Array 1 167158-164609 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEW01000003.1 Lacticaseibacillus rhamnosus strain P4 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 167157 36 100.0 30 .................................... TGCGACTAACACCTGCGATCAAAGCGAAAC 167091 36 100.0 30 .................................... TGCCAGTTGCTGGAGGAGATCACAACGACT 167025 36 100.0 31 .................................... TGAAGACAAGGTTGCGCCCTGTACACTGTTA 166958 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 166892 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 166826 36 100.0 30 .................................... TAATGTGCCGGTGGGAGCAATGGTGTTATC 166760 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 166694 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 166628 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 166562 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 166496 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 166430 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 166364 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 166298 36 100.0 30 .................................... CGGCACGCTATTCCATCCGATTAGCTACTT 166232 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 166166 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 166100 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 166034 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 165966 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 165900 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 165834 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 165768 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 165702 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 165636 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 165570 36 100.0 30 .................................... AATAGCAACCGAAAGCGCTCCAGTGTCGCC 165504 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 165438 36 100.0 30 .................................... TGAACACGATGACGTAAAAGAAATGTATGT 165372 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 165306 36 100.0 30 .................................... AATAGCCAAGTAAATACCGGCACGATTTAC 165240 36 100.0 30 .................................... CAACATCAACAACAGCCGGCAATTGCTGCC 165174 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 165108 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 165042 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 164976 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 164910 36 100.0 30 .................................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 164844 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 164778 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 164712 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 164646 36 86.1 0 .......................AA.C....G...G | T,C [164612,164618] ========== ====== ====== ====== ==================================== ================================ ================== 39 36 99.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //