Array 1 965966-967213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017972.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1904 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 965966 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 966027 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 966088 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 966149 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 966210 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 966271 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 966332 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 966393 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 966454 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 966515 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 966576 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 966637 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 966698 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 966759 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 966820 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 966881 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 966942 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 967003 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 967064 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 967125 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 967186 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 983976-986018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017972.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1904 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 983976 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 984037 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 984098 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 984159 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 984220 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 984281 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 984342 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 984403 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 984464 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 984525 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 984586 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 984647 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 984708 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 984769 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 984830 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 984891 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 984952 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 985013 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 985074 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 985135 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 985196 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 985257 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 985318 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 985379 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 985440 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 985501 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 985562 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 985623 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 985684 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 985745 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 985806 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 985867 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 985928 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 985989 29 96.6 0 ............T................ | A [986016] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //