Array 1 19269-18771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZH01000044.1 Neisseria meningitidis strain MRSN431176 MRSN431176_contig00044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19268 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 19202 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 19136 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 19070 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 19004 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 18938 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 18872 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 18806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTGCGGAAAGCCTCCATGCTTTGCAGCACT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 1057-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZH01000045.1 Neisseria meningitidis strain MRSN431176 MRSN431176_contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1056 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 990 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 924 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 858 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 792 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 726 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 660 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 594 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 528 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 462 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 396 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 330 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 264 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 198 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 132 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : TCATCAAATCATCCGCCGCGATTCGATCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //