Array 1 496629-497436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQZG010000004.1 Pseudomonas aeruginosa strain DSM 50071 4_721732_20.5851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 496629 28 100.0 32 ............................ GCTAGTTCGTCAGCAAGAAGAGCGGCCCGCTA 496689 28 100.0 32 ............................ TTGCTGGCGCCGCCGGTGAGCTTCGCGTACTC 496749 28 100.0 32 ............................ AAATAAAGAGTGCCTTTCTTACTGCTGATCAA 496809 28 100.0 32 ............................ TGGTCGTCTCGCAATCCGCCTCGGCCGCTGGC 496869 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 496929 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 496989 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 497049 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 497109 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 497169 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 497229 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 497289 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 497349 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 497409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 33 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53090-54137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQZG010000008.1 Pseudomonas aeruginosa strain DSM 50071 8_244208_17.9929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53090 28 100.0 32 ............................ TTTGCCGGGTCACACTGCCCGGACCCGCCACC 53150 28 100.0 33 ............................ CAGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 53211 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 53271 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 53331 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 53391 28 100.0 32 ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 53451 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 53511 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 53571 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 53631 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 53691 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 53751 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 53811 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 53872 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 53932 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 53992 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 54051 27 92.9 32 .....................-..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 54110 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63590-62662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQZG010000008.1 Pseudomonas aeruginosa strain DSM 50071 8_244208_17.9929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63589 28 100.0 32 ............................ ACTGGGCTTCGCGGGAGAGGCTTCCAAAACTT 63529 28 100.0 32 ............................ ACCACGAACGAACAGTTTTTTCAGGTTTTTCA 63469 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGACAAGTAATG 63409 28 100.0 32 ............................ GGCCAGTCCGTGCCGATTCCGCCGGCGTGGAG 63349 28 100.0 32 ............................ TGGACCTGGCAAAGCTGGAGTGGGCGCGGCTG 63289 28 100.0 32 ............................ TGGACGGCAAACAAGATCGTAGGGCGCTGCCC 63229 28 100.0 32 ............................ TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 63169 28 100.0 32 ............................ ACTGACGACCGTCACGCTGACCCGACCGGAGA 63109 28 100.0 32 ............................ ATGTCCCGACCGTCGCAGGCCGTCAGCGCGTT 63049 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 62989 28 100.0 32 ............................ AGGTCAACGACCAGCGTCGGAGCCTCGGGCTT 62929 28 100.0 32 ............................ TGGGACACCCGACGCTGCGAGACGCTTGCATA 62869 28 100.0 32 ............................ ATCGCCGGCATGAACGAGGCGCATGCGAAGTT 62809 28 100.0 32 ............................ TGGCCGTAACCCGTGGTCAGGCTGAGCGGCAC 62749 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 62689 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGAGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCTCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //