Array 1 1927349-1926528 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023438.1 Micromonospora sagamiensis strain JCM 3310 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1927348 28 100.0 33 ............................ CCTTGTGCACGGTGGTGACCTGGGCGGGACGGT 1927287 28 100.0 33 ............................ GCGGTCGGACGCCGGCGGGCACCGGGATTCCTG 1927226 28 100.0 33 ............................ CTCCGCGCCGTTGTCAGACAGGGAATCGAACGT 1927165 28 100.0 33 ............................ GTGGTACGGGCCGATGCTCCAGGTCGCGGAGAC 1927104 28 100.0 33 ............................ GCGGGAGTTGGAGTCGAATCCCCTGCTGGCCGC 1927043 28 100.0 33 ............................ GCTGCGGGGCGGCATCCAGCGTGGCGAGTTCCC 1926982 28 100.0 33 ............................ CGGGTCGTCATCGTGGTCGCACACCACCAGGGA 1926921 28 100.0 33 ............................ GCGCCGCACCCTCCTGAGACTCGGCGAGAGCCT 1926860 28 100.0 33 ............................ CCACCACCGTGGCCGGCTCGTCCCCGGCGCTGA 1926799 28 96.4 33 ........T................... CCACCACCGTGGCCGGCTCGTCCCCGGCGCTGA 1926738 28 96.4 33 ........T................... CCGAGACGCCGGAGCGCTTGCGGCAGAGGCCTC 1926677 28 96.4 33 ...............T............ GCGGAACGGAAGTGGCAGGCGGAAGTAGCTCGC 1926616 28 100.0 33 ............................ AATCCGACAGGAACCACGCCGAGTCCCGGCGCA 1926555 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCGGCTCTGGGACGCAGACGGGCCGGAACTCGTCGGCGGGCGCAACTACGGCAGCGAGCTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAGGGGCTTCGAGGGCATCTGACGCAGTGGCTGTTGGAGATTTCCGCAGGGGTCTACGTGGGACACGTCAACAGCCGGATCCGGCAGCGGCTCTGGGGCAAGGTGATCGAGATGGCCGGGCCCGGTCGGGCCCTGCTCGTCTACCAGGCCCCCGGCGAGCAGCGGCTTTCCTTCAGCGTGCACGACCACCACTGGAAGCCGGTGGACCTCGACGGTGTCACGCTGATCCGCCGCCCCACCGAACGGAAGACGTTCAACCCAGCCCTGCCGAGAGGCTGGAGCAAGGCGTCGAAACGCCGCCGGTTCGGCCGGAGGTCACCGGACTCTGGCGTACCAGCGGCTCCGAATCAAAGTGAACAAAAAACCGAGAGTTGATCTTCGGAGCCGCAGGTCAGGAAGC # Right flank : CGTGGGGCCGTTCGTAGTTCCGGACCAAGAGCAACTCCGGTTGGCCCTGCCTGGATGACGTCAACGAGGTCGCCGAGCGGCACGGGGACACCTGGCAGCTGATGGTTGGCGGGTACTGGCTGCGCATCGGCCTGGATGCCGGGAACCATAGCTGGGACGAGATGTTAGCCGCCGTGGGACCGGTCACCAGCAGCACCGTCCAGCGAACCGCTCTGGTCGCGACGGTGGAACACGTGACGGTAGAGCAGCCGTTCCTCTCCAGAGCCCTCGCTGCCTCGAACCCGCCGGCCGCCGGCCCGATCCTGGAACTGCTCCCGCCCGGCGGCGGTCCGCTGCTGCGTACCGGCGAGCAGCGGACCCCGCTGGCCACCGTCCATCCGGACGGGCGGGTGGAGTTGCGCGGGCGACGGGGTGGCCCGTGTACGTGCTGGACGAGGGGAGCCAGTGCAACGACGAAGCCTGCCCCTGAGAAGAAATCGAAGGCGGGACGATCTGGATGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 1943625-1944324 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023438.1 Micromonospora sagamiensis strain JCM 3310 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1943625 28 100.0 33 ............................ AACCCGCATCTCGCCTGGAACCCGTGAGCGATA 1943686 28 100.0 34 ............................ CTCGACTACCACTTGATGCTGTCCGACCCGACCC 1943748 28 100.0 33 ............................ CGTCGTCGTGCTCGCGCAGACGGTTGAGGACTT 1943809 28 100.0 33 ............................ GGAGAGCGTGACCGTGACCGACACCGTGATCGA 1943870 28 100.0 33 ............................ CCAACTCTGGGTCACCTCGCCGGACAGGACGTT 1943931 28 100.0 33 ............................ GGCGTACCTGGGTGGGACGTGGCGGGAGGTCTA 1943992 28 100.0 33 ............................ CCCGACCGGCCTGTTCTTCCACCCGATCGCCGA 1944053 28 100.0 33 ............................ GCCGCCGGCCACACCCACGGGCGGTGGGGCGGC 1944114 28 100.0 33 ............................ CGCCCACGACCCGATCGGCGCGTGCGGGTGGTC 1944175 28 100.0 33 ............................ CGCGAGGGCCCTATCCCCCTCGGCACGCTCGGC 1944236 28 100.0 33 ............................ CTTGTTGATCACGTACAGGTCGAAACCCGTGAT 1944297 28 92.9 0 ............T...........G... | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCATCAGTCCCCACCGCCCGAACCCGGTGAGTTCAGCCCGCGGAAGGATCCGTCTCGACGATTTCGGCAAACGCCTCGGATGCCTTCTTCCAGCCGTGGACCTGATGGGCCCCGGCTTGTTGACCTCGTCATCCACCATCCCCAGACGCCGCAGGTCCAAGATGGTCGCCACCCTCGGGAAGCGCCCGAGCCGGACGTACCGATGGGCTCGATCGACGCGCAGGGTCAGACTCAGGCCCCCGTTGCTGCCTCGCCTCGCCCCGAGCGGGTGCAGGCAGGCGAAAACCGCCGCAGCTACGACGACGACACCGCTGGCGAGCGCGCCCGGCCTATCAGCGGTACAAGAACCGGGAGACGTAGCGGCCCACCCTCAACTTGACAACTAACGTCGGGTGCGCTGTGTTCGACGTGAGCCCGTCACCTTGCCCCGGTGGAGCGTCATGCCAACCAAAGTGAAGAAAATTGGCCTAGTTGATCTTTAGCGCACCAGGTCAGGAAGC # Right flank : CTTTGCGTCGTAGCGTCTTGCATCGTCTTGTCGCCTGTCCCCCACGTACGACCCGACCGAGTAGTGCCCTGCATCAACGGCTGATCGACGGCGAGACCGGGGCAGCTGACGGCGGGGTATCAGGACGCCGCGTCAGCAGTTCGGGGCGCGCCAGAACTGGCTGGACTTGTTGCCGACGTGGACGTGGTCGTCGTGGTCGGGGTAACCCGGCCCCAGGATCTCCTTGAAACCGCAGTACCGGGCCATCCGCCACATCTCGCAGAGACTTGGTCCGCTCGACGTGCCCAGGTCGGCGGCCTTGCCGTACGTGTGCAGGCTGCCGGACGCTCCGCCGACCTTGCTGTTGCAGGAGATGCTCCGGAATCCGGAGGAGATGACGATCGGCCGGTCGCCGAGCTTGTGCCGCAACGCCTCCAGTTGCCACATGACCCGCAACAGGTTCTCCCGCACGGTGGCGGCGTCGACCGCACCACCGGAAAAGCCGGCCTGGCCACAACCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4975871-4974137 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023438.1 Micromonospora sagamiensis strain JCM 3310 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4975870 28 100.0 33 ............................ TTGTCACGTCGTGTTTTTGGGACAAGGAAAGGC 4975809 28 100.0 33 ............................ CACGCCCGCCGCACTGGACTTCCGTTCCGGGCT 4975748 28 100.0 33 ............................ CGACGTACACGCCGGCCATGCTCCGTTCGACGT 4975687 28 100.0 33 ............................ CGGTCGGTGCCCCTGGCCCCGGTCCCACGTAAG 4975626 28 100.0 33 ............................ TCCCTCGCCCAGCATCAGGTGACCCAGACCCAC 4975565 28 100.0 33 ............................ CTCGCGGCACTTCTCCCGCACCGCAGGCCAGCC 4975504 28 100.0 33 ............................ CTACCAGCGCGGGACGGCGTGGATCGTGAGCAG 4975443 28 100.0 33 ............................ CGGGTCGTCGGTGTCCACCTCCACCGGGCCGTC 4975382 28 100.0 33 ............................ GTTGCTCCGGGCGGCGTCCGACTTGACCACAAT 4975321 28 100.0 33 ............................ GTCCGCCGGGCTGACCCGGCAGACCCTCAACGA 4975260 28 100.0 33 ............................ CGAGCGACGACGACGTAGGGGAGATCAAGAGAT 4975199 28 100.0 33 ............................ TCCATGACGGCGCGTGTCGAGTTCGACAACATT 4975138 28 100.0 33 ............................ GAACTCCGCGCCAAGGCGGCCCGCGTCGCTGCC 4975077 28 100.0 33 ............................ GATCAGGTACGAGGAAGAGGTGAAGGACGGGCC 4975016 28 100.0 33 ............................ CTGCAACGGGCCCTGGACGCGATCAACGCTCGC 4974955 28 100.0 33 ............................ GGGCACCGCCGCGGCGATCGAGGAGTACGGCTA 4974894 28 100.0 33 ............................ CCCGGAATTCATCGCCGGGGACTTCGTCGTGGC 4974833 28 100.0 33 ............................ CGTGTCGCGTCGTGCCTCGCTTGCCGCTCCGGC 4974772 28 100.0 33 ............................ CGACCATTGCCGTTGCGATGAAGGAGTACGCGG 4974711 28 100.0 33 ............................ GTAGCGCATCGGCAGACCGGTCACCCCGGCGAC 4974650 28 100.0 32 ............................ AGCAGCACGACCAGAGGAGTACGGCATGAAGT 4974590 28 100.0 33 ............................ CTGGCGACGCTGGCGGACCTCGCCGCTCACCTC 4974529 28 100.0 33 ............................ ACCTCACCGATGCAGGCATTCAGCTAGTGGTGG 4974468 28 100.0 33 ............................ CCGGCGGCACATCCAGGCACGGCTGAGCCAGTT 4974407 28 100.0 33 ............................ CCCGGCGACCGCCGTCCCGCACGCGCAGACCGC 4974346 28 96.4 33 .....................A...... GGCCAAGATCACCCGCGAAACGTGGGACCAGGG 4974285 28 96.4 34 .......................A.... CCGGCCACGAGGACTTCATGCTGTCGTTCGCCTG 4974223 26 85.7 33 .............--.......C....T CGCCGGCCCGGTTGCTCTGGCCTACCGCAGGGT 4974164 28 89.3 0 .....T..T...............T... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGAGGCACTCCGCTGCTGACGAGAGGACCTCCGCCACGAGCAACTTAGGACCCTAAGTCACCAGAGTCAACACAGGGTTCACACCGTGTCGCGCTTGGTGAGAGTCTGGACAGGCTGACGAGAGGTGGTCCACATGCCCCGCAAGCCTGTGTACGAGCAGGTCTTCGACGACATCACCGCGTCGATCCGCAGCGGCACGCTCAAGCCCGGCGACAAGTTGCCGACCATCGCCGAACTCGCCCGGCAGTACAGTTCCTCCGACAACCCGATCAAGCGGGCTCTCTGGATCCTCGACGAGCGCGGCTGGATCGAGGTGCACCAGGGCAAGGGCTCATTTGTCGCAGCCGAGCCGCCCGCCTAGAGCAGGCTTGATCCTTGACGACGCACGACCGATAGTTCTAGAGAAGCCGAACCACCATCCACCACTCCAGGAATCGATCTTGAGAGCCAAAGTGAATGAAAACGCAGTAGTTGATCTCTAGAAACGCAGGTCAAGAAGT # Right flank : GGGATGGCCTGCTGCGCGAGCAGCTTGAGGACGCGTCGCCGGACAGGTGTAGACCGATGCCCTGACGTTGAAGACCGCGCCGCCTCTCGGCGCCGCGACCGATGTCGACGATGCCCGCCGGGCCGGAGTCCTGACCCGCGCCGCAGCTGGTGACCTCGCCCTCGGCCACGCTGCCACGCCACCCTCGCCCACCAGGTACAACCTGATAAATGTCGATCTCAAGACCGTCGATGCCGCAAAATGACCCTGCACCTGGCGGTCTCTGAGGCACCCGGCCTCAGGTCGTCGGGGGTTCGGGGAGGACAACATGCGGTTTGGCAGGCGACTGGTGGTTTCGGTCGCGATGGTTCTCGGTTTTCTGGTCCTGTCTGGGCAGCCGGCCCAGGCCGCCTACTACAACACGTACAGCGACATTGCCAGCACACCCGACACAGGATGCTGCACCGGGGTGCAGGGCTTCGCCGCCGGAGCCACCTACCTCTACTCGATCAAGACGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //