Array 1 83177-82111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPXF010000004.1 Azospirillum brasilense strain D7 c_000000000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83176 29 100.0 32 ............................. GACTCTGTCCTCGGAGAGACGGAGGACCGAAC 83115 29 100.0 32 ............................. AAACGCCTGCAATCGCGGCTGTGTCTCGCTTG 83054 29 100.0 32 ............................. TCGGACAGCCAGATCGTCCACGCCATCGAGAA 82993 29 100.0 32 ............................. AAACCGGACGCCCAATGAACCAGATGTTTGAG 82932 29 100.0 32 ............................. CACAACATCGAGACGGCGGGCACGACGGCCAA 82871 29 100.0 32 ............................. AAGGTTCCGAGCGCCGTGGACAGGCTGACCAC 82810 29 100.0 32 ............................. CCGGCCGACCATCAACACCGTGGCCACGAACT 82749 29 100.0 32 ............................. ATGCCATGGGCGGTGCCGTCGTCTGCGAAGAG 82688 29 100.0 32 ............................. TACTGGAGACGCCGGATGTAGCCATTGAGCGA 82627 29 96.6 32 ............................A GCCGATTTCGACGCCAAGCAACGGGAGGAAAA 82566 29 100.0 32 ............................. ACCACCACTCTCCCCACCGATGCCGAGCTAGA 82505 29 100.0 32 ............................. CAGGCCAGGAGCGCGACGTTGCGCGGGCGGGT 82444 29 96.6 32 ...........T................. CGCTTCAGTGCCTCCGTCAGGTACTTACCGTG 82383 29 100.0 32 ............................. TCCACCGCCTCGGGATCGTCGGACACCAGGAG 82322 29 100.0 32 ............................. ACGCGGAGCGCATCACCGCCCGGATTGCTGAA 82261 29 96.6 31 ............................T GCCGGCGACGGTGGAGATGTCCACCCTGAAC 82201 29 96.6 31 ...........G................. TTGTCAGGGACTGCATCGAAGAGTTTGTCCG G [82179] 82140 29 93.1 0 ....................C.......A | A [82136] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 CCCTTCCCCGCATGCGCGGGGGTGAACCG # Left flank : ATCGTGCCCCTCATCGAAGACGTGCTTTCCATCGACGGGGTTCAGCCTCCATCGCCGCCACCGGAGGCGTTGCCAATCGTGATCGCAAACAAGGAGCAGAGCGGCGATGCTGGTCATCGTTCTTGAAGCGGCTCCTCCGCGGTTGCGAGGTCGCCTGACACTTTGGCTGCTTGAAGTTCGTGCCGGTGTTTACGTCGGCCGGGCGTCGCCACGCCTGCGAGACCGCCTCTGGGATGAGATCGTGGCCAACATCGACGGCGGGAATGCGGTTCTCGTCGAGGCCAACTCCGGTCTCGAGGCTGGTTTCACATTTCGGACGGCTGGCCATGCCCGCCGCATGCCCGTTGACAGCGATGGCTTTTCCCTGGTGGCCTTTCATCCGGAAGAAGGGTGAGCAGGCTGGTTTTTGGACATTGTAAAGACTGCAGCAATTGCGGGAAGAAGTTGGTAGACTTCTCGCAAAGCGATTTCCCATGTTCTACCAGAGCCTTCCAGTCATA # Right flank : TAGGTCGGGGTGACCTATCCCAGGAAGCCGCGCCCATTCCCATCCTTGCTGGGTGAACCGACGCCACCCATACCAACGAAGCGCTCGACCACCCCAGCATTAAGATCATTATTCGAATTCGAGACGTCAATTACGTTTCACTTATTATTTTAAAATTCTGATCCGATCTATCGTTGATTGCAGTAAATCCCCACCGTACAGTCTTCTTATCCCTTTGTTAGATCTCAACCCGGCATCCGTTTCGCGATGCCGGGCACACCCCGTTCTTGCCCTCATGGGGAACCTGCATGTCCGTCTCCACCCAGGTGCGCGCTCCGCAGCTTGCCGACCTTACTGCCCAGATCGGCGCCGGTACGAAAATCTCCCCGCAATTCCTGATCGGCATCGCCAACCAGCACTTCGGCGGCACCATGGCCGCGGGCACCTACACGACGGCAGACGCCTACGATCTCGCGGAACAGGCGCTCAACAGGCTGATCCTGGAACGCCGGGTCATGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCATGCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92521-93283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPXF010000004.1 Azospirillum brasilense strain D7 c_000000000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92521 29 100.0 32 ............................. CGTCGGCACCAGCGATCATCGTGGCGACGACG 92582 29 100.0 32 ............................. TAATCGTCATCGACTGCAAAGTCCGTGTCGTA 92643 29 100.0 33 ............................. GACCCCGCGCCCCATCCAACAGGAATTTGCCGC 92705 29 100.0 32 ............................. GCCGGGGCGGTTGCGGTTGGGTTGGGGCAACC 92766 29 100.0 32 ............................. CAGTATTTCGGCCTCGTGCTATCCGGCGAGCC 92827 29 100.0 32 ............................. TCGCCAAGGGTGAACCCGCCCAGGTTTACGAA 92888 29 100.0 32 ............................. CCATACTTAGCGGCAAGGGCCAACTCCTCGGC 92949 29 100.0 32 ............................. CAAGAGTTGCTGTCCCTGCCCGGTGAGGGGAC 93010 29 100.0 33 ............................. ACGGCCTACAACGGCCGCGCCAGCCGCGCCACC 93072 29 100.0 32 ............................. TCGGGCATGGCGGGAGCCACCGCGGCCCTCAG 93133 29 100.0 32 ............................. ATGCCCTTGGTGCCGTCGTTCTTGCCGGCGCC 93194 29 96.6 32 ...........G................. GCCTTGAGCAGCGCCAGGGCGACGGCTTCAAC 93255 29 89.7 0 ..............T........T...T. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 CCTTTCCCCGCATGCGCGGGGGTGAACCG # Left flank : GGTCTTCCGGATGCATGCGGCTTTCGTCCCGACGGGTCACAGGGACGGTCCCGCATGGCCTTTCAGACGATGTTGTGGAGGCGATAGCCAGCCGAGCTGGCCATGCGGAGATCGTTCTCATTTCTCTCGATCCGACCCACGCTGTCTGGCGCGGGGGGCTCCAAAGCGGCGACAAGATTGTCCCGTTTACCGTCGATGGTTTCTACGGGCTTGAATGGAGATAACCTTGCTCATTGCCAGGAGGTGTTGGTGGAAAACGGTCGGCCGTTCATGGGCAACATCACAATGCATGAAGGAAGGGAATGGCGCGGCATGCCGTAGGAAGGAGGCATCAGCATCATTCGGATTGACAACCAGCCTTCCCGCTGGTGCTCTTCCCTCGAAAGTTGGCTGAATATGCGGCGTCTTGAGCATCGTGAAGACTGCATCGAATGCGGGAAGAAGTTGGTAGGCTTCCCGCAAAACGAATTTGCTCATGTTCGCAATGGCTTCCAGACATA # Right flank : GGCGCTCGACCAGTGCCAAGGCTGCGGCCTCCACGGCGGGATCGGGTGCGGCTCATGGTGCAATTCCGACGGCGGTGGCGAACGCGTCGTCAGGCACGTCAAAGAAGCCCTGCGCGCCGCGCCAAGGAACCGGCGCCGGAAGGGCGCGGACCTCTCCCAGCTCCCAAGCCCAGCGGCCCGGGGAGAAGTCGCCGAAGTGGCCCCATTCTGCCATCGGTCGAGATTCTGTCCGGTGAGCGGCAACCAGCACGGCGGTACCGAGCAGGCAGCCGCGCGGGATGTCGACCAGCTTCTCGAACCGCTGGCGCAGCGCGATGCGGAACGCTTCGTCACAGGCGAACTCAGGTCCCCCGGCGTCCCGATCGAGGATGTAGTCCTGCAAGCCTTTCAGATCCGCGGTGTTCTTCGCGGCGTGGATGCCGATGCGCTGGCCGATCAGCCGGGCCGGCGGCGCCCAATGGCGCGTCTCGTGCAGCTTGAAGGGGCGCCCGGTGGCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCCCCGCATGCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8845-8026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPXF010000086.1 Azospirillum brasilense strain D7 c_000000000087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================= ================== 8844 30 93.3 35 GT............................ GAAGCCCGCAAGGCCGCCGCTGCCCTGGAAGCATG 8779 30 100.0 35 .............................. ATCATCAGGGGTGCGGGATCAAGCTCCGCGAAATG 8714 30 100.0 33 .............................. GAGCCGTTGCGGTCGCTGGACGAGAAGGAGCAG 8651 30 96.7 35 .............A................ TTCTGGAAGCAGAACGCCCCGACCGCCGAGGAGCG 8586 29 96.7 38 ................-............. TGGGTCAAGAACAACGGCAGCACCCAGGCCGTGCCCGT 8519 30 86.7 35 .......TG...T.T............... TCCCCCATTCACGCTGCAGATCACCGATCGACGGG 8454 30 90.0 36 C....T............T........... GCGATATACGGAATATTCTCGCCTTGGGAGAAGTAT 8388 30 93.3 37 ..........C.T................. CGTGGATTCATGGTGTGGAACTCGGAGGTGGGCAGGG 8321 30 90.0 35 C.........C......T............ CGGGCTGGCAGCAGGGAGGTCATGCGGAAGGTCAG G [8315] 8255 30 100.0 34 .............................. CCCTCACTCCCCTTGTCAGAGGGACCGGACATGG 8191 30 90.0 105 ....T..........A..........G... TACCGCGACCCGGACCCGACCCGCCGCCGCATCGTCGCTCCCTGTGCGGGAGCGAGGGAGGATTGAAAAGGCACGGACACTTTCCTAAGCGGCTACGCCAAGCAT G [8182] 8055 30 86.7 0 .......T...TC................T | ========== ====== ====== ====== ============================== ========================================================================================================= ================== 12 30 93.6 42 TCGCCCCCATGCGGGGGCGTGGATTGAAAC # Left flank : GGCCACATGTTCTACAACGCCCCGTTGGGAATGCAGAACGGCATGACGGCCGACGACATGCAGCTCCTTTGGGAATCGATGATGCGGATGTTCACCCTGGACCACGCGGCTGGTCGAGCCATGATGCGGATGCGGGGCCTCTACGTTTGGTCCCACAAGGGCCGGTACGGCGACGCCCCGTTCGACCGTCTCTTCGACATGGTGAAGGTGGTGAAATCCGGGCCGGAGATCCCCCGGTCGTTCGAGGACTACCGGATCGAGGCAAGGGAACTCGAACCAAACGACCGCATCGTGTTCACTCGGCTGATCGGTTGACGAGCCCGTCTGCGAATGTCCAGCGGACACGGAATCCCTAGGGGGTTCACAGACGCCATAAGGTGTTGACGGAGTTTGTTCTTTGCTGTTCCCAGGACGCGGCCCTGTGGGGCTGCCGCCGATGAACGGCAGGGTTCGCGGAACACGGATCTTGGAATCAGTGAATACAGGGATTTACGCATAGG # Right flank : AGGTGGAAGTACGATTCGATGGCGATGCTGCCCCGGTATCGGGTGCATACGGCAGGGTACCAAAAAACCATCCCAAGAGCGGTACGATTGGGAGGCGTGTCGAATCGATTACATGGAGGCGTCGGCCTGCTGTCGGCCTCGGCAACTCACGTCATGAAGGATGGTGGGCCGCCCCACTTACGGATTGGACACAGCGTAGGGCATCAGCAACACCTAGAGTAGTCGCGACGCTGGCCTGCTGGTTTTCGGAGATGATGAGAAGAACCCCTGCCAGCACACTGGCTTGGCCTTTCAGTTGGCGGAACCAGCTTCGGCGATGTTTGGGGCACTGGATAGACTGTCGGTATCATCGGCAATGGGTATGGATCAAATCCCAGTAGACCTTACTTCTCTGAACCTGACCGATGGAGTGCCATAGGGGTCAAGTTGACAGTTCTGGAACTTGTGGTTCACTGGGTTCAGAGCCATGTGAAACCGAGGATGCCATGCTGGTCGGCTAT # Questionable array : NO Score: 7.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:-0.56, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCCCCCATGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //