Array 1 25860-24702 **** Predicted by CRISPRDetect 2.4 *** >NZ_OABW01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate R769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25859 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25793 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25727 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25661 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25595 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25529 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25463 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25397 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25331 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25265 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25199 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25133 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25067 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 25001 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24935 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24869 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24803 36 100.0 30 .................................... TATTGTGAGATTTACCCGCAAATCTCATTT 24737 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //