Array 1 90822-91339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMO01000087.1 Cronobacter malonaticus strain cro913W contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90822 29 100.0 32 ............................. ATATATCAGGATTCACAACTACTGGCTGAATA 90883 29 100.0 32 ............................. GTAGAACCGGGTGCCGCGCAGCCCGGCGACGT 90944 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 91005 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 91066 29 100.0 32 ............................. TCCACGAAACAGCAGATCGCCGACGATATCCG 91127 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 91188 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 91249 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 91310 29 93.1 0 ...........TT................ | G [91327] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTCACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58081-58743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMO01000003.1 Cronobacter malonaticus strain cro913W contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58081 28 100.0 32 ............................ GCCACCAGCGCCGGAGCCAGCCGCGAAACGGG 58141 28 100.0 32 ............................ TAACAAAGAAGAGCCGCCGCAAGAGATGCAGG 58201 28 100.0 32 ............................ TCAGCCACTACTGCTGGCGTGAGTTCGTCCGG 58261 28 100.0 32 ............................ CAGCGCGCGATAGAGAAAAAATCACTGCTAAA 58321 28 100.0 32 ............................ CCAACGATAGTTAGGATAAAGCCGAAGGTAGC 58381 28 75.0 3 .............TG..G.T....CGT. TCG TTGT [58401] Deletion [58412] 58416 28 100.0 32 ............................ TGCAAAGCCAGATTAAGGACACAATCAAAGGC 58476 28 100.0 32 ............................ CAGGCGCGAGCGCGTCAAAACGTGCTTGAAAC 58536 28 100.0 32 ............................ GTTTCTTTTGCGCGTTTGCAATTAGACGACGG 58596 28 100.0 33 ............................ CGGGCAGGATGCCGCGATTCAAAACCAGGTCTA 58657 28 100.0 33 ............................ ACAAAGGAAGAATACCGAATGGAACACGCAAAT 58718 26 89.3 0 ....................--..A... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 30 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGTATAGCGCCCGGACGTCCAAACCCTTTTTTATGCTCCGCTTATAAGTTGTTGATTTTTAATATATGTATTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCACTCTT # Right flank : ATACTAAAGCCTGAGGGAGGGCTTTTATTACCGTTATATAAGTAGCAACAAAATAAAAAGGAAAGAATTATCCATATAACTTATGGTTTCTGTCGTATGGGCTAGCTCGATAATTTTATGGCGTACATCAGTCAGGTGCTAATTGCCCGGTATATCGGCTATCACATAAAAGTATTAAATCAAGCGCCAATATTCGCAGGCTTGTTACTGGTACAACATCCTGCCAGGCTAATCAGTAATGATGTTTGTTTGCGGACGGGCGTGAAAATGGTCTGTAAAGTGGCATTTCGTGTCACAGGAAAATAAAGCACGCGAAATGAAAGGGATATCACGGCATATTAAGCGGGTTAATTATAGGCTGGTGTTTTATTTATATTTCAATGGAATATAAATACAGAAATCATCTAACGGAATTATGTAATGGACCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATTTGCAATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59304-59632 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMO01000003.1 Cronobacter malonaticus strain cro913W contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59304 28 82.1 32 C..T....GAA................. AGCGGTGCTTTCCAGATGTGGCGCGGCGTTGC 59364 28 100.0 32 ............................ CTCGCTCAGTGTTGTTTCGCGCTGCTGCGCGT 59424 28 100.0 32 ............................ CTGCCGTAGCGGGGTTTTTATTGTCTGTTATT 59484 28 100.0 32 ............................ GGCCTGGCTGGCGAAGGCGCGCGAATTTATGG 59544 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 59604 27 92.9 0 ........................-..T | T,G [59624,59627] ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAGAATTATCCATATAACTTATGGTTTCTGTCGTATGGGCTAGCTCGATAATTTTATGGCGTACATCAGTCAGGTGCTAATTGCCCGGTATATCGGCTATCACATAAAAGTATTAAATCAAGCGCCAATATTCGCAGGCTTGTTACTGGTACAACATCCTGCCAGGCTAATCAGTAATGATGTTTGTTTGCGGACGGGCGTGAAAATGGTCTGTAAAGTGGCATTTCGTGTCACAGGAAAATAAAGCACGCGAAATGAAAGGGATATCACGGCATATTAAGCGGGTTAATTATAGGCTGGTGTTTTATTTATATTTCAATGGAATATAAATACAGAAATCATCTAACGGAATTATGTAATGGACCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATTTGCAATACTGTCGGGTGCTGGTTAATGGCGGCCGGGTGGAGTATGTCACCGATGAAGGTAAAGAGTCG # Right flank : TCACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCTGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGATGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCCGGCAAAACCGCATTTGCCGGTAAAAATGTCACGACCTGGGGGTATAACGGTTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCAAACCGGTCAATATCAATATCCGCAATAACCTCGCTGAAGAGACAACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //