Array 1 3119302-3122681 **** Predicted by CRISPRDetect 2.4 *** >NC_016147.2 Pseudoxanthomonas spadix BD-a59, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3119302 31 100.0 35 ............................... ACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCAC 3119368 31 100.0 34 ............................... ACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCG 3119433 31 100.0 35 ............................... ATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAA 3119499 31 100.0 35 ............................... TCATACGGCAACAGGCTGGGGATGTAGCGGCCATG 3119565 31 100.0 34 ............................... ACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACT 3119630 31 100.0 36 ............................... GGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCG 3119697 31 100.0 36 ............................... CTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGC 3119764 31 100.0 34 ............................... CCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGG 3119829 31 100.0 36 ............................... TGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGC 3119896 31 100.0 34 ............................... TGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCC 3119961 31 100.0 35 ............................... ATACTATGCCCGATTCCCCGCGCAGATTGTGCGTG 3120027 31 100.0 35 ............................... TTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTG 3120093 31 100.0 35 ............................... GCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGC 3120159 31 100.0 34 ............................... ACCTTTCCAGCCGTCGGCCAGTACGACATCCGCG 3120224 31 100.0 34 ............................... GCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCG 3120289 31 100.0 34 ............................... GCATTCAGCACGGCGGCTGCGACCCAGCAGGCCA 3120354 31 100.0 36 ............................... ACGACGCTCTCGGTCACCTTTGACGTGGACGGCGAC 3120421 31 100.0 36 ............................... CGACAAGCAGCCGAAGCACGACTACACGCAGCGAAA 3120488 31 100.0 35 ............................... TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGC 3120554 31 100.0 34 ............................... TCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGC 3120619 31 100.0 34 ............................... TCGCCGATCTGGGTCGATGGCCAGCGGCATCCGC 3120684 31 100.0 33 ............................... GCGTCCAGGTCGTAGAACCGCACGCCAGCCTGC 3120748 31 100.0 34 ............................... TTCCACGGGTAGGTGATCGGCCCCAGGATGTCGT 3120813 31 100.0 35 ............................... ATCGTCGGCTACCGGGGCATGATCGACCTTGCGCG 3120879 31 100.0 36 ............................... TCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCC 3120946 31 100.0 33 ............................... GTGATCTTCTGACCGGTCTCGAACGGCGGCCAG 3121010 31 100.0 33 ............................... CTGCAACGGCCAGGACGTAGCTTGCATCCACCG 3121074 31 100.0 35 ............................... TACGACGATGCAGCGGCATCTGACATCACAGAGGG 3121140 31 100.0 35 ............................... TTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAG 3121206 31 100.0 37 ............................... AATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAG 3121274 31 100.0 34 ............................... CGCTTCGTCGGCACGACGATGGCGTTCGAGGACC 3121339 31 100.0 35 ............................... CACGCTCGTTACACGGCCGTCCAGTGCCTGGACAA 3121405 31 96.8 35 ............................G.. ATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCG 3121471 31 100.0 33 ............................... GGTTCCTGGCCCGCCGGCCAAGCGAGTTGCCGT 3121535 31 100.0 35 ............................... TTCGGTTGATCGAAGGCGGGCGAGGGTGGGGCGGT 3121601 31 100.0 36 ............................... GCCAGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTG 3121668 31 100.0 34 ............................... ATCCCATTGCCCTCATGTCACGCCTCCACCGCAT 3121733 31 100.0 34 ............................... AGGTGCGGTTTGAGGTCGACGGCGACGGCAACGT 3121798 31 100.0 34 ............................... TGCCAGCAGGCCGGGATCAGCCCTCGCCCCACAG 3121863 31 100.0 34 ............................... ACCGCCGGCGGCCACGTGCTGCTGATCGGATCCA 3121928 31 100.0 34 ............................... GTCCTGCCCAAGGCCTCGGCCACGGTCATCGCCG 3121993 31 100.0 35 ............................... CGCACGCGCGGCACCTCCGCGCACCAGCAGAACAT 3122059 31 100.0 33 ............................... AAGCGCAGCGTGTTCGACGACATCTGCGCTTTC 3122123 31 96.8 36 ...C........................... AGTGGCGTATTGACTGCAACATGCGTGCCGATGCAA 3122190 31 100.0 34 ............................... ATCGTGTGAACCTCGGCCGACTTGTACGCACCAA 3122255 31 100.0 36 ............................... TACAACTGGCGCTGTGCGATGCATCGTGACGGTCAG 3122322 31 100.0 34 ............................... CTGCACAGCGCTTTGGAAGGTGACTTTGTGGACT 3122387 31 100.0 36 ............................... CAACGCGAGAATAGGTTCTCGGGCCGGCCCGTAAAC 3122454 31 100.0 34 ............................... TCATCAGATGCTCCGGGAGTTTTGGTGTCTGGGA 3122519 31 96.8 36 .....................T......... CATGCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGC 3122586 31 100.0 34 ............................... TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAG 3122651 31 80.6 0 .....................C.C...CCCT | ========== ====== ====== ====== =============================== ===================================== ================== 52 31 99.4 35 GTCGCGCTCTCACGAGCGCGTGGATTGAAAC # Left flank : CCGTTCCTGTGGCAATGACGCGGAGCCATGCGCGATGATGGTCTTGGTCAGCTATGACGTGAGCACAATCGCCCCCGGCGGAGAAAAGCGACTGCGCCGGGTCGCCAAGGCCTGCCGCGACGTGGGTCAGCGGGTACAGTATTCGGTCTTTGAGATCGAGGTCGAACCTGCGCAGTGGGTCCAGCTGAGGCAGCGACTGTGTGACCTGATCGACCCTGAGTGCGACAGCCTGCGCTTTTATCAGCTGGGCGCGAAGTGGGAGGGCCGCGTTGAACACATCGGCGCCAAGCCCAGCGTGAACTTCAAGGGTCCACTTATCTTCTGATGCGAACCCCAAGCAACCGGAAACAACCGGGCCGGTTCGCGCGCAGCTAAGTCATTGATCCGCATGGATGGGACCCCTGTGGTGGCCCCTGCAACCGATCGAGATGCGCATCCGTCAACTCGGTTCGCATTGTTGAGTCTTTTCCCCTGTCCAGCCAAGCATTTATGCTGAGGGA # Right flank : TGGTAGAGCCTGTCGCCGATCGCCCCCCCCCCCCCCGGAGCAGCTCACTCACGCCGCCGGCGCGAGCGCCTGCAGCGTGGCCATGTCCCAGCGCGGGGTGACCTTGACCTGGGCGTCGTCGTGCTGGCCGGCTTGCAGGCGCAGGGCGCCGGCGAAGGCGATCATCGCGCCGTTGTCGGTGCACAGCGCCGGGCGCGGGAAGCACACCCGGCCGCCGTGGCGCGCGGCCGATTCGTGCAGCCTGGCGCGCAGGCGCTGGTTGGCACCGACGCCGCCGGCCACCACCAGCACCTTGCTGCCGGCCGCCTCCAGCGCGCGCTGGCACTTGATCACCAGGGTGTCCACCACCGCATCCTCGAAGCCACGGGCGATGTCGCGGCGGGTCGCATCGGACTGGTCGCTGTCGCGCCAGGCCAGCAGCACCTGGGTCTTGAGCCCGGAAAAGCTGAAATCCAGCCCCGGCCGGTCGGTCATGGGGCGGGCGAACCTGTACCGGCCCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTCACGAGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //