Array 1 58500-58064 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KE993268.1 Bifidobacterium breve JCP7499 Scaffold96, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
     58499	    33	 100.0	    35	.................................	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT	
     58431	    33	 100.0	    33	.................................	CTTTCATCTGATTGGAACGACGCTTCCGATTCT  	
     58365	    33	  97.0	    35	.....................A...........	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT	
     58297	    33	 100.0	    33	.................................	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT  	
     58231	    33	  97.0	    34	...................A.............	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 	
     58164	    33	 100.0	    35	.................................	TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA	
     58096	    33	  97.0	     0	............T....................	|                                  	
==========	======	======	======	=================================	===================================	==================
         7	    33	  98.7	    34	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                   	       

# Left flank :   TCCGGCGATTTGGAACTGGTCGAAGGCGAGTACGAGCTCATCAACCGTGTGGAGGAGGAGAATGCCGCCGAGGCCGCTGCTTCGGTGTCCGCCGCTCTGCCGACCGGTGGCTTCGTGATCCTCGACACCGCTCTGGATGACGACCTGCTGGCTGAAGGCTACGCCCGCGACGCCATCCGCGTCGTGCAGGACGCCCGCAAGGCCGCCGATCTGGACATCGCCGATCGCATCTCCCTGGTGCTGACCGTGCCGGCTGTTGATGTGGCCAAGGTCGAGCAATTCCGCAATCTGATCGCCCATGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGCACCGAGCTGGCCGTTGAGGTCGCCAAGGCATGAGATCGCTGAATTGAGTTTGCTGAGTTGTCAATATTGAACGTTGGGACAGCCCAGTAAACTCGATACGCCAATTGATATGAGCTTGTCGTTGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTT
# Right flank :  CTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTGGTCGCTCCCCATCCGGGGAGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCTCAGATGCGGCGGACTCGACATCCGGCTACCGGAACCAGTCAGCTAACCCACGAAAACAGCAGAAGCCTCTAAAATACTCGGGCCATAGAGCGTTAGTCAGCTACTCCGGGGAACCGTACCAACTATTGCGACACGCCGTAAATCCCTTATAGGAGTAAGGCTTACATTCATTTTTGTTCAAAAGTTGCGGGGGGGGGGCTCGCTGTTATTCTAAATGAAAAGCTTTTCAAGCGAACAATCGCGAAGGAGCGAGTGAAAAGCTTTTCACTCTCGAAACATTAAGAGTCGTAGGCGTGGCGAAGCTATGCTCAAAACTCCGGTCCAAATAA

# Questionable array : NO	 Score: 9.20
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.40,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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