Array 1 16433-16700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014024.2 Providencia stuartii strain FDAARGOS_145 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16433 28 100.0 32 ............................ TATATCGAAACCGGCTATGTAGTTATTGGATA 16493 28 100.0 32 ............................ ACCAATTAATAACATCCTGTTTATCAAAGTCA 16553 28 100.0 32 ............................ AGACCGTGAGCACTTAGCGAATCAGGATGATG 16613 28 100.0 32 ............................ CAGACAAGCGGCAATCTATTAATGCCATCTGG 16673 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAAGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCCCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTGTTACTTTTGAAGAGATTGTTTTATCCGTAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAACCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAACTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1447078-1446871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014024.2 Providencia stuartii strain FDAARGOS_145 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1447077 28 100.0 32 ............................ CTTTAAAGGAAATATAATCACATTCTTGTAAA 1447017 28 100.0 31 ............................ ATAACTAGTTGGCGCACTGTCATGCTGAATT 1446958 28 100.0 32 ............................ AGCTACTGATCCGACATGATAATGAGCGCATA 1446898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : TTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGAAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAGGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1468399-1468011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014024.2 Providencia stuartii strain FDAARGOS_145 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1468398 28 100.0 32 ............................ ACCGAAGCTGGACAGCGAATGGAGTCTAGAAT 1468338 28 100.0 32 ............................ TAACACTTGCTGTGTCTACTGAGAGAAAAAGT 1468278 28 100.0 32 ............................ ATGCGGTAGGCTTCCTCAGCAATTTCATTCAT 1468218 28 100.0 32 ............................ GCCATGTTGACCATTCAGGTTCACTAATTGTG 1468158 28 100.0 32 ............................ TCTGGAAAATCAGAAAATGCCAGAAGTAACTG 1468098 28 100.0 32 ............................ AATGACAATGCGCTCAATTCGCCAGCGTAATC 1468038 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGTTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAATGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAGTCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : CAGATAGCAGTGCGTGGTTTCGTTAAATTCCTCGCTTACTACACCGATAACGACGATGCCCTCCAATCCGCTGCGGATGTTTATCTCGAGGAGATAGCACAGAAACGTGCTCACAATATTTCAGCGACAAAATCCTTTGATGCCTTTCGCTACTGGGTGGTTGAGCAATCTGGCCATTATGAAACGTTCGAAATGCCTGACGGCAGCCTGAGGCGTGTCGCCAAATCAATTAGCTTTGCCAAAATGGACGACCTAGCCTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCTACTCAAGAAGCTGCTGAAAATGCGGCGGCCCAGTTATTAGATTTTACCTAGAGGCAAGACCAATGACCAAAAAATCAAAGACCAAAGAAGAGAAACAGTGGTTATCAGATGTAGCAGAACTCGGCTGTATTTGTTGTAGAAACATGGGGTATGGGGCAACTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1542143-1541214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014024.2 Providencia stuartii strain FDAARGOS_145 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1542142 28 100.0 32 ............................ TTTTTAGCACCGGGTGCTTGTCTGGCTTGTTT 1542082 28 100.0 32 ............................ AATGAGAATGGCCGCATCAGAACGTAAAGCAA 1542022 28 100.0 32 ............................ AACAAAGGCCTCCCAATCGTCCAGTAACATAA 1541962 28 100.0 33 ............................ AGTTTAAGAATAGCCTTTCCTGCTGTGCTGGAA 1541901 28 100.0 32 ............................ CACAGCGCCAAATCACAGTAGGTTATAGATTG 1541841 28 100.0 32 ............................ CACAGCGCAGGCCATCCGAGCAGTCCGCCAAA 1541781 28 100.0 32 ............................ CTAACGCTGTTAATGTCAGCATGAAACGCATT 1541721 28 100.0 32 ............................ TACATCATAGAACATGCAGAACTACTTGCTGA 1541661 28 100.0 32 ............................ GATTGCAACTAGAAGTCTTGCACAGCGTTGTA 1541601 28 96.4 32 ...........T................ GAGTGGTTATGACGGGATTGAGCTGGAGTATG 1541541 28 96.4 32 ...........T................ AATGTACGGCGTTCCATATTTATCAACCATGT 1541481 28 96.4 32 ...........T................ CAATTAGTTCCTTGCATCCTGCCCTCCAGATT 1541421 28 96.4 32 ...........T................ AATGTACGGCGTTCCATATTTATCAACCATGT 1541361 28 96.4 32 ...........T................ CAATTAGTTCCTTGCATCCTGCCCTCCAGATT 1541301 28 96.4 32 ...........T................ AAAGAAGTTGGCTTTAGTTGGTTGCCACCACT 1541241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAATTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AATGAAACATCAACTTGATTTTATATATTTTTCAAGGTGACCATTTTGGCTTGTTTTATAAAATACAAAGGTCGCTTCTAATTCTTCATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTATGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTTTATTATCAACGATAGCCCTTGGTCAACCTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1551514-1551109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014024.2 Providencia stuartii strain FDAARGOS_145 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 1551513 28 100.0 32 ............................ TGTTAATGATTTATATCCATCAGAATAAAAAG 1551453 28 100.0 32 ............................ GCTTGCGGACCTCTGAAGCAAGTATTTTACGG 1551393 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 1551333 28 100.0 32 ............................ TGCAAACATGGCATTTATCATTGTCATCTTTT 1551273 28 100.0 32 ............................ CAGAGCAAGCGAAAGCTAAAGAAGTTTATGAC 1551213 28 96.4 49 ..............G............. TAAGACGCGGGTTCAACTCCCGCCAGCGCAGCAATAAAGGGAAAATAAA 1551136 28 67.9 0 AC....ATTG.......A..A.....C. | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 94.9 35 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : TAAGGCCAACGGCTTAGAAGGCCGTAGGTAACATACATAAACGTATAGGCAGTTATCCATTTATTAATATAGATTAAATAAACAAGTATTAACATGTACGTTTAAATACAATTAATAAGTTATTTTTGATAAAACGCTTTGCGATCAGCTTCCCAAAATCACCATGTACTCTTTACAAACAATGAATAGCTATAGACAACACTTAAGTTAAACTGTATTTAAATAGTCATATGATTTAACCAAGTCAATGGAAGGCTAATTCAACATGGATGACTTTTCTCCCGCTGATTTAAAAACTATCCTTCATTCCAAGCGCGCTAATATGTACTATTTAGAGTATTGCCGCGTTATGCAAAAAGATGGTCGAGTTCTCTACTTCACCGAAGCGAAAAATGAAAACCTCTATTTCAATATTCCCATTGCGAATACAACAGTTTTGCTATTAGGCACTGGCACCTCTATTACTCAAGCTGCGATGAGAATGCTTTCACAGGCTGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //