Array 1 168689-169021 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000012.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168689 28 100.0 33 ............................ GGAACAGCAGTCCGACGTCAGCGTGGTCATGAA 168750 28 100.0 33 ............................ CAGCGTCCAGGCATAGGCCACCGTCGGATCGGC 168811 28 100.0 33 ............................ TATGGCGCATCTCGGCGTGTATGCGGATGAAGG 168872 28 100.0 33 ............................ GGAACAGCAGTCCGACGTCAGCGTGGTCATGAA 168933 28 100.0 33 ............................ GTATATGTCCCTCGTGCTGTGTCGCTGGATCGT 168994 28 75.0 0 .....A.....G.........T.TTT.A | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 GTAGGCCCCGCACACGCGGGGATAGACC # Left flank : CGAGCAGGCGCGCACCCTGCGGGACACGGTGACCAGGTTGCTGTGCCAATTGCCGGGCGGGGGTGGTGTCCGGTGAGTCAGCCCCATACGCAGCTGGCCGTACTGCTACGCCGCTGCCAATGGATGCTCGACGAAGCCGCCCACCGACTCGGCGGCAACCAACTCCCTGCCACCGATCGACGGACACTGGCCGACGCACTGGACGAACTCGCCGCCGCGCTGCGCGAGTACCGCGACGAACCCGCCGAGGCAGGTGCCGACGAGGACGGGCCACACACGGCCGGGGACGGCCCTGCGTGATGCCCACCGGACGCGTTGACTCCACCACCGGCCAATGCCTTAATCAGACACCGGAGATCCGCCCCACGAACGACGACAGCTCCCCGCCTCGGTGCGACGATGGCGCATTGTGGGCGCCGGTGGCGCCTACTAAGATCCACGCCACCAGTACTTAAGGTCACAATCGAATAACGCGACCGCGGAACCGCAGGGCAAAAAGG # Right flank : ATCGATCTGTTGCGGCCTGCGGCTCGCTCGCCACGAACGGCCGCCAGGGCAGGTCGTTGGCGAGTAGCTCCCGAAGTCTCGTCACCTGATCGCGTTCCCGCTATCCTCGGTGCGTACCTCTTCGCGGAGGTTTTTCCCCCGGTCGACGGTCCGGGGGTCCACGAAGAGGTCGGTTTCCACGAAAAGGGTGGTTCAGCGTGGGTGCTGATGTGGGCTACCGGATCAAGGGGGCTCGTCAACGAGCCGGCATGTCAAGGCCGGTACTAGCTGGTCTCGTGGGGCGCTCGGCCGAGTGGTTGAAAGCGGTCGAAACCGGACGGTTGCAGGTTCCCAGGCTGCCGATGCTGGTCAAGCTCGCGCGGGCGCTGGGTGTCTCTGATCTGGCGGAATTGACCGGAAACGGTGAAGCGATCCCGGTGCATACTTTCGCCGGTGGGGTTGAGCACCCCTCCTTGAGTGGGGTACAAGTCGCACTAACCGAGTACCGGATCGGTGGACAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 209229-208957 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000009.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 209228 28 96.4 33 .T.......................... GTCCCGGTCGAGCGAGATCGGCGTCTTTTCGTC 209167 28 100.0 33 ............................ CGCGCCGACATAGCCCACCCGCTTCGGGTCGAG 209106 28 100.0 33 ............................ ATCACGGCTGCGGTCCATGACGTAGTGCGCCAC 209045 28 89.3 33 ...........A.........G.G.... CGATGCGGCGGATTCCTGGAGTCGGTGCCAGTC 208984 28 85.7 0 .T.....................G..GA | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 33 GCAGGCCCCGCGCACGCGGGGATAGACC # Left flank : CCGCTGCCTCCCCTGAACCCGCATCGGCACCGGAACACCCCGAGCTGGCACTCATGCGCCGCGTCCTCGACGGACTCCACCGCCTCTAAACACCACCGCGCCCCAGCATCCGTCCCCCACGACCACTCTTCACCCAGACCGGCCCGGAACCGTGCACTCGGCCAACCCCGACACCCGCCGAGACACACCGGGCCACCGGTGGTGGCCGGGCGTCAATTTCCCACGAAATCGCCGCGCGCCTCCCCACACTGCGGCGACGATTTCCCACGAAATGTACAAACCGCCACCACCAAACCCCGCCCGGCCGGGCCTCCCTCCCCACTCCCACCCGGCCGGGCGGGGACCCCCCACACAGCAGACAACAATGGTGGAAACCGCTACCGGAGTCATCGACAATCCAGCCTCCGAAGCGGTTCGCCCGAAGCTTATGTGTCCGAAGAGGAGTAACCACGTGGTTCTCACAACGCCTTCACGCCGCTAGAATCCCAGCGCAATGAGGG # Right flank : CAGAAACCGCGCCTCCGGAGCGTTCCGGAGGCGCGGTATTCGCTCGCCGGGATTCAGTCGAACCGGTTGGCCTTGACCGCGTCGATGAACACTGCCCACTGCTGAGCCGTGGTGGTGAAGTATCCGGCGGCGCGGTTCTTGGTATCGCGCACCGCCGCGCCGGAGTGGACACGACCGACCTCGACGCAGCTGGTTTCCTGTGAGGAGTAGCTCGACTTACGCCATCCGCTTATGTCGGGCATGATTTTCCACTCACTTTCGTGAAGATTCCGTGTGGACGTCAACGGCATTTCCCATCACGAAAACGCCGAGAATTCCCATCACTTCCGCGTGAAGCTCCCGTCGTCGTTCTGCACGTAGCAGCCGGAGCGATCGCCGGTCTCCTCCATGCGCCGCAACATCGCACGTTCCGCTTAGGTCGGTGGATTGGCAGCGCTCGTGGCCGTGGTCCACCACTCCGTGAGCTCTTCCTCGGTAAACCCGTACTCGCGTTCGAGGTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGGCCCCGCGCACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 184876-185392 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000004.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 184876 28 100.0 33 ............................ CTCACTCGATCACTCTCCAAGGTAAGTAAGAAC 184937 28 100.0 33 ............................ CTCGTGCCACCGTGTTTCGGTGGGCATCTCGCC 184998 28 100.0 33 ............................ GCGCTCACGCTCAGCCTCGTCCTCCGCACGCTC 185059 28 100.0 34 ............................ ACAGGTCTGTTCTGCCTGACGCGGCTGCGGCGGC 185121 28 100.0 33 ............................ GCTTGAGCAGTACCAAGCCGAAGTCGCCGACGT 185182 28 100.0 33 ............................ CCGGGCGTGCGGCTTGTCGAGCAGCCGGTTGAT 185243 28 100.0 33 ............................ CGTGATCCACCTGTTTTGTTCGTGCATGAGTTC 185304 28 100.0 33 ............................ ACGGAGCCTGTCGTTTTCGGTGGGCACTCATAA 185365 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 33 GTAGGCCCCGCGCACGCGGGGATAGACC # Left flank : TAGATGAAGAAGTCGTACCACTCGATGGTGGTGCCGATGAGGCTGGCGAAGGCCACTCTCCGGGAGTGGGGTTGTGACGTACCGACCATTTGGTATGCACCCTTCGTGTCGAAGCTAACGGGGACTCGCACGGACAGGTGGGTGTGGCGCAGATAACTAACGCTGTAAGTTTTGGGAACGTTAACGGCGGAGCGCGGCAATCACAAGGGGGCGGCGGAACTCGATCTTGAAAAGGACGAAAAGGACCGGCGCCAGCAGAGCGGGCGCCGACGGAGAGCGGGAACGCGCGGCAGGGGCGCGGCGGAAGAGCGCGCGACCGTCTTCCGGGGGTCAAGCCGCCCCGGCACAGCACGGTCCACAATGGTCGTACGCTGTGGCGGGAGAAGTGGCTCGCGGGGACGATCCCCGAGCCTCGTCGTCATGACTGACGATCTGGAGGAGGCCGGAACGAAGTGGTTCTCACAGCGCGTTCGCGCCGCTAGAATTCCAGGTCAGTGAGT # Right flank : CTACGTCAGTCAGGGGTATTTCCGGATTGACACCGTAGGCCCCTCGGGAGTGCTCGGGATCAGTCGCGGCGGGCGCCCTCCGGCCAGATCACGGTGGTCGGCAGTGCACGGTCCTCCGCCGCCGCCACGATGTCGGCGGTCCCGCCGTAGCCCCGTGCCGGTTCGCCGTCCCACACCGCGATCAGCCGGTCGGCACGGTCGATCATTTCGAGGCTGGCGTCCATGTGGGACCGCGAGGTCGATTCCACGTGGTTGAGCCGCACCACGTCCGAAGCACGTGCCATGAGGGCGTCGTAGATCGGGTGATGCTCTGCGGGAAGCCCCTCCCGGTACTGAGTCGCGGGCACGATGACCACGAGCTCTCCCCCGTGATCGAGCACAGCCCGGGCGAAGAGGCTGTCGGCGCCGTCCGCCAGGCAACTCAGCCCGACGACCTCGGGAGTGCTCGCTATCTCATCGCGGAGCGCGGTGTCCACGAGTTGTTCCGTATCGCCGGGGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 191639-192278 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000004.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 191639 30 100.0 31 .............................. GAGCGCGCCGAACTCGGCCAACTCGGGCGGC 191700 30 96.7 31 .............................T AATAACGTCCGCACCCTGGATCTCCTTACCA 191761 30 93.3 31 ............................GT CGTGCAGACCATAGAGCCACTGGCACGTGTC 191822 30 93.3 31 ............................TG GGCTAATGAGGCTGGATATCTCACTGGAGGG 191883 30 96.7 31 .............................G CCTGCCTGTAGCAGGTCCGCAGCCAGGACAG 191944 30 96.7 31 ............................T. GATGCGGCCACAGGTGGCGGCGTCTCCGGCA 192005 30 100.0 31 .............................. GCGAACGGCCCGTCATGGTCGATGTCGTGGC 192066 30 93.3 31 ............................GT CCGCCCCGGTCGAATCGAACTCGTCGCAGGG 192127 30 93.3 31 .......................A.....A GCACCAGCCCCAGCGCCGGGTCGGCTCCGTA 192188 30 93.3 31 .......................A.....A GTAGGAACACTGTTTGCGACAGAAACCCGAG 192249 30 83.3 0 ...........A.G..........A...TG | ========== ====== ====== ====== ============================== =============================== ================== 11 30 94.5 31 GTAGGCCCCGCGCACGCGGGGATGGACCCC # Left flank : GGCAACGGATGTGGTCAGAGGATGTGGAACGGCGTGGCTCGGCGGATCACGGTTCGGAGAAACCGCCCTCCCTCGCTGGCCGGGCACTGCCTGCCGACGATAAGTCCGAAGAATGCGTCGATGACGGACACAACGCAGACGAACCAACCAACGACCAGCTGCACGGGCACGTACGGATGGCTCACTCCAGCCAAGGGAAGAGCCGAGGCCGTGCTAGACGAGCGATGTGCCGTCCCTGTCGCGGAGCGCCAGTGAGCTCTTCCTCACCACCACTGAGAGACTCCGGGAGACAGTGGTGTCCCTCGTCCAGCGCTACGATTCAATCCTGCACATCAATCCACAATGGTCATGCGATGACTTGGTGAGCACCCCCGCTTCGGGGTGCTGGAACAAGCCCGGAAACACACGATCGTGCTTCGTCACCACGAACATGGGCAGGAGGACAGAACGAAGTGGTTCTCACAGCGCATTCGCACCGCTAGAATCCCAGCGCAGTGAGT # Right flank : GTCGCCCCTGCCGCAGCCGCTTGACCACGAACCCCACCGTCGCCGTCGGCGCTCACCGCGAATCCGGGGCGAAGAAGACCGGCAGCCGGTCAGTCGGGCAGCACCTCGCGCATGACCCGGATTGTGTTGCCGCCCATGATCGCGGCGATGTCGGCCTCGGAATGCCCCCGTTCACGCAGTTCCCGCGTGATCACCGCGATGTCGCTGGTGTCCCAGCCGACCGTCGTCGACCCGTCGTAGTCGCTGCCCAGCGCGGCCGTCTCGATGCCGCCGACGTCGATGACGTGCTCGATGGCGTCGACGACTGCGGCGGGAGTGGTGTCGCAGACGGCGGCGTCCCAGTAGCCGATGCCGACGACTCCGCCGGTACGCGCCACGCCGCGGATCTCCTCGTCGGTCAGGTTGCGGTTGACATCGCAGGTGGCCTGCACACCGCCGTGGCTGTACACCACCGGTTTCGTGGCACGGTCGAGCATCTCGGCCACCGCGCGGTGACTGGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : GTAGGCCCCGCGCACGCGGGGATAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 196252-196830 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000004.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 196252 30 96.7 31 .............................G CCGGTGGATCACGCTGTGACCCACCTGATCA 196313 30 93.3 31 ............................CT CATCCGGGGTGGACGAGGCTGTGACCTGCCC 196374 30 96.7 31 ............................A. GAGTTAGCGTCAAGCCCGTTTGGCATAGTGG 196435 30 100.0 31 .............................. GCCGGGAGGCGGCCAACGATCGGTGGAAGCG 196496 30 93.3 31 ............................AG CCTGCCGCTCGCGGTGCTGGTGTCGACCGGT 196557 30 96.7 31 ............................C. AGGACATCCGGTGCCGGGTGGCCGCCCCGTC 196618 30 96.7 31 .............................A AGAGGTGACCCGTGGACATCGCGAAAGGCCC 196679 30 93.3 31 ............................CA TGCGGGCGGCGGTCTCCAGCCGCTGCGGGTC 196740 30 93.3 31 ............................AT GTCTGGTGTTCAGACGGGAATGATGCTCACC 196801 30 90.0 0 ........................A.T..A | ========== ====== ====== ====== ============================== =============================== ================== 10 30 95.0 31 GTAGGCCCCGCGCACGCGGGGATGGACCGC # Left flank : GCCTTCACCGCGTCGATGAACGCCGACCACTGCGGACCGGTAGTGGTGAAGTAACCAGCCGCGCGATCCTTCGTGTCACGCACCGCAGCACCATCCGCGCCACGACCGACCTCGACGCAGTTGCTAACTCGGCCAGAACGGCTCGATTTCCGCCAGTTCGTAGGGTGCAGCTTCATCGCTTACCTCCCGGTATCCCGCCAACCCGGCCATGAACTCAACGGGCCACCCGGCCCTCACTTCACGAAAGGTAGCGCACCCATCGCTTTTCCGTGACTATCCACACCGCCATGCCCCTGAAGACAGCCAAAACCGCGACAGCGTTCCAACCGCACAACAGTCCACAAAGGTTATAACCTGACCCGAAGCGCAGCACGTTCCGAGATATTCCGCAGCAGCCCGACTGCACACGACCGAGCTTCCTCACTACGAACCCCAAGAGAGGCCAGAACGAAGTGGTTCTCACAGCGCTTTCCCGCCGTTAAAATCCCAGCGTAGTGAGT # Right flank : AAGGAACGGCCCACGGCAGGTATCGAAGATGCCCCCGAGCAGAGAGCTCGCTCATGAGTCGAGGCATCCGGCGAAGCCCTCGCGCTGCGGCAAGCCAGGAGGTGTTCTCGGAAAGCGACGCGAACAGCCGAAGAACCCCGCGACTAATCCATAGCTCACCATGAGCGCGCTGGAGGAAGTCGGGCAGTCACTGGCGACCACCATCACGAAAGCCACCGAAGCCCAGAAAGCGATCGTCGCGGCCGGAAACACCTGGAACGAACGCGGCCAGAAACTAACCGAACACCTCTCCGGCACCAACAACGCGGACGCCCAGCACCTCCTGGACCAGCACGAGACCACCGCCGAGGACACGCGGGAAGCATGGCGCAAAATCACACTGGCCCTCCGCGCCATCCAGCGGTACCGCACCAGCATCGAAGGGGAGCCGACAAGCGAACTCGGCGCTGCCCCGGGGGCGTCCGCCCCGCGCACTGGCATCAGCAATGCCACCGCGCCGG # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 198415-198627 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAT01000004.1 Actinopolyspora righensis strain DSM 45501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 198415 30 100.0 31 .............................. CTGATGGTTCGAAGGAAACGTGGCCCGAAAC 198476 30 93.3 31 ............................AC GCATTACCGGGGTAGCACGCAAGAGTGTTAT 198537 30 90.0 31 ................G...........CA CCAGCCCGGTCACCAGTAGGGCGCGGGTCAT 198598 30 90.0 0 .......................T.G...C | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTAGGCCCCGCGCACGCGGGGATGGACCGG # Left flank : CGAGGAAGGCGCGCGAACGCTCACTGTCGGCCTGCGCCGAACGACCGGAGCCCTGGCGTGGTTCGAGGACGACGCTTTCCTGGTGCCCACCGACGGCACCAACGACGAGCACGTGGATTACTTCTCCACGGAAGGACACCACTTCCCGATGGATTCCCGCACGGAGATACCACGTGAGAAGGCGCTGGCAGCGCTACGCGAGTTCGTCCAGCACGACGCGCTGCCCAACGGCATCGAGTGGGTCGAGCAGTGACGGATTGAGCGATCCCGCGCCGGTTACGAGTGACGTCGTGGTGATCCCCGTCGAGCGCCACGAATCCGGCACGGCGACACAATCCACGATGTCCGCAGGATGACTCGGTAAGCGACCTCGCTTCGAGCAGCGTGCCGAAGCGCCCCCACGACACGAGACCGAGCTCCGTCGCCACGAACGGCCAGAAAGGACACACGAAGTGGTTCTCACAGCGCGTTCAAGCCGCTAGAATCCCAGCGCAGTGAGT # Right flank : CCCGCATAAGCCCGCGAGCGCACCTCCACGCCGAGGTGAGCAGGCCGAACTCGCACGAAAAAGCGCCTCCGGAACGACTCCGGAGGCGCTGGACTTCACACTGCGGAAATCAGTCGAACTTCTCGGCCTTCACCGCGTCAATGAACGCCGACCACTGGGCATCAGTCGTAGTGAAGTACCCGGCCGAGCGATCCTTGGTGTCACGCACCGCCGCGCCGTCGTTGAAGCGGCCGACCTCGACACAGCTCGTCCGCTGATGCGAACGGCTGGACTTGCGCCAGCCTTCAGGATGTACCGTCATTGCTGTCATCCTCCATTTCGTCTGCACGGCTGGCGATGAACTCCACGGAGGCATCGGGGCTCATCGTCACCTCGTGCAGATTAGTAACCGCTTCCTGGTATGCGTGAGCGGTGCCCGGAGTGTGCAACGACACCGACGAGTGGTACTGCTCCATGTGCACGATCGGCGTAGCCTTCGGGAATTCGAACAGGATGAATGA # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //