Array 1 3994852-3996467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCKB010000001.1 Salmonella enterica subsp. enterica serovar Infantis isolate 2747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3994852 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3994914 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3994975 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3995036 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3995097 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 3995158 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 3995219 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 3995280 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 3995341 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 3995402 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 3995463 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 3995524 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3995585 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3995646 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3995707 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3995768 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3995829 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3995890 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 3995952 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 3996013 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 3996074 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 3996135 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 3996196 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 3996257 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 3996318 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 3996379 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 3996440 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4012750-4014647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCKB010000001.1 Salmonella enterica subsp. enterica serovar Infantis isolate 2747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 4012750 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 4012811 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 4012872 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 4012933 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 4012995 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 4013056 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 4013117 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 4013178 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 4013239 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 4013300 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 4013361 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 4013422 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 4013483 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 4013544 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 4013605 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 4013666 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 4013727 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 4013788 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 4013849 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 4013910 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 4013968 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 4014029 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 4014090 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 4014151 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 4014212 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 4014273 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 4014334 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 4014395 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 4014496 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 4014557 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4014618 29 93.1 0 A...........T................ | A [4014644] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //