Array 1 1592755-1594917 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831776.1 Paenibacillus riograndensis SBR5 isolate SBR5(T) chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1592755 32 100.0 34 ................................ TTTTGGTTTTTAAAGATGGAAGAGTTGTAGAGAA 1592821 32 100.0 34 ................................ AAGGCACAAGAGAGCAGCCGAGCTACAGAACGCC 1592887 32 100.0 34 ................................ AGGGCCTTATCCATTATGACTACATCATATTTTC 1592953 32 100.0 34 ................................ ATGCTCTGTTTATCCTTGCTTCCGGGCCAAAAAT 1593019 32 100.0 34 ................................ CAATTGGCGGACGAACAGCAGTGGGGTTGGGTGG 1593085 32 100.0 35 ................................ CGAAACTGCCGGAAGTCGTGAAACAAATGTCCAAG 1593152 32 100.0 34 ................................ CCTAATCACTGCTACAAGCCGCGCAAGACTATGC 1593218 32 100.0 35 ................................ CGGGCGTTGTACCAGTCCAAGAAATCACCATGTAG 1593285 32 100.0 36 ................................ ATTTGAAGCTGCACAGGAAGCCGTCCGCAGGCTCTG 1593353 32 100.0 36 ................................ ATATGGAGCAATCAAGCCTTTATCAAAATCACGAAA 1593421 32 100.0 36 ................................ ACTGAAACAGTCAAAGAACTCAAAGAGGCCGTCAAG 1593489 32 100.0 34 ................................ CTGGTAGTCCATTGTTCACTCCAGCGGGATTATC 1593555 32 100.0 34 ................................ CAGATCAATTTAACATCGTCCATACTCGCACGGT 1593621 32 100.0 35 ................................ TATATACCGTGGATCATTATCGTGATGCTCATTTT 1593688 32 100.0 34 ................................ CATAAGATCATCCAGGATCTTGTCCTGCTTATTC 1593754 32 100.0 36 ................................ TTGCTGACAAGTGGCGAGTCTGTCATCCGCAGCACA 1593822 32 100.0 34 ................................ TGAATTCTTGCCGGATCTGATAAACCTCTTGTAT 1593888 32 100.0 35 ................................ TATTTTCACCTCTGCGGTAATTGTGCCGATCCGGG 1593955 32 100.0 33 ................................ CCCATCGCCCTCGTTGATTAGTTTTTTACTTCA 1594020 32 96.9 34 ..............T................. CTCCGCGCTCATTACACTATTTAACTCATGTTGC 1594086 32 100.0 34 ................................ AATGAGCATGACTGCCAATAGGCTGTTCACATAG 1594152 32 100.0 34 ................................ GCCTTGTCCCTGCATTTTGGATTTTGGCACCAAT 1594218 32 100.0 34 ................................ CAACTACTACAAAACCCCACTCGAACAATGGATT 1594284 32 100.0 35 ................................ ACTCTCTAAAGCCTCGATGTGCCATTCCTGCAATC 1594351 32 100.0 34 ................................ CGGGTGATCGGAGGAGACGAATAATGGCAGTAGA 1594417 32 100.0 35 ................................ TGCGACCTCTGACGCAAATGCAGCAGCCGGAGAAA 1594484 32 100.0 34 ................................ CGAATCATATTTTTAAGAATGATGGCGTGCTGCT 1594550 32 100.0 35 ................................ AGCCGCAACTGTAGCTCCTTGGGCTTACCATAGCT 1594617 32 96.9 35 .............C.................. TTGGACTGTTGGGTTATAGATTTGTTTGCTCATTT 1594684 32 100.0 36 ................................ ATAAGCAGGCACATCAGGTACAGGGGGTTTAACTGA 1594752 32 96.9 34 ........C....................... GCCTGCTTGGTGCTGAAGACAGCGGTAAGACTTC 1594818 32 90.6 36 ......T.C.......A............... AATCACAGAATTTGTTACAGAATTAATCTGCTGATA 1594886 32 71.9 0 .....C..C..C.C....A....T.CCA.... | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 98.6 35 GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Left flank : ATTACCCCGTGAGCTTAAGCTCCTACACGAAGGGGCGCAGCACGTTCACTTCCTTTTTTGCCGGCTACGAGGAATGCCCTCCGGATGTCCGGGCCGAGCGCACCCGCCGGGGCGTGAACCCGCTCGATCAGGCGAGGTATATCCTGAGCGTGCGGAAGGCGCTGCAGGGGTAGGCAGAGTGGAAAGAGAATTAGTAGGAAGAGATATTGTTTGCATGTGGCAGAATGGCATAGAATGAATTGTGTACCAGCATGAGAGTGTTGAGAGGAACTTTTTTTAAGATAGATTGGATAAACAGCAGATAGATTGGATGTTGGGATTAAATTTGTGGTGCGAATGTAAAGCGCACATGAAATCCCCGGGTCCTTCGCACCTGGATTATTACATTATTTGTATATAAAAGTTGGAATAAACATCACTGACGCTTTGTATTTAGCGTAATAAAGTGGATTTAAGAATGTTAAAAATGGATTTGTGCTGTTTTTAAGTGAGAAATCGCA # Right flank : TCCTAAATCCAGTTGAAACTTAAATTTTCTTCCAAGCCGCAAAAGCATAATGTTTGAACCTTCAAATAACCCCAGATACTGCAAAGCACCAGAAGTTTGCTGCATTAGCAAAACTTTTGGTGCTTTGTTGCATCCAGCAGACTTATTCCCGTGTGAATTTCCCCGAAGAAATGAATTTTATGTAGAATCATGGAAAATTAATCTGTAAAAAATTCCATATAAATGTATAATATTGCTATGAAATAATTCTTTTAGCTCATATCCGTGCTTCTTTCTATGTTAAAAGTACTAGTCTTGTAATTAGTCAGAAATGAGGTGAAGTTCATGTTCATGGATCCTAAAAAGGAAATAAAACCTCCTACGCTGGATTTGGTAATAAAGGACATACAAGAATCCAGAAAAAAGGTGCCGGAAGACAGATTCAATATTACTATAGTTACTCCTATGTTTGGGGGCGGCAGTAAACCTGGATTTACGGATTCTGCTTTTCCGATTCGAAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1603409-1605506 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831776.1 Paenibacillus riograndensis SBR5 isolate SBR5(T) chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1603409 32 100.0 35 ................................ ATTTCCAAGGCTACCATACATCCCAAAATCAGTAA 1603476 32 100.0 34 ................................ ACCAATCTTGATAAAGATCAGAAATACAAACTTG 1603542 32 100.0 33 ................................ TGTGATCCGGGAGCAGGGCGCTTTGTGTTCAGC 1603607 32 100.0 35 ................................ CCTATCGGGCAAAATTGTAGGCCCGGATGCTGCCA 1603674 32 100.0 33 ................................ CAATGGACGAATTAGAGCTTCTGCTAGAAAAAT 1603739 32 100.0 34 ................................ ATTTTACTACCATCCTTTCCCATGAAGTATGTTA 1603805 32 100.0 36 ................................ GCCCTCTATTGGGCCGGCTTAGATGAAGAAGAGGAA 1603873 32 100.0 33 ................................ CTGTATACTCTCGAACAAAATTATTGATGCTAT 1603938 32 100.0 35 ................................ CACAACGATTCAATCTTTTGGTTGATCTCCCCGGC 1604005 32 100.0 36 ................................ GGTATCAACGCCAAGATCGTTCATCAACGATTTAAC 1604073 32 100.0 34 ................................ AAAGGTACCAACGGCCAGAATGCTGCCTTTTCGT 1604139 32 100.0 34 ................................ TTGAAATCTTGATACTCTACTCCGGCGGCCTTAT 1604205 32 100.0 34 ................................ ACCGACCTTTGCGATGTCGGATGCTGATTGAGGC 1604271 32 100.0 34 ................................ AATACGGTTATGAGATTGCTATCTATAGAACCTC 1604337 32 100.0 35 ................................ GGCGGGATGGCCCAGGATATTAACAACTGGTCGAA 1604404 32 100.0 35 ................................ GATTACGTCCAGCCGATTCGCATCATCTACTTTGG 1604471 32 100.0 35 ................................ TATCACACCGGGAACGGTTTGAATTTAGAGTATAT 1604538 32 100.0 35 ................................ CAGGAACGAAGGAGTATGCAGATTATCAGAAGCGC 1604605 32 100.0 36 ................................ CCGCTGATTGGGTAAGGTACTTTTTATCAAATGATG 1604673 32 100.0 36 ................................ CTCTTTGGAGGGCTTATTTGTGGCTCCTATGCTGTT 1604741 32 100.0 35 ................................ CACCAGGGACGCCAGGAAGGCCGTCCGCACCTGGG 1604808 32 100.0 34 ................................ ACTGGGAGTGTTGCACCATTTGGTTATAGAAAAA 1604874 32 93.8 35 ........T...G................... CACTACCTGCTGCTCATTGAGCATCCGGGGGATTG 1604941 32 90.6 34 .......CT...G................... AGGTTGTCGGTGACGTTACGGTCAAAGATGACTT 1605007 32 90.6 35 .......CT...G................... GACCTTCCAGGCGCCGCCGTCTGCCTCGATCAGGG 1605074 32 93.8 34 .G.....C........................ ATAATGCGGCTACAGTCACCCGAGGCGACAAAGG 1605140 32 100.0 36 ................................ AGTTGATGATCGAGGAACAGCATTTACCAGTATCAA 1605208 32 100.0 35 ................................ TTGGCAGCATTAACATATCCACGATTAGCACTTGT 1605275 32 93.8 33 .......C....G................... CCTCCTGGAGTTTCGCTTGATATTCCAAATCAC 1605340 32 90.6 37 .......CA...........A........... CAAGGCAAGCGCTATCGCCTTGGTAAACGGGTTGATA 1605409 32 93.8 35 .......C..C..................... CGTTTGAGCTCGGCGTTGCTCCATTCCTTTACTTG 1605476 31 71.9 0 .......C.C..GCA....-A.A.......C. | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 97.5 35 GTCGCTCTCTATATGGGAGCGTGGATTGAAAT # Left flank : TCTAAATAAAGGTACGAGTATGCGTGGGAGCGTAAACTGAAATAGTTAAGCTGCTGGTTAGTCATCTGCTCCGTGCCTAACAATATGAATTAGAGTAAAGCTTTAAGCTAAGGAGATATTTTGTTCAATACTCTCAATTTCTGCCCATTACCATATGCGCTCAGTATGGAGATTGCGTAGTCACCATCAATTCAAGACTGACATTGCCACAATGTAAGAGTGTAGCCTTTTTCGGCTTGATAAAATTGTCATTAGTAGGGAAATATACTGCTCGCATGATCTGAAATGGCGTACAATACTCGGGTACCTACATTTGGAGGTCAAATTTCTGGTGCGAATGTATAGCTCACATGAACCCCCCGGGTCCTTCGCACCTGATTTATTACATTATTTACAAGAAATATTAGGATAGATTTCACTGAAACTTGGTATCTATCGTAATAAAGTGGATTTAAGAATGCTGAACATTAGTTTATGCTGTTTTTAAGTGCGAAATCGCC # Right flank : TAATAGTCAAACGAAACCGATAGGATATACGCATCTAAAAGCCCACACCATCTTAATATGAGTGGGTTTTTGGACGTTTACTTTTTTTGTGCGAAAACTGTAAAAAAATGTTCGATTGTTCTCCGGAAAATGTCGGATTTTTCCTTATTATGCTGTTATAATTAGGGAAACGTATGTTCCTTAGATGTGGTATTGTTCATCTGTTTGTTTGAGGAGGAGAACCATGGAATACATAGCTCACATCCGGGAAAGTGACATGAAAGTCCAGACCGTCACTGAGCATTTGTTAGAAGTGCGGACGCTAGCTGAGAAGTATGGTAAGAAGCTTGGAATCAAGTATATGGCCGGGCTCGCAGGGATGCTTCATGATCTGGGCAAATATACAGAGGAGTTCAGAAATTACATAGTGCAAGCCGTCTACCATCCTGAGGCCCCGCCCTCAAGAGGCAGCGTTGATCACTCAACTGCGGGTGGGAAATTACTGTTTGAACGATTTCATA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTATATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1613926-1617063 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831776.1 Paenibacillus riograndensis SBR5 isolate SBR5(T) chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1613926 32 100.0 35 ................................ AAACGCTGCACTTAAAGACTTGGCAAAAGTGGAGT 1613993 32 100.0 36 ................................ TCCATATGAAATGTACCGCGCATATGGTGTTTATGG 1614061 32 100.0 33 ................................ CCGTTGGCAATCGGCGCAGAAGCAAGGTCATTG 1614126 32 100.0 33 ................................ ATCATGACGCGCTGGCACGAGGATGATTTAATC 1614191 32 100.0 33 ................................ AAAGTCCGAGACGTCGAAATCATCGTTCTTGCT 1614256 32 100.0 36 ................................ CCGATTGAAGGAAACATCTGGGGAAAAGGATTTATG 1614324 32 100.0 36 ................................ ATGATGGATTGTACAAGGATAGCCGCCATGGTGAGT 1614392 32 100.0 35 ................................ CACTTATGGTACTACTGAAAAGGCGTTGAGTGGAA 1614459 32 100.0 34 ................................ ATTGCCAATGTCCTCTTGAAGCTTCTCATAGCGC 1614525 32 100.0 35 ................................ ACATGGCACCGTTTGTCCGGTGCTGTCTATGTGTA 1614592 32 100.0 34 ................................ AGCATCATCCGCCCGTATCTTCTCTGCTTCACGC 1614658 32 100.0 34 ................................ ACCCCATCCATTTGTAACTATGGGCTGTGACATG 1614724 32 100.0 36 ................................ CTCAGTTAAATGTGGGTACTTTGTGAATAAGTCCTG 1614792 32 100.0 34 ................................ CGTCAACTATCACACACTCGCGTCAATCCGTCAC 1614858 32 100.0 35 ................................ ATTAGTTGAATAACCCCTTGACCTGATGTGCGATA 1614925 32 100.0 34 ................................ AGCAGCAGTCTAATCATATAGATTTAGAGTATCC 1614991 32 100.0 34 ................................ TCAGTTTCCGCAGCCTTTGCATTTTCGGCTTTAT 1615057 32 100.0 33 ................................ CACTGCCTAAGACGGAGCGAGCCGCAGCGAAAT 1615122 32 100.0 33 ................................ ATAAACTCAACCTGTTTGACTCACACAGCTTTG 1615187 32 100.0 34 ................................ CAGCACCCGATCAAAATCCAGTCCACCCAGGAGT 1615253 32 100.0 35 ................................ GGAAGTAGAGAGCCTTACGAGCCACAAGACACACT 1615320 32 100.0 32 ................................ GGCACGGGACAAACTGGATGATTTATTGCTGG 1615384 32 100.0 34 ................................ AGGCTTGCCTAATTGTAATAATTTGTCGTAAATA 1615450 32 100.0 34 ................................ AAATTGCTATTAATAATGCAAATATTGCAGCAAG 1615516 32 90.6 34 ...........C..A..G.............. CTATCCGTGAAGACCTTTTCCCACGGCCCCCAAT 1615582 32 90.6 36 ...........C..A..G.............. AGGAGATCCGGATCAGCGCGCAGCTGCTTCGTATCT 1615650 32 90.6 35 ...........C..A..G.............. ACAATATTGGAATGCAAAACCTGTTTTCACATCCC 1615717 32 90.6 34 ...........C..A..G.............. TTGTTTGCAATTTAATTAATGAATACTTATGTAT 1615783 32 90.6 34 ...........C..A..G.............. TCTCATAACCAGAGATGGTACCATTAGAAACTCC 1615849 32 90.6 33 ...........C..A..G.............. TAAAATACAAAAACATTACCGAACCAACAATTG 1615914 32 90.6 33 ...........C..A..G.............. CTGGCGTCCCTGGTGGAATACCTGAAAGGCCTG 1615979 32 90.6 33 ...........C..A..G.............. GTGGACCGGGAAGGGAGGGCGTGGGCTGCTAAA 1616044 32 87.5 35 ...........C..A..G.A............ TCCTTATCGATCCGAACGGATATCATGGCATATAT 1616111 32 87.5 34 ......T....C..A..G.............. ATCCGAGAGTTATCACAGCGGGCCGTTTTGCATG 1616177 32 90.6 33 ...........C..A..G.............. ATCCTGACAGGCATCAAGGATAAGAAGTTGCAA 1616242 32 90.6 34 ...........C..A..G.............. TTCGCCTGGATGAGTGGGACACCTTTCTGTGCGA 1616308 31 90.6 33 ...........C.A...-.............. TTCTTCCCCACGTTGGCTTTGCCAATGTGATTG 1616372 32 96.9 33 ..............A................. AGTGCGATTTCCGTATTTACATCGTCCAGGCGA 1616437 32 96.9 33 ..............A................. GCTTTACCATTACGAGGGACATTACGGACCTCT 1616502 32 96.9 35 ..............A................. TGAAGGATCTCAAAGAAGTATGGGAAAATATACTG 1616569 32 90.6 33 ...........C.GA................. CCACGCGTTTGGGAATTTGCTTTCTCAGCCCTC 1616634 32 93.8 33 ...........C..A................. ACCAGCAATAGAACGGTGTTGGCGATACTGATT 1616699 32 96.9 36 ..............A................. TGAACAGGGCGACCATTAGCCCGATAGCCATCAATA 1616767 32 96.9 35 ..............A................. CCTTCAATGTCAAAAAAGTTCTGTAGGAAGCCAAT 1616834 32 96.9 35 ..............A................. AATTCAATAGACGAAGGGCTTTAACCTTGGAGGCC 1616901 32 90.6 33 ............A.A....T............ ATTACTCGGGCCTGTGATACGTACCGATCAGTG 1616966 32 90.6 34 ...........C.GA................. CTCCAAAGGTGCCTCACGTTCGGCCCAAAATAGA 1617032 32 71.9 0 .C.........CA.A...A...AC..CT.... | ========== ====== ====== ====== ================================ ==================================== ================== 48 32 95.6 34 GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Left flank : TGGACGAGTATCCTCCGTTTCTGTGGAAGTAGGTGCAAGGAATGTTGGTGGTGATTACTTACGATGTAAGCACCCTAAGTGGTGAAGGTCAGAGTCGGCTGCGTAAAGTCTCTAAGATCTGTCAGAACTATGGACAGAGAGTTCAAAATTCTGTTTTTGAGTGCGTTGTAGATGCGGCGCAGTTTGCTGAATTGAAAATAAAATTGAAGACTATAATTGATGATGATGAAGACAGCATAAGATTTTATCAGCTTGGTAATAATCACAAAAATAAAGTCGAGCATGTGGGAATAAAGAAATCCATTGACCTGGAGGGGCCCTTAATTTTGTAGTGCGAATGTATAGCGCACATGAAATCCCCGGGTCCTTCGCACCGGATTTATTACATTATTTGTTATAAAGATCAAGATGTTCTTACGTGATTGTTAATTATTTTGGGATTTAAGCGGTTTTTAATCATGATAAAAGTGTTTTTATCCTTTATTTGGTTAAAAATCGCT # Right flank : TTGTTAGAGAGAAAGCCAACAGCAAAAAAGCACCAAATTCCGCCTAAGCCGTATTTGGTGCTTTTTCTATCTGAGGTTATTCTTTGCGGCATACTTCGAACAATATATCCTTTATTAATATAGTGCCCAGTTTGCAGTAAAGGTTACTTTGCGAACACAATCCTGTACATCCCTTAGAAAAAAACGAAGGAAGCCATATGTCTAAACGCCGCCATTGCAATCTAAATACTCAAGCTAAAAACACGGAAACGGGAAAGTCTAGATTTTCTACTTAATCGGAAAGTAAATATCAATTTCAGAGCTTTCTATGTTTTCTCCTGCAAATCGTTCAGTATAACATTCAAAGTCATCACGGTTATCAAGCTCATAGCCGCTTTTAGGAAACCAGACGCCCCAAATGTAATGATAGGTCTGCATTAAGTCTTTTACGATTCCTTTATGAATAAACCTTGCATATTTTCCGCCGCGTATTGTTTTTCTTTCCATACCTCTAAGAATAG # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1619873-1622026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831776.1 Paenibacillus riograndensis SBR5 isolate SBR5(T) chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1619873 32 90.6 33 ............GTG................. CATTCGAAAATTTTTTTGAAGCGGAGTGTCTTT 1619938 32 90.6 35 ............GTG................. ATCACGTTTGCGACCGTTAGCTGCGTGTGCTGATC 1620005 32 100.0 34 ................................ ATTTTCCCGGCATCCATAGCAAACCTCCTGAATA 1620071 32 100.0 34 ................................ TTACTGTGAATAAACGGTATGTCAACCCTATGGA 1620137 32 100.0 35 ................................ ATATTCAGATTGTTCCTTCGCAAATTTCTCCCGCT 1620204 32 100.0 34 ................................ ATCGTCAGCAGCATCCACAATCGTAGATGGTCTT 1620270 32 100.0 36 ................................ TCCACGTTGCCCCATCCGTGATACGGAGACTTACCG 1620338 32 100.0 34 ................................ TAACGCCGGGTGCAGCAACACGCTGCGGGTACAT 1620404 32 100.0 34 ................................ GCCGTTTATGCTGATATACGTGTCGATTGCTTAC 1620470 32 100.0 35 ................................ ACATTCTTCCCGGGATGCAGCAGCGTGCCGGTGTG 1620537 32 100.0 33 ................................ TACATCTCTTTCTTGGTCAGGCCCGAAAACAAT 1620602 32 100.0 34 ................................ CAGAGGATATAATCGATCTGCACTAGACGGTCGT 1620668 32 100.0 33 ................................ CCTCCTACGTATGCTGGGGGGCTAATCTGTACA 1620733 32 100.0 35 ................................ CCCTGGAGGATGTGAACAAGTTTTTGGACATTCGC 1620800 32 100.0 35 ................................ GCGATTACATAATACTGCCGTACTTAGAGGAGATG 1620867 32 100.0 35 ................................ TTATCCCTCCCGTGTATGCTCGCCGGTATTTAAGC 1620934 32 100.0 34 ................................ ACAGTATGCAGTGATAGAAAGTAGCCCAACCGCC 1621000 32 100.0 35 ................................ TGATAAAAGTCACATTCAAAGCCAGCTGCCTTCAG 1621067 32 100.0 36 ................................ CATGACAAGGATGGACTTGCCGCGTCCGGATCGCGC 1621135 32 100.0 34 ................................ AGTGATATTACCATACTCATCGCGGGCACGTAAA 1621201 32 100.0 35 ................................ GCTCGATTAACGCCATCTGCGCCGTAATCCGTAGC 1621268 32 96.9 34 ..T............................. AAAACTCGGGTTTAGTGCAGACCAGATGTTTGAT 1621334 32 90.6 35 ......T.....GT.................. AATACAAACAACATCATTGAGAAAAGGTTAATTCC 1621401 32 96.9 35 ............G................... AAGCTGATCGTCAGTAGCCTCCTGCACAGCACTGA 1621468 32 84.4 36 ............GTG..G........C..... CCCTTAACTAGAGACGTTATGCGCACAGAGATCAGT 1621536 32 90.6 34 ............GTG................. CGCTGGCGATTTTAGCGGCCTCCAGATCAATCTT 1621602 30 87.5 34 ............GT.-...........-.... GGCAAGGACCGGGAAGGAAAAGCCGTCGCGGAAG 1621666 32 93.8 35 ............GT.................. CCTGTGTCGTCCTTTGCTAGTGCGGAAGATTGGAC 1621733 32 93.8 32 ............GT.................. ATTGCAACGATCTCTACGATGCTCGGTCCGTA 1621797 32 96.9 33 ............G................... AAGGACAAACTGTTTGAACGCGATTTGCGAGAT 1621862 32 90.6 35 .......T....GT.................. GGATATCTTTAGAGAAGCAGCGAGGTCTCGATTAT 1621929 32 93.8 34 ............GT.................. TTTAATGACTCACGACTAAATGAAATGTGGGCTT 1621995 32 93.8 0 ............GT.................. | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 96.7 34 GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Left flank : ACTTGATATTTTTTGCTATTTCTATAGGTCTTCACAAGTAGCGTCAAGATGAAACTAACAGTTACACCATTTTAGGATATGGGGGCTGTTGGAGGTTTGACTGAAGTTGGTCAGAAACTGTAAAAAAGTGTTCGATTGTTCTCCAGACAATGCCGGATTTTTCCTTATTGTGCTGTTATAATGAAGGAAACGTATGTTCTTTAGGCGTGTTATTGTTCATCTGTTTGTTTGCGCGGAGATATTGGCGGGAGTAGAACTCCAAGCACAAGAATAAAGTCAAACATGCAGGCATAAAGAAATCCATTGACCTGGATGGGCCTTTAATTTTGTAGTGCGAATGTATAGTGCACATGAAATCCCCGGGTCCTTCGCACCGGATTTATTACATTATTTGTTATAAAGATCAAGATGTGCTTATGTAATTGTTAATTATTTTGATATTCAAGCGGTTGTTAACCATAATAAAAGTATTTATATCCTTTATTTGGTTGGGAATCGCT # Right flank : TAAACTAACAAGTATCTAAAACACCTAACATCATGGTAAAATATTGTGACTTGTCTTGTTACAGTCCATCCTAAATTCAGCAGGTGACCGTGTTGAGATTACGAGAGTTCATGAGCCCTTCGGGGACCTCGGCCTACCGGCAGGCGAAGTGGATCAAACGTTTTTTGCAGACTTATTGGCTTGTAATTGCCCTGCATTTTCTGGCCCAGCTTGCGGCTTATACTTTTCTCCCGTATGAGAGGGGGGCGCATGAATTTTATTATGGGGTTCTGCTGTACCCGACTTTGCTGATGGGGGCGGTTGTGGGCATAGCCCAGTGGATTGACCGCCGTGCCTCCAAGTATTCGTTCATCTCTCTTTTTATGGCCGGTACCATTATTGCGATGATCATCATCCACCTGAATATGGATATCCGCATTATTGGAGCGCTTATGCTGCTGCCCATCTTCGCTTCGGCGATTTTTTACCGGCTGGATTTAACTTTTTTTACGTTTGCGCTG # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //