Array 1 1192-3319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTW010000077.1 Pseudomonas aeruginosa strain 8-58 BNLJNBMH_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1192 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 1252 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 1312 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 1372 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 1432 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 1492 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 1552 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 1612 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 1672 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 1732 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 1792 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 1852 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 1912 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 1972 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 2032 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 2092 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 2152 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 2212 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 2272 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 2332 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 2392 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 2452 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2512 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2572 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2632 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2692 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2752 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2812 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2872 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2932 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2992 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 3052 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 3112 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 3172 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 3232 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 3292 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13012-11844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTW010000077.1 Pseudomonas aeruginosa strain 8-58 BNLJNBMH_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13011 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 12951 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 12891 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 12831 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 12771 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 12711 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 12651 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 12591 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 12531 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 12471 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 12411 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 12351 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 12291 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 12231 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 12171 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 12111 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 12051 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 11991 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 11931 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 11871 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //