Array 1 83853-85127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEQ010000006.1 Enterococcus sp. BWR-S5 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 83853 30 100.0 35 .............................. TTGATCAATTTTGGTACAATCACGAAAGAAAAAAC 83918 30 100.0 35 .............................. TTGATCAATTTTGGTACAATCACGAAAGAAAAAAC 83983 30 100.0 37 .............................. TGGAAAATGGTGGACGAATCAACAGGAGAAATCCGTG 84050 30 100.0 36 .............................. TCAATCAATACATTGGCAAAAATCTGTGTAGCACTC 84116 30 100.0 36 .............................. TCCATTTATAAACCAGCAGCAATAAGCCTAGGTCAG 84182 30 100.0 35 .............................. GTAGTAGTTACCGCTACCCTTTTGCGCTAATCCAA 84247 30 100.0 35 .............................. ATTTCTATGTCTTCAAATGTTTTTTGTTCAGTATC 84312 30 100.0 36 .............................. TCTTCTTTCCATGAAGGAAAATTGAGAGTCACGCAA 84378 30 100.0 36 .............................. TCACTTTTCCGGATTGCGTTACATACATTTCATCTA 84444 30 100.0 34 .............................. AAATATGTGTTGCACTTGGTCTTTCGGTCATAGA 84508 30 96.7 36 ................G............. GTATATTACGCTTAAGTATACCTGTATACGGGTATA 84574 30 96.7 36 ................G............. ACCAGTTCAGCCATGCTTTCAATAAAATCATATCCT 84640 30 100.0 36 .............................. TAATATGACCAATAACCGTTCTCGTGATCGATAATC 84706 30 86.7 36 .G.............G.C........A... CCCTTCGCCCCACGTATGATGTCGCTTTGCCATTGA 84772 29 86.7 36 .....-.........G.A........A... TTGTTTATCATCACGACATCATCCACTAACCGAATT 84837 30 90.0 34 .................AC.......A... GACTGAAACTTATTCACATCAATCCAAATCTCAT 84901 30 86.7 36 ............T..G.C........A... TATTGATGTCGCTCTCAAGTTCAGAGAATAAACCCG 84967 30 90.0 36 ...............G.C........A... CGATAACGTTTAGTTTTAAACGTAAGTTCCACAGTA 85033 30 93.3 35 ...............G.C............ GAATTTGAAGTATTTGAAGTAGCAACAGAAAAAGC 85098 30 93.3 0 ...............A..........A... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 96.0 36 GTTTTAATCTAAACACAGTGTAATGTGAAT # Left flank : AATTGATCGCTACATGAACCATGGAGAGGCACAGGAGAAGTTGAGCCAAGCAGAGGATAAGGAATTGCCTAAGGGCTTATCAAAGCTGACCTTGAAAAAGGTCAGTGAAGGACTTCAAGCCTTAGAGGAGCCGTTCTCGACAAAAGATTTGGCAACGAAAATCAGCTTATCAAGAATTTCTACAAAAAAATATTTGCAGTTTTTAGTAGACAGTCAAGCGCTAAAGGAAACAATGATATACTTGGAAGTCGGACGACCATTGACGAAGTATGAAACACAAGCAGATTTTACCGAAAGAATTGAGGAATACCTATAATTGAAAATCTGTCGACCTCCGATAGTGCGGAAATTGAGGAGGATTGACAGACACGAAGAATCCTATCGTTATTGACTTATTGTATTCCTATCTCGTAAAATGGAGAATATAAGCAAGAAGAAACAGGAGACCGACAGAAAGAGCTCCTGAAACCCTTGGTATATAAGGGCTGAAATTAGGCGGG # Right flank : TCCGAATGATTTTGATAATGCTTCTTTGATTTTTCTGGTTTTAACCTAACCACGATGTAACCCACCCACCACATTCCAAAAACGTCCAAAAAATCTAATTCGCTGGACGTTTCTTTTTTTGTCTCTTTCTCTTTCCCTTCTAAACGATTGAAAAGGACAAATCTATACTTTTTTAGTATGATTGAGTGGAAAAGGAGGGAACACGATGGACAAAGCCCAAAAGTATATTCCTGAGCTGTCTTCAGAGCTAAGACAGAGTATTATCAAGATGCCGAAAGCTATTCGTGAAGCGAGTGGAATTAGTATTTATGGCAAACGAATCAAGAGTATCATTTACACGATGGATGTGGCAGTAATTGCCAACAATGATGCTGATGCGATTTTGGCTGTTTATCCTTGGACACCGAATACGCGAATTTTATCAGCTGTTTCTCAGGTTTCTCAAGCACCAATATTTGCAGGGATTGGTGGAGGATTGACCTCGGGGAATCGTTCTGCTC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAAACACAGTGTAATGTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 113469-114200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEQ010000006.1 Enterococcus sp. BWR-S5 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 113469 30 100.0 37 .............................. TCAAAAAGTTGTGGACTCATTCTTCTTGCAGTTTCAA 113536 30 100.0 36 .............................. ATCATGGACACCATCAACGCAGAAATAAACGAAAGC 113602 30 100.0 36 .............................. ATCATGGACACCATCAACGCAGAAATAAACGAAAGC 113668 30 100.0 35 .............................. AGATAAGATTCAGTAGTTTCATATGCTGGCGTAGC 113733 30 100.0 36 .............................. CTGTAGAGCCGCAGCCCATATTCTTTGAAAGGTTTC 113799 30 100.0 36 .............................. CATGTTGCGAAAATGGTCACAGCTCAAACATTGCAG 113865 30 93.3 36 ...............CG............. ACTGTAATGAATGAACAATTTGATGATTTTGAATTG 113931 30 96.7 36 .................C............ GTCGTCGTTGTTTCATTGCTCCATGCAGCATTAACA 113997 30 100.0 36 .............................. TTAGGTCAAATGATGATTACTCTTGGCTTGGATACT 114063 30 96.7 35 ...............T.............. TTTGATAGTGTATGTATATTTAGTATTTTTTACCC 114128 30 83.3 13 ...............A.C......TG.C.. CGTTTCCATAATC Deletion [114171] 114171 30 73.3 0 ............TT.A...A..T.AA.C.. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 95.3 34 GTTTTAATCTAAACAGAGTGTAATGTAAAT # Left flank : GCAATTGGCGCTCGAAAGGAAATTCAGCTGAGTGACCGGAAGTGGTTTCGTCCGCTGATAAAACGAAGGTACTCTTTCCCGTTTGGTTTAAATGCTGCAGCACGCGCTCAATGATTTCTTCATCTGATTCATTAGGTCGGTTACTGACATTGCGATAATCCTTGATAAAAGCATCCTGTTGTCTAATTACATTTTCCAGCATGGTTGTATTCCTCCTCTTGATTGGTGTTCTTTATGGCAGTTATTAAAATCATGTCATGAATATCGTAACGCAAATGTAAAAGAGTGTCTAAAAATTGGTTTAGGAATGTATCAAGGAAAGAATCTGTTGACCGCCAATAACGTAAAAAATAGAGGAGACCGACAGACGACAAAAAGCCTGCTGTTATTGACTTTCATGCCGCGAGTTAGGTAAAATGAAAGATGTAGCGAAGTGAAAATAGGTGGTCGACAGAAATGACCACTGGAACCCTTGGTACATAAGGGCTGAAAATGAGTGG # Right flank : TAATAAATCTAACCAATATAAATCAAGCCATGAAAGGATGAACACACATGTCTCAACAGTCACGAATGTTTTATATCATGAATTACCTGAGTGTTCATCAAGAGACGACTGCCCTTTTTTAGCTGAAAAGCTGGAGGTGTCGGTACGGACGATTTATCGAGATTTAGATAATCTTTCAGGCTTAGGATTTCCTGTCTATGCTCAGAATGGTCGAAACGGCGGCATTCGGTTACTGGAAAATCATCAAATACCGGCTACTTTTGTCACTGAAGAGGAACAAGAGGCTATTTTATCTGGTTTGGAAAATCTGGCAGTCACTGAATTTGTCGGTGCAGATGAGCTATCGGTAAAGCTGTCTTCTTTGTTTAAGCGCCCAACTGATTCTTGGTTGGCTATCGACTATTCGGGCTGGCGCAAGTCGGAGGAGAAAGAATACATTGACCTGTTAACGACTGCGAGAAAGCAAAAAAGCTGTGTGTTTCTAACCTATGAAAATAGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAAACAGAGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //