Array 1 3744-2514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTL010000025.1 Serratia sp. ASV30 NODE_25_length_71926_cov_10.090558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3743 28 100.0 33 ............................ CAGAATGCCGACTCGTCACCTATGAATAGGCTG 3682 28 100.0 32 ............................ TGAGAGCTTACGTTGCTTAGCTGAAAATGGTC 3622 28 100.0 32 ............................ AATATGAAGAATCGATGGTTCAGCCGTATTTA 3562 28 100.0 32 ............................ AACGAAAGCAAGTTTATTGCCAGGATCACGAA 3502 28 100.0 32 ............................ AGTAATGCTTTAGCGGCTGCAAGTAGGGCATT 3442 28 100.0 32 ............................ TAAAACAGGCCGCTGGCGTCAAGTGGTTATCG 3382 28 100.0 33 ............................ ATGATTACACCTTAAATTTTCGTAATACTTTAG 3321 28 100.0 32 ............................ TTCAAAGATTTTAATAAGCTGCAAAGCTGCTT 3261 28 100.0 32 ............................ TCACCCGATCCAGCGATTGTCCTGTGTTGCTA 3201 28 100.0 32 ............................ TCTGTACGCCCTTGTTTTTCCAGGGCATCAAT 3141 28 100.0 32 ............................ GTTAGATAGGTTAGCTTGTACGGAGTCGCTAC 3081 28 100.0 32 ............................ AATCCAAGCGTCGTTGAATGAGTTGTTGATAT 3021 28 100.0 32 ............................ GTTTGCAGCGCTTCACGCTCTAATCGTTCTAT 2961 28 100.0 32 ............................ AGTGGAGGAACTCACCCCGGCGATCCTGAAGC 2901 28 100.0 32 ............................ TCTGCCACGTTCTCCTCTGCCTTCTGGTTTAG 2841 28 100.0 32 ............................ TGCATGTTCATGCTTATGCTGCTAACGACGAT 2781 28 100.0 32 ............................ TAATGGCAACCGTATTTACCGAACTCAAACCA 2721 28 100.0 32 ............................ CGGATAATCATAATAGCGATAATCGAAAGCCT 2661 28 96.4 32 .............G.............. ATTTCGTAGCCGAGTTTGTCAATGCAGCGCAG 2601 28 96.4 32 ...........................G GGTTTACCCCTGAGAAAGTTAGAGCGGCTTTC 2541 28 75.0 0 .C.....A...C.C...T......A.C. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACTGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAGTTCTGCCGATACCCGCTAATGCAAAATATCGTACAGTGCGACGAGTGCAGCTCAAAAGCAGCGCCGAGAGATTACGTCGTCGCTCTGTTCGCAAGGGATGGGTAACTGAAGAAGAGGCTCGTCTGCGTATTCCTGATGCCGTTGAGAAACGCTCAGCATTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACAGAGGGGGCATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGACTGATTCTAACCTATTGATTTTAAAGGTTGGGGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTGGGGTGGCGGGATTCTATTTTATTAACAGTTAGTTACCGTTAGCATGTAACA # Right flank : TTAATCTGGAGAGGGAGGCGCGTTGAAGGTCTCAATCTTCGCGTTTACGGAAATAATGTCCACAGTGGGGGCAGATCAGTGTGACGTTTTTTTTCACCTTGCTGCGATTTTGCGGCGAACTTTTTGCGCATTCAGGGCAGGTGACATCAACGGGGGCGTCACCGAATAGCTTAAAAGCATCAAAGAAAGACATCTTTTTCACCGGGTAGAGGTAGGAGGAGTTCAGTGTACCTTTATCGCTCGATGATAGCTCCACATAGATTGGTAAACCACTGGTAGAGACGTAGCTAGCTGCGCGCTAAAAAGGGAGTAACAAGTGGGGAGAAGGGGCGAGGGGGAAGAAAAAAGCCCCGCAAAAAATGAGGGGCAAACACAACAACACCAGGGAAATCGTTGATAACTAATCTGCTATTACTATATGTTTTTTGAGACGAGAGTTCATCAATAAATTGCTGCATTATTGCAACATTATAGTTAATTAATTTGTATGCATTTGGCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12990-12242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELTL010000025.1 Serratia sp. ASV30 NODE_25_length_71926_cov_10.090558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12989 28 100.0 32 ............................ AACGGGAACCGCAGCGTAAAAACCAGGCCACC 12929 28 100.0 32 ............................ GAGCAGCTGCTAGCACAAGCATGGCACCACCA 12869 28 100.0 32 ............................ TGGCGCAGGCTGTAAGCCGCAGAAGCCCCCGG 12809 28 100.0 32 ............................ ATCATCCGGCCAATCATCCCGGAAGTGGTGCC 12749 28 100.0 32 ............................ GGCATGTGAAACATTTTTTCATAGCCTTTAGC 12689 28 100.0 32 ............................ TATTTATGGAGCGGGCAACGCCGGAGGAACAG 12629 28 100.0 32 ............................ GCACAGGAATTTCGCGCAATAACGACGTAACG 12569 28 100.0 32 ............................ AGTATCCAGGCACCGATTTGGACATTGAGGCA 12509 28 100.0 32 ............................ GTTAACGCTGCCGGTTCCATGGTGACGGATCA 12449 28 100.0 32 ............................ AGACACCGCGAAGTAGTTGGGCCATCCGAGGT 12389 28 100.0 32 ............................ TGAAGCAGCTCCACCGATGCCACCAGACAGTC 12329 28 100.0 32 ............................ ACCAGGCCGGTGACTCAAGTCGGCCCATACTG 12269 28 92.9 0 .......................G...G | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCGCCGCAAACCAGCGCCAAGAGCCTGGAGTTCGACTCGTCTTTTTTGAATGTTGATGACGTACAGTCGATCTATCTCAGCCGTTTCGCCGAAGGTGCCTCCAGGTTGCCCGGAATTTACAAAACCGCGCTGTATGTTAACGGTCAACTGATCCGTAATACCGATATTGAATTCAAGTCTTGGGCCGATAAGTCGGTCTATCCCTGCCTGACCAGCGACATTATTAAAAAATATTGCGTTCAACTTTTCTCCGCTGAAACTCTTCCGCACGGTGGTATAAAAAACGAGCCACATTCACCCTTGGTAGCTCTGTAATCATCATCTGAAGCTGTATCTATCCATGAGACTGGTAGTATGTGTCGTTCTAGACCCTAATTTTGGGGTGGTTATTAACTAATTGATTTTAAAATAAATTAATGGCGTGAGTGAAAAAGGGTTTTCCAGAGGATTTCAAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : GTTGACGCACCGCCAACTTTCACCCCAAGATTGTTTTTATTATTAAGCTAACTGATATAAATGATTCATGATTTGTATCTATCTCTATGATTCATCATCAATATAAATTAAATGAAAATCTAACATCAATCACTCTATACAGTGAGCCTATTATGTTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTCTTGGATGATTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCTTCTGATCTAAAAACCATCCTGCATTCAAAGCGTGCGAATCTTTACTACCTGCAGCATTGTCGGATCCTAGTCAACGGCGGCAGGGTGGAATACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTCTGTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //