTGAATCGACGATCTGAT 15740 30 96.7 30 .............................A CCATACCAAGCTGCAAACACAACCGCACAG 15680 30 96.7 30 .............................C ACCAGTTACAACGTAATTACCATCCAAGAA 15620 30 96.7 30 .............................C AAAAAGCTAAGTCTTTGGATGGGTGATGTT 15560 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 15500 30 100.0 30 .............................. GAAGCTAAGAAATGGGAACACCTGCAAGAT 15440 30 96.7 30 .............................C GTAAAAGGACTTTACGGTTTGGGTCAGCTT 15380 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 15320 30 96.7 30 .............................A CAACACCAATACCTCTGTTAAAATTTTCTT 15260 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 15200 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 15140 30 93.3 30 ............................TG TCACAGATTCATAGTGCTTTATAGCTAAAG 15080 30 96.7 30 ............................T. AAATTGTTTTGCATGAAGGTAGCTCGCATG 15020 30 96.7 30 ............................G. GAATATCTCCAACTGCATACAGCTTGCCTT 14960 30 96.7 30 .............................A AACCATCCACAGGGTAACCATTAGCAATAC 14900 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 14840 30 96.7 30 ............................T. CTGTTAGCTCTGCTGGATCATCAACGCCAT 14780 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 14720 30 100.0 30 .............................. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 14660 30 96.7 30 ............................T. TTGCAATCATGATCCGGACGATAAAAAAAT 14600 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 14540 30 100.0 30 .............................. GACGAACCTGTCTTACCTTCAGATCCTTCT 14480 30 100.0 30 .............................. ACACTCATCGCGATTCTATTAAAGTCTGTT 14420 30 96.7 30 ............................T. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 14360 30 96.7 30 .............................A AATGAGAAATTCATAACCATATACCCCGAG 14300 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 14240 30 93.3 30 ............................TA TGAGAAAGAAAAAAATTGCGACAAAGATAA 14180 30 93.3 30 ............................TA CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 14120 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 14060 30 93.3 30 ............................TA AAGATACGTTTTTAGCTTTTAATGTGATTT 14000 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 13940 30 100.0 30 .............................. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 13880 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 13819 30 100.0 30 .............................. GTCCATTTTGCGGATACGCAGATGGGTTAG 13759 30 96.7 30 ............................T. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 13699 30 96.7 31 .............................A ACTTAGATGACAAAGTATTAAAGCTCTGTGA 13638 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 13578 30 96.7 30 .............................A TGGATGGATATGGCATAGGCAAAGACGGCA 13518 30 100.0 30 .............................. AGAGAATCGGTACTGGATAACCTTGAGCGG 13458 30 100.0 30 .............................. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 13398 30 96.7 30 .............................A ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 13338 30 96.7 30 ............................T. GAGAATTATGAAAAAGCAGGCTTCTATGAA 13278 30 96.7 30 .............................A CAGACATACTTCTTTCATTTGCATCGCCAG 13218 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 13158 30 93.3 30 ............................TA CGTAATAAGTACACGGTGCAATCGGTGCGT 13098 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 13038 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 12977 30 96.7 30 .............................A CGTGAACAATTGTTTTAGCTTTGAACATTA 12917 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 12857 30 86.7 30 A.....AA.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 12797 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 109 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //