Array 1 22204-23250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOY010000012.1 Trichocoleus sp. FACHB-6 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 22204 37 100.0 34 ..................................... AAGTTAATGATACACCAAAAAACACACGACGACC 22275 37 100.0 35 ..................................... GATAGAGGATTGCAAACTCAACAGAAGTAATTCGC 22347 37 100.0 34 ..................................... TTGCCAACAACTCCGTAATAGCCCATCTTATTTT 22418 37 100.0 33 ..................................... TATAAACCAGCTCCTCGTAAAAAATAGATGGGA 22488 37 100.0 34 ..................................... AAACCTATGTAGATGGGCGATTTATTCACGCTAC 22559 37 100.0 37 ..................................... TTGAAATAAGAAGGATTAACCATCAAAAGAACATGAA 22633 37 100.0 36 ..................................... ACAAAATCAAGAGCTGACTCAGCTCCACAAGATAAA 22706 37 100.0 35 ..................................... ACAGAATATTTTATCGCTAATACTTTTTGAAGTTC 22778 37 100.0 32 ..................................... TACGGGAACATCTTCGTGAGCTGGAAGATGAA 22847 37 100.0 33 ..................................... CAAAACGAATAAAACGAAATTGAAATCTAAAAG 22917 37 100.0 38 ..................................... GTATCATTAATTCAAAGTTTTTTATGTGAGATTACTGA 22992 37 100.0 36 ..................................... TATATTATGGCTGTTTCGACTGGCGGACGTGGAAAG 23065 37 100.0 34 ..................................... TTAATTCATCTAAAGGGCAATTCTTAAGAGTTAA 23136 37 100.0 40 ..................................... TGGATTTTTGATTCTAAGGATTATCAAGAAGATGATGAAG 23213 36 81.1 0 ..............-.T....G.C.C.C...G..... | T,T [23232,23239] ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.7 35 GCCGGAAAACCTCTAAATCCCTATCAGGGATTGAAAC # Left flank : GTTTGGAATACTACCAAAGTTTTGCCCCAAGACAAGTTTCCTGGGCTGCTGCTTAATGCTTTGTTTGGTTATACAGATAGACTTTATCGGGTGCAAGCGATCGCTTATGTTCTATTTTTAGTCAGCATCGGTGGCATTTATTTGAACAGTTTAAAAGGTCGCCCCCAGGTGGCAGCAGCCAAGGATAAATCAGTCCAAAACACAATCAGTTCCGGACAGGAATAAACTGTTGGTTTTTTGTTCACCGCTTGCGTCAACCTATAGGTGTTTTTTTGAAAAAGTCAATTTTTGCGGCTCAAACGCTTATCCCGTTTGGATTTGAGCAAGATGACACCATTCCAGGGATTACTGCAAACGCTGTAATCCATACTTTGCCTTGCTTTGAGGCGGTTTATAAAAATGCAATCTTGACAACCCGGTGCTTGAAACAGTACATTCACTTTAGGTTGACGTAAACGAACCTCGAAAACTCCATATATCAATGTTTCCAGAACCCGGCA # Right flank : CGATAGGGATGCTCATCCGGTAGCGTGTAAAATTAGCAATCGGAAATTTTAGGAATCAGTGCCAACATCTTCTCAAATTCCCAAAATGAAGGTAAGTTGACATTGCGGGGGATGGGATGAGACTTTGGCATGAATGCAAATCAAGATTTAATCAGAGCAGCTAAAAAGGGCGACATCAAACGGATACAAGCATTACTCCACCAAGGCGCTGATGTTAATACTACCGATAGAGAAGGCACCACTGCTTTAATGTTTGCCGCCCAAAACGGCAACACTGAAATCGTGCGGGTGTTGCTAGACAAAGGCGCTAATATCAACCTTGCCAGAAAACAGTATGGTCTGACAACCTTGATGTTAGCAGCGGCGGCAAATCAGGTTGACGTGGTGCAAGCTTTGGTGGCTAGGGGCGCTGACGCGAACGCCAAAAACGAAGATGGAAGTACGGCGCTGATGGTAGCGGCGTTCAAGGGTCATGCTTCCGTGGTGCAAATTTTGCTAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAACCTCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 2283-2537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOY010000025.1 Trichocoleus sp. FACHB-6 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2283 37 100.0 35 ..................................... CTAGTCAAGGTTGTAGAAGGCTCGGAGCCAGTTAT 2355 37 100.0 36 ..................................... ATTCCCTCCGTTTCTTGGGCAGATGTCGATAGTTTT 2428 37 100.0 36 ..................................... GAGTCCCTCTTTAGAGGGCGCTTGCTTTTGGATATG 2501 37 91.9 0 .......T........................A...T | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 36 GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Left flank : GGGTTTGTTTGACTGTCGGAAGACAGTCCTACTTTCTGAACCCTGGTAGCTACCCGCCCATGATGCTGCCCCTATGAATACCTTCTTCATAGGTCGGGAAATTCCCGTGTATGAATACTGGAGTATATAGTATACAGGAAAGGTGCGCTCCCAGCAAAATGAGGTGAGGCTGAGGGAGAAGGTAAATTTTCCCAAAGCCCTAGCCCTTGTTAACAAAGGTGCAGATTACTCATCCTTGTTAATAAGGGTGCGGATTACCGCAGTGGTGGCTCCGAACTCGTCCCCTTCGGGGGAGCCCTCCCTAATTTTTTTTTGACGGCTGAAAGTGGGATCAAGATCCCTGAGTAGCCGTCAGACGTTTAAAACTCTTGTCCCGTCTTGATTTTAGATGTTCACGGCAGTAATCTTTCTCCTTGGGAAAGAGCTGAAATGACCAATTTAAAATCAGCCGACAAAAATGTATTTGTCAGCTTGTTTAGACAAGGGTTTCAGCGGGCGCG # Right flank : TGTTATAGAGTTGCGCCAGCAATTTGAATACTAATTGTAGAGAGTGTCAAAAATTTCAGGAGGGGGTTGAAAGGAGCGCCTGCCTTACAATTAATTTCGCGTGACTACATCTTGACGACATTAATTTGTTAACGGTTGTCGGCACTAATTTAAGGACACGAATTTGTTAAGAACGACGCTAAGCGACATTAATCTGTTAACAGCGACATTAATCTGTTAACGACGACAAATAATGTGTTAATCGACAAAATCAATGGGCGGTACTGGATTTGAACCAGTGGCCACCTGCTTGTAAGGCAGGCGCTCTACCGCTGAGCTAACCGCCCAATTTCACACAATAAAATCAATAATAGCAGATGTTTTCTGAAAAGTGTATAGTTTGCAAAAAGAAGAAATTTACACCTGATGCCTTCTGGTGCAACGCACGATCGCATAACTCTATGGTGCTTGCCAATGGTGGCGGGCGCGACGTTGGGGTTGACTCGCAGTAGCAATCTGAC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 17083-18547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOY010000023.1 Trichocoleus sp. FACHB-6 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 17083 37 100.0 34 ..................................... GATGAAATCCCCTTCTAAAGATGACCGCTTACTC 17154 37 100.0 34 ..................................... TACGCCATTTCAAATGAACCAAGTCCACCTACAG 17225 37 100.0 36 ..................................... GCAGAGCTTCGCACCCAAGAAGAGATAGATGCAATA 17298 37 100.0 35 ..................................... GCCTCCAGTAATTCTGGGTCAATCAAATCAATTGG 17370 37 100.0 35 ..................................... GTATGCAAAACGCAAAAATTAATGTTGCCGATAAT 17442 37 100.0 34 ..................................... TTTGGCCCACTGCCAGGCTTCCGACCCTGTCCAC 17513 37 100.0 34 ..................................... CAGAAAGTCATATCGATATTTGATGCCAAATTTT 17584 37 100.0 35 ..................................... GCCAGTATGGTGTATTGGCAGGCTTAACTCAAGCC 17656 37 100.0 33 ..................................... CCAGCAGCAAGCCGCCGATAGCGCCCGCCAGCA 17726 37 100.0 33 ..................................... AAAGAACACATCCGCATGGTTGCTATGCTGCAA 17796 37 100.0 33 ..................................... ACTCCCACCAGCAACGCCGAGGCGATTATTGCC 17866 37 100.0 34 ..................................... GCCAGCATATTGCCATCCTTAAACTCTCCAGCGA 17937 37 100.0 36 ..................................... GAGTGCGGAAAGTTGAATCGCATTCTGAGTTTCAGT 18010 37 100.0 35 ..................................... GATACCTGGCGCATCATTCCAAGATACGGGTCGGA 18082 37 100.0 34 ..................................... TATGGAAACTGCTAGAGCAAATAGCTTTGGATGT 18153 37 100.0 34 ..................................... AAACTCAATAGATGCTGTCACCTTGCCATCATCG 18224 37 100.0 32 ..................................... AAAAAGGTAAGTCCCTCAAGAATAATTCTTCT 18293 37 97.3 34 ....................T................ ATACAAGAAAAAAGATTTAGCTTTTCCCTTGAAA 18364 37 100.0 37 ..................................... ATTAGCGAAACGCCAGATATTGACAAAGCTCATGACT 18438 37 100.0 32 ..................................... ACGAGCAACTTAGCGATCGCTAAAATTGTGTA 18507 37 81.1 0 .C..................GG.CT..CC........ | TAAT [18524] ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 99.0 34 GTCGGAAAACTCTATAATCCCTATCAGGGATTGAAAC # Left flank : GGACAGTCGGCGCACTAAGATTCATAAGATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCGACTTGACTACTACGCAGTATGCTAAATTGCGATCGCGTCTGGCGAAGATGATTAAGCCAGAGCAAGACAGCATTCGCTTTTATTTCCTCTGTGGTTGCTGTCAGCCGAAGATTGAGCGCATCGGTGGCGAAATTCCAATGGATACTACTGTGTTTTTTGCTTGATGCTTGCGTCAACCAGTAGGTGTTTTTTTGAGGGGTTCGATTTTTTTGGCTCAAACGTTTATCTCGTCTAGATTTGAATGCGATCGCTCCCTATCAGAGGTTGACGCAAGCAAGCCCTGTAACCGTTACTAGAAGCGGTTTTGAGGAAATTTTGAAAATTCAGCGTTTGACAAGCCGATCTCTGAAATGGTACATTGACTCTAGATTTACGCAAACCAACCTTGAAAACTACATATATCAAGGCTTTCATACCCCGGCG # Right flank : CTTGATTTCAATTCACATCTTGGACTATTCTCAATAAGTTCCAAAGTCCGCCAGAGATTTTAAATAACTATCACCAAGTATTTTAAAAGGTGCGATCGCATTTTCAGCTAATCGCACCTTCCGGATTACTCCACTGTCACCGATTTTGCCAAATTCCTTGGCTGATCCACATCCAAGCCGCGACGCGCTGCAATGTGATAAGCCAATAACTGCAAGGGAATCACCGTCAAAATTGGCGAAAGCAATTCTTCCACAGCCGGAACAGGTAACAAATCGTCAAAAGTTTCCGCCGCCTCCGGGTCATTCATCGGTGTCACACCAATCAAACGGGAATCCCGCGCCTTAGCTTCTTGAGCGTTCGAGAGAACCTTTTCGTACACATTACCCGGCATAGCGATCGCCACCACAGGAACTTTAGCATCCAACAACGCAATCGGCCCGTGCTTCATCTCCCCAGCCGGATAACCTTCCGCGTGGATATAGCTAATTTCCTTCAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAACTCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 52808-58586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOY010000065.1 Trichocoleus sp. FACHB-6 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 52808 37 100.0 35 ..................................... TTTTAAGGATATTCCTTTTTAGATATGCTCCAAAA 52880 37 100.0 35 ..................................... TTGTGCCTGAGCTTTCCAATCCTCCAGAAGCGCCA 52952 37 100.0 35 ..................................... AGCTGATGGAGAGGAGAATGCGATCGCGCTGCCGT 53024 37 100.0 35 ..................................... TATTGCGACAGCGGGCCATTTTGATGGGCGCTTAA 53096 37 100.0 33 ..................................... ACTTAGTATTCAAGACAAGGATGAACTCCTAAA 53166 37 100.0 34 ..................................... ATGTCCTATTTGTCAATGGAGGCGCAGTATGCGC 53237 37 100.0 34 ..................................... AAAATTGTTCGTTTTGTTACCTCTGAAATAGGGC 53308 37 100.0 35 ..................................... GAAGTATATAAAATCTTCGATTGCTGCTAATTTTA 53380 37 100.0 37 ..................................... CCCCCGAAAGTGAAAAACGCCTTTGCATATATGATAA 53454 37 100.0 36 ..................................... TGCTTATACCTATGCTGAGGCTACTGAAAAAATCAC 53527 37 100.0 33 ..................................... TAGTTGCTCTCGACTTGCAACTGCGTTTTATCC 53597 37 100.0 34 ..................................... CTACAGAACATAGTTTTAGCTTGATTATAAGCAA 53668 37 100.0 34 ..................................... ATAAGAAAGAACGGCCCCACGCTTACCCATCTGC 53739 37 100.0 36 ..................................... TCTTTTTCTGTAAACCAGCCTCGTGGTACTTATGGA 53812 37 100.0 23 ..................................... TCGATGGGCTTGGCTTCTGTCTA Deletion [53872] 53872 37 100.0 35 ..................................... AATCAATTACTAAAAAGGCCAGCTTAATTGAAAAG 53944 37 100.0 34 ..................................... ATATCTAAATTCAAGAACGCGAATAAATCGCAGC 54015 37 100.0 37 ..................................... TTTGACAGCTAGGAGCATACAAGTGAAGGTCTACAAG 54089 37 100.0 33 ..................................... ATTAATATTTATTTACAATCGCTTCACCTAGGC 54159 37 100.0 33 ..................................... CTAGAATTTGCCGCTGTAAGGATGCGATCGCTT 54229 37 100.0 34 ..................................... CTAATGCCAATTGAAGTGTCAATTGGATTTTTAT 54300 37 100.0 37 ..................................... AAATATCCCTGCTATTATGAAGGGGAATTTAATTATC 54374 37 100.0 35 ..................................... GCTTGCTCATCCATTGAAGTAATCATCGCCCCATA 54446 37 100.0 33 ..................................... TGAGCAGGCGCAGGAAGCGCCCAGAAAGATACA 54516 37 100.0 41 ..................................... ATCAAATTATGATTCATTCTTCCTGGGGTGGTACTCCTCAT 54594 37 100.0 34 ..................................... GCAACTGAAGGCGCGGGAACGATTGGGAATTATA 54665 37 100.0 33 ..................................... GCGGATTAATCCAGCAAATGTAGAAACACTAGA 54735 37 100.0 35 ..................................... GCGAAATGGCAACATATATACTTGGAAAATACGAC 54807 37 100.0 33 ..................................... TATTTTTAGTAAACCTAGCCCGGATAAAACCAA 54877 37 100.0 35 ..................................... TTAGACGAGGTTACAAACACAAACAAAGTAATTGA 54949 37 100.0 34 ..................................... TTCCGTATTTATGCCATAATTTCATTAATCTCTT 55020 37 100.0 38 ..................................... GCGGAATGGCAACGGGCATATATTTTGGAAACTGCCGA 55095 37 100.0 34 ..................................... AAACATTAGGAGAGCCAAAAAGGTCAAATGGGAA 55166 37 100.0 33 ..................................... CACCACCAGAAGAATCATTTACTGCTTTCCAAT 55236 37 100.0 35 ..................................... TGAGAGATTTCTCTATCTCTCTCAAAATTCGCAAT 55308 37 100.0 33 ..................................... AAATTAATTCCTTTGCTTTTGAGTATCTGACCT 55378 37 100.0 35 ..................................... TTTGGAAAGCCCGGAAAACCCGGAAGGCTGAGGAA 55450 37 100.0 38 ..................................... TGGGATAAGCATAAGGCTTATGCAGAGCAGGTTTCAGA 55525 37 100.0 37 ..................................... TTTGTTATGGCTACTATAGCTTTAGTGATTAAAATAT 55599 37 100.0 33 ..................................... TGAGAGCAGAAAATTTCCTGAGTTTTATGTTAA 55669 37 100.0 34 ..................................... ATGAGCAGGGGAGCTGAGCCAGCAATCAACAAAG 55740 37 100.0 36 ..................................... ATTATCGCGTAATAGTTCCCCTTTCGCACGCTTTGA 55813 37 100.0 37 ..................................... CTCCCCCTCCCCCCAATCCGGAGCCGGAAGACCCCAA 55887 37 100.0 36 ..................................... AAACGAGTTTCTAAAAAGCGGAAAAAATAAAGTTTT 55960 37 100.0 34 ..................................... CTTATACTTCCCTTTAGCTTCCTTTCCTACCGCT 56031 37 100.0 37 ..................................... AATTTAGGCTTAGGCATCTGTATTTCTCCATTCTAAT 56105 37 100.0 34 ..................................... AGAGAGAAAGGTGGCAGAATCACCAGATATTCGA 56176 37 100.0 37 ..................................... TCAAGCATCGCAAGCGGCTCAAACGGAAGCACAGAAA 56250 37 100.0 38 ..................................... AGGAAGTTATGGTTTGCTTGATTGCTACGACCTGGTTT 56325 37 100.0 33 ..................................... TCTGCCCCGTCTGCCAGTGGAGGAAACGTTTGA 56395 37 100.0 35 ..................................... ACTCGTGAAAAAGGTAATTCAGATTATGCACATCC 56467 37 100.0 35 ..................................... TTATTCAAACCCGCATTGCCAATATTGGGAGCAGA 56539 37 100.0 35 ..................................... AAATTGTATTGCATACTCCGGCATTGCACAGTAGA 56611 37 100.0 34 ..................................... ATCTAATTGTGTATTACATAGAGAAGTACACAGT 56682 37 100.0 33 ..................................... CTTTCATCAGCTCTCTTGCTTGATCACTGTTTT 56752 37 100.0 34 ..................................... CAAATAAAATATTTAACTCAGGAATTGCTATTTT 56823 37 100.0 33 ..................................... TTACAGGTACAGCATAGAGAATGTATATGTAGA 56893 37 100.0 36 ..................................... TATGATAAGCGCTTGGAAAGTGAGGGGGAAACAAAA 56966 37 100.0 34 ..................................... ATTTTAGAGCGATTGCTTTTCTTACACTTGCCCA 57037 37 100.0 34 ..................................... AGTTATCTTACTGGATTTATAAGTCAATTTTCCT 57108 37 100.0 37 ..................................... TTACTTTGACAATCTGACTCTACAGGATGTCTTGAAA 57182 37 100.0 35 ..................................... GAAACCTCTACATACATCTGGATTGAGTAAAATAT 57254 37 100.0 35 ..................................... ATCGGTGCTAGTTGACTCCGGTTCATGGCTTGAAA 57326 37 100.0 34 ..................................... GACCAAATTAAAGCTGAGGCTGAGGCTCAGAAGA 57397 37 100.0 36 ..................................... ATAATAATAATCCCGTCTTGCATTACTCTGCTCTAA 57470 37 100.0 35 ..................................... CAAGCTTTGAATCAGCTTTAAAGCCTGTTCCTGGC 57542 37 94.6 35 .........C..T........................ CAAAACGTCATCATTTTGTAGCTAGACCCTCAGAA 57614 37 94.6 33 .........C..T........................ CACATAAACCGCAGCAACCGCCACGCCCGTCGC 57684 37 94.6 34 .........C..T........................ TGGAGAATTGGAAGCTAGTATTGTAGAAATGTAA 57755 37 94.6 35 .........C..T........................ AATTGATTTGTAAATTGCATCCTCAAGTTTACTCA 57827 37 94.6 34 .........C..T........................ GCCAAGGTTGGCGTACTTCGCCATGATTTCAAAG 57898 37 94.6 36 .........C..T........................ CCCTCAGTTCCGGGTAAGTAAATCACATTTGTTAAA 57971 37 94.6 34 .........C..T........................ GCGATACCACAGTCCTTCGCCCCACCAAAATTTT 58042 37 94.6 33 .........C..T........................ AAGATTGACCGTAGCTGGAAGGGATGCTCCCTA 58112 37 94.6 33 .........C..T........................ TCCGAGGATGGTCTGTGGCTCAGCAATGAATCT 58182 37 94.6 34 .........C..T........................ ACTTGACAAACATAAAGCCTCTCAGCTATCTTGG 58253 37 94.6 36 .........C..T........................ TTTTGGTCAACTTTAGACTTCCACATTCCCCCTAAA 58326 37 94.6 36 .........C..T........................ ATTCATAAAAAGCAAGCGCCCAAAAAATCCGGGGTT 58399 37 94.6 38 .........C..T........................ TCAGTCATGACTAAAGAATTAATGAAAGGATTAATGAA 58474 37 94.6 36 .........C..T........................ GGCACCGGACGCTACGCACCAACCAACGCCCAAACA 58547 37 75.7 0 .........C..TC.................GTCCTA | A,TT [58572,58575] ========== ====== ====== ====== ===================================== ========================================= ================== 81 37 98.8 35 GCCGGAAAAGTCCTAAATCCCTATCAGGGATTGAAAC # Left flank : AAGAGTTCCAGGGAGTCAAGGGAACCCTAAGTATAGGCGATCGCGTAATCAAGTTGACTGATGCCAAGTTAACAGGTGATCGTCTCAGCTTCAAGACCGTCGAGTCGGTGAATGGAACTGAGGTAACGATGCAGTTTGATGGGAAAATTCAGGAGGATGCGATCGCTGGTAGTGTCAATTTGGGTGGCAATGAAGCACAGCGCCGCGATTGGGTAGCCAAGCGTCAATCATAGAGGCGATTTTTAGTTCAATGCGTCAACCTGTAGGTGTTAAAATTCACCAAAGCTAAAAAATGGCTGAATCCTTCTGTGTGTAAGGATTTAACTGATGCAATCTAATTGTACGGTTGGCGCATCTGCTGTATTGCTCTCGTACCGAGCTTTTCAGACGTTTTCACTAAATGAGACTCTTGCCTAATCCGCGCCAGGATGATAATATTCCAGAGGTTGACGCAATTGCACCTCGAAAACTACATACAGTAAGCCTTTCAGATATCGGCA # Right flank : AGCGATCGCTCACATCAACTATCTGGGTCTTGATAAAATTCTTGTAGCGCTTGCTGTTGAGTGCGACGGGAAGGACGACGATATTTTTTAGTGTTCAGCCTGGGTTCGTATTGGTTTTGCCCTTTGCCCTTGGTTTTCTCCTTCATAGCGGCATCAGGATCGGATTGTTGGTGGAGATGTTCGCTGCGAGCGATCGCATCTTCCAAAAAATCTAGATAATGCTCGTAACGCTCCCAATCTCCACTAACTGCACAATTCGGCTCATCGCGATGCAGACAGTCGCTAAATTGACATCTTCCCACTTCTAGCCGCTTCTGCGCTTCGGGAAAATATTGGACTAACTCCTCTGGCAGACAGTCCAAGTCTGGCTGATTGAAGCCTGGAGTATCTGCCAGCAGTCCACCTGTCGGCAGTTCAAACAGTTCTACGTGTCGCGTCGTGTGACGACCCCGGCTGAGTTTCCCAGAAACTTCCGCCACTCTCAAATTGACATCTTCAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAGTCCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //