Array 1 4084-10875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000003.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000010_quiver_quiver.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4084 37 100.0 34 ..................................... CTAAATAGTCGTATTGTCTTTTAATATGTTCGAA 4155 37 100.0 37 ..................................... ACAGCGTAAAGAGTGCGCTAGTGATTAGCGCACTCTA 4229 37 100.0 36 ..................................... TGTCAATAAATTCACTAACATCTTTGTCATTTTCAT 4302 37 100.0 33 ..................................... AAAGCGTCATTGTCAATAAATTCACTAACGTCT 4372 37 100.0 34 ..................................... TCACCTAAAGTTTCAATGTGAAATAACATGATAG 4443 37 100.0 34 ..................................... GAGTGCGTCAGATGCGAGCTTTTGGGCTTTGTGA 4514 37 100.0 35 ..................................... TTTCGATCGTTGCGTTGTATTTGTTCATATCTTTA 4586 37 100.0 35 ..................................... AAAATCTCCATAGATGATCCCTCTCAAAAGTAAGT 4658 37 100.0 35 ..................................... AGAATGTGGCTCATCAATTTTTGATTCATGTATTC 4730 37 100.0 35 ..................................... ACAATTTTTTATAAAAGAATTTAAGGTTCAAATCC 4802 37 100.0 34 ..................................... TTCGTTTAGCTTCTTCTTCTTTCTCTAACATGAC 4873 37 100.0 35 ..................................... TAAGATAGTCGGTTTTAAGTTTAGTTCAATAATCC 4945 37 100.0 34 ..................................... TGAAATTCTTCTAACCTTTTCGCCGTGACTCTAG 5016 37 100.0 34 ..................................... TTCTTGAAGCTTAGCCGTTCCATAGAGCCTGAGA 5087 37 100.0 35 ..................................... GCTCAAGCGCTCCGAAGAGCCATTTAGCCAAATGT 5159 37 100.0 34 ..................................... TCCTTTTCCACTCTGTAGTCATTTGTAGAGCCTT 5230 37 100.0 34 ..................................... AACTGCCATTAGCTTGAGTGATGTTCTCAAACCC 5301 37 100.0 34 ..................................... TTTTAGTTCCTCCCATAATTTTTCCCATGACCTA 5372 37 100.0 34 ..................................... CGTCCATGTACACCGTAGTGTCGGTGTACCGAAC 5443 37 100.0 34 ..................................... AATCATTTGGGCTGCCTTCTACGTTGAAGGGTAT 5514 37 100.0 35 ..................................... GATTGAATCAGCTCTACATTCTGCGTTACATCGTT 5586 37 100.0 34 ..................................... CATTGTCTATAGTTCTAATTACTGAGAATCTTTA 5657 37 97.3 35 ...............T..................... AGTTTATCAGTTAATGAATGGATAAGGGCAATTAA 5729 37 100.0 34 ..................................... TGCTATGAACCAGTGTTACGTTGGATAAGAAATC 5800 37 100.0 31 ..................................... AGCACATCATTGTAGACTTTATGCGATAGGA 5868 37 100.0 33 ..................................... CCCTGCAGCATAGAGACTTTGATATTTCCGTTT 5938 37 100.0 34 ..................................... TATGGGCACTTCATCTATGCAGCGGAAAAACTTC 6009 37 100.0 35 ..................................... ATAGGTTGATAAGGCAAAGTCTTTGAAGCCAGCTT 6081 37 100.0 34 ..................................... TCGAACAAACCTGTAATACAGGTTTCCTTGATGG 6152 37 100.0 34 ..................................... AGTCTTTAGATATCCTAACTGCTGCTCACCTTGA 6223 37 100.0 33 ..................................... AAATCTCTGCTCGATTAGTAAGTTAGCCTTTAC 6293 37 100.0 34 ..................................... CTACATTGAAGGTTAGGCCCTCCTGCAGGGCGTT 6364 37 100.0 34 ..................................... TCAGTTAGTGTGATCATAATACCTCTAATTAAAC 6435 37 100.0 35 ..................................... CCTTGAAATTGCGACCATAGTCTTTCCGCTACATA 6507 37 100.0 34 ..................................... TTTCATGTTCATAATAAGCTTCTCCTATTGGCAA 6578 37 100.0 33 ..................................... AGTAATTCGGCGCGCAATGCGGATTCAGCGACT 6648 37 100.0 34 ..................................... TTAATCACGTCGATGAGGTCTTCATCGCCCAGGC 6719 37 100.0 32 ..................................... TCTAGTTACTGAGAATCTTTTAGTATAGTATA 6788 37 100.0 35 ..................................... CTTTATGATGAGCGTTGACTTATCACTATCATAAA 6860 37 100.0 34 ..................................... CATTCTCATCATATATATACAGCTCTTTATTAAG 6931 37 100.0 35 ..................................... TTGATTTGACATTACACACAATGCGTCTACGCTCA 7003 37 100.0 35 ..................................... CAAGCGATTTTTGACATTCTTGCGCGCTTGTTCAG 7075 37 100.0 31 ..................................... GCCACCTATTAGTTAGTTAGTTCAAGAATCC 7143 37 100.0 33 ..................................... ACGGTTGTATCGTTATAACGGACGTGCCGATAA 7213 37 100.0 35 ..................................... GGGTTATCAACCCCCCCTATCAGCCATTACGTTAG 7285 37 100.0 33 ..................................... CCCCTGCCCTTTACTAAATTGGCGGCAGAGTTC 7355 37 100.0 34 ..................................... TCATTTTTCTTACTCCAATTAGAATGTTATTCAA 7426 37 100.0 33 ..................................... GTAGTCCCTGAAACCGGGTTCCATCGATTCAAC 7496 37 100.0 35 ..................................... ACTTCTCAGACCAACAAAAGTTAGCTTCTCCGCAA 7568 37 100.0 35 ..................................... GCAGGGTTACGATGGTATTTTTGTTGATAGCCATT 7640 37 100.0 34 ..................................... GAGTACCTTACTGGGTTACCAGTAACTAGTTCAT 7711 37 100.0 32 ..................................... ATGTCTATAAGACATGTTTCCTTGATAGCCTA 7780 37 100.0 36 ..................................... CTTGACGTACCGGTAAGACATGTTGCCCTGGTAGCC 7853 37 100.0 34 ..................................... CTCGATCAAGAGTAACTCAACACCATAGCCCACG 7924 37 100.0 34 ..................................... CTAAAGATTCGTCACAATACACCGTTGTATCGGT 7995 37 100.0 34 ..................................... GCCAGCGCGTTGAACCGTTTCCAGCTCATGCAAT 8066 36 97.3 33 ....................-................ GACGATGGATGGGATATTGGTATCGATCAGATC 8135 37 100.0 34 ..................................... ATATCAGTCAATGCATTGTCTACCATGTTTAAAA 8206 36 97.3 35 ....................-................ CCGGACAAGTCTGTAGGACATGTTGCCTTGATGTC 8277 36 97.3 32 ..............-...................... AATATTGGTGTCGAGTAGGTCGATTTTTTTAC 8345 37 100.0 34 ..................................... GAACGAATCTGTAGTACATGTTTCCCTGGTGACC 8416 37 100.0 34 ..................................... CCCGGTAACTTGGTAGTGTTCTCTTTGAATGTTG 8487 36 97.3 33 ....................-................ CCGGTAACTTGGTAGTGTTCTCTTTGAATGTTG 8556 37 100.0 34 ..................................... TCCTCATGTTTATCAATATACGCCAGGGCCTCCT 8627 37 100.0 35 ..................................... GGACGTGCCGAACGTACATGTTTCCCTGGTAGCCT 8699 36 97.3 34 ............................-........ TCATACGGTGAGGTGTATGGTTCAGCCAGATATG 8769 37 100.0 35 ..................................... TATCAGCCATCGCATTGATAATCATGTTCAAAACT 8841 37 100.0 34 ..................................... CAACAACGGCGGGAATATTAGTGTCTACAAGGTC 8912 37 100.0 34 ..................................... AACTCCTTATTTGCGAATAATACATTCTCCTCCT 8983 37 100.0 36 ..................................... ACGTGTCGTGAGGAACAAGTCGCCCGACATTATACA 9056 37 100.0 35 ..................................... TACGGTGAGGTGCACCATTCAGCCAGATGTACACG 9128 37 100.0 35 ..................................... CTTTATCAAACCAGTCAGCATGTCCCATTTATACC 9200 37 100.0 35 ..................................... TTTTCAATGAAGTCCAGAGCCTCCTCCTCGGTGGC 9272 37 100.0 35 ..................................... GGCCGGCAACTTGGTAGTGGCCTCTTTGATTATTG 9344 37 100.0 34 ..................................... CTAGGCTAGCTAGGCTAGTCAATGGAGGAGTAGT 9415 37 100.0 35 ..................................... CTATAATCGTTTGAGCTGCCCTCGATGTTGAAGGT 9487 37 100.0 32 ..................................... TACACCATCTGGAGCAACTGCTCCGAGCTGTA 9556 37 100.0 32 ..................................... AGTTGTTTTACTTTAGTTACCGCTTGCTTAAG 9625 37 100.0 36 ..................................... CTAGCTAGTCAATGGAGGAGTAGAACTCCTCCAAGT 9698 37 100.0 34 ..................................... AAGTACTCATCGTAGTACTTCTCCTCGTTCTGCT 9769 37 100.0 35 ..................................... TTACGAATCTGTAATACATGTTGCCCTGGTACCCG 9841 37 100.0 34 ..................................... TACTGGCTACCAGTACTAGTTCATCGGAATAGCC 9912 37 100.0 36 ..................................... TTGTATAATCGGGAGAGAATATGAGCATATTTCATT 9985 37 100.0 37 ..................................... TGTAAACAATACTTCTAACATGATCTTTCTCCTGAAA 10059 37 100.0 34 ..................................... TCGCAGTACACGGTGGTGTCCGTGTACTTTACGA 10130 37 100.0 33 ..................................... ACGAACCGGTAGTACAGGTTTCCCTGATAGCCA 10200 37 100.0 35 ..................................... TAAGTTCATCGGACTAGCCCATCCTTGGGCTATTC 10272 37 100.0 33 ..................................... AGGTTTCCCTGATAGCCAGCCACCTGGTAGTGG 10342 37 100.0 35 ..................................... TGTACTTAACGTACCGGTAGTACATGTTCCCTTGG 10414 37 100.0 35 ..................................... TGTACTTAACGTACCGGTAGTACATGTTCCCTTGG 10486 37 100.0 33 ..................................... ATGTTCCCTTGGCAGCCTGCTACCTGGTAGTGG 10556 37 100.0 34 ..................................... GGAGCTCCTCCTGTTTCATCACGTCGTTAAAGAC 10627 37 100.0 34 ..................................... GTGTACCTTCATGTTATCCTCCTAAGATTGCTCT 10698 37 100.0 33 ..................................... CACATAGGTCGGACACGCTTCGAGGAACTGATC 10768 37 100.0 34 ..................................... ATTATTGTTGCTCATTGTTGTACTCCAATTATAA 10839 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 96 37 99.8 34 ATTTGAATAACAGACCTTATAAAGAAGGGATTAAGAC # Left flank : AGGCCCGCTTTACCGCCAACGGCGGCTGGCTGGAAATGTTCGCCTATGCGGAATGCTTGGGGCTGAAGAAAGCTTCGGGCATCCAGGATATTGCCTGTAACATTACGATAAGCCGGCACCCTGCCGGAAAACAGCCGTAAAGAACGAAATCGACATCGGCCTGATCAAAGCTAACCGGCTGCATTTAATCGAATGCAAAACCAAAAGCTATAGGGACTCGACGCAAGGCGCGGATGTATTGTATAAACTCGACAGCCTGCGAGATTTGATGGGCGGCCTGCAGGGCAAGGCCATGCTGATCAGTTTCAATACGCTGGACAAAAGCAGCCGTGCCCGTGCAAAAGAACTGAACATTACGCTTTGTAGTCTTTCCGAGCTGAAGAATTTACAGCAGCAACTGAAAAAATGGCTCAGTCCCAACGGTTAACTTTTCAAATATGAAAAATCTTGGCAACCCTATCTGTAACCATCTGAAAAATAGAGGAGAGTATGAACGAGCT # Right flank : CCTAGTTTTTGAATTGTACCTTTTTATGCGCCGCAGCTTTTCCCTTGTAAACCACAGCTTCTAAATCGGTACGCTCTTCCTCCGTGAGTCGCACTCTGTATTGCTTAGCCATATCGCCACTCTCATCAGGGAAATTCCTCGATAGGGGACTACTGATCCGACATTTCAAGATTGACTGAGTACTAGGCTAAATTGAGGATTGCCGAGATCATTTCCGGGAATTGTCGCTAATGCCCGATAAAGGCTAAAATAGTGGGCTAAATCCCTTCAATTCACAATGGAATTCAATGACAATTACTACACGTTTTGCTCCGAGCCCCACCGGGTACTTGCATATCGGCGGTGCCCGTACCGCGCTTTTTTCCTGGCTTTACGCCGCAAGCATGGCGGCGACTTATCTTGCGCATCGAAGATACGGACCTCGAACGTTCCACGCAGGAATCGTCAATGCGATTCTCGAAGGCATGACTTGGCTCGGCCTTGAATACGACAAAGGACCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATAACAGACCTTATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 140288-143789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 140288 36 100.0 36 .................................... CTGCAATCGGACCCGGCCGTCTACACCGATCATTTT 140360 36 100.0 36 .................................... TGAGGCATCAGTTCCTATAAACGGGAGCAACTGCTT 140432 36 100.0 35 .................................... GATCAGGCGAGCGTCGGTATCGCGGCGCGGGGCAA 140503 36 100.0 37 .................................... CTTGCGTGGCATTCAAGTCTACCAAGTACTCTTCGAC 140576 36 100.0 35 .................................... CTGTTGAAAGTAAACGCGGTAGCCCGGCCCGTAAT 140647 36 100.0 36 .................................... ATCGAGCCGTCCTGTAATGTATACGGCTGCATATCC 140719 36 100.0 36 .................................... ACTGCCCATGATAGCAGGTTCGATTTTTCATCGCGG 140791 36 100.0 36 .................................... AGAAGACGTCGCCGAGGAAATCGAGGAGTCGAAATA 140863 36 100.0 36 .................................... CAAGACCGAATGGATCAAATTGACCAGCTTATGGCT 140935 36 97.2 35 ...........................G........ AGCTTACCATCACGGCAATTTCCACTTCACCGGCT 141006 36 100.0 36 .................................... GTAGATATTGGCTAAGCTGAAGGTCAACCATCATTT 141078 36 100.0 38 .................................... TTTTTCAAGGAAGGAAGAAAAAAAAGAATGTCCAGAAT 141152 36 100.0 37 .................................... GTCGAACGTACATTTGATCGAATCCGTGTCAGTCAGC 141225 36 100.0 37 .................................... CTAGACTTAAAGCAATGATGAAAATTACCCACCTATA 141298 36 100.0 36 .................................... TGGCGTTGAGCGATAACGTAGGCAATTTGGCGCATC 141370 36 100.0 37 .................................... GGCAGGCCGACATTTCGCCGGTATTCGTCATCGACTC 141443 36 100.0 36 .................................... CGTGCTGGGCCAGTGTAAAGGCACTAAAATCATCGT 141515 36 100.0 37 .................................... AACGGAACGCGATCTTTTTCCGGTAGTTTCTTGTTGT 141588 36 100.0 35 .................................... CGTTTCTTCCGCCACTCGAAGCTGGCTGCTGCCGA 141659 36 100.0 36 .................................... TTTCGTTATCGCATTAAGTCTAGCCCTGAGTGTGTG 141731 36 100.0 35 .................................... CCAAATTATTCGCATTGTCGGCAACGGTTGAAGAT 141802 36 100.0 37 .................................... ATTCTCGAATAAAAATCTAAACATAAATCTACCCCTA 141875 36 100.0 36 .................................... GTATCTGGAACTGGTCAATGACTACTCCACCCTGGA 141947 36 100.0 35 .................................... CTCGGGAGCGTCAAACTCGACGACCACCACGCCCG 142018 36 100.0 36 .................................... TGCCGAGTCCAGGTAGCAATCTGATTCGCGTCACAA 142090 36 100.0 38 .................................... GTAATCTGAGTGCTAGGCATAGGTCAGCCTCACATGAG 142164 36 100.0 37 .................................... CTTGATCCTCAAACAGGCAGGCCGCTTAGTTATATGC 142237 36 100.0 36 .................................... TGCCGTACAGCCAGGGAGGGTTATGCAAGGCCTTAT 142309 36 100.0 36 .................................... GGTTAAATCGGCACTGAAATTTATCACCGGTTTTGT 142381 36 100.0 36 .................................... CGGCGGGATATTGATGCTTGGCTCAAACGCGAACTC 142453 36 100.0 36 .................................... GGGCAAGCGGCAGATGATGATGACCGAGGCCGAGTT 142525 36 100.0 36 .................................... GACGATGAGCGACTTCGCCGCGGCCTTGGCCGGCAT 142597 36 100.0 36 .................................... GAGAAAGGGCTGGTATTTACCAGCGACGCGGCGCAC 142669 36 100.0 37 .................................... GACGCCGTGCAAGCGTTGGCTGGCAGCATTAATCCTT 142742 35 97.2 37 ............-....................... GATAATCATCAATGCAGCAGATTACTGCTGCAGGCGA 142814 36 100.0 37 .................................... TCAGTTTCTGAAAATGCCCAGTTAATTCGGGCTGGAC 142887 36 100.0 36 .................................... ATAGTCAGCGATCATAACGCCCGCCTCATAGCCTTG 142959 36 100.0 34 .................................... GCAAAATGCGAAGACGGCATCCGGCTGCCCTTGC 143029 36 100.0 36 .................................... GATTTTTTCCACGTATTTTTTTACGGCGGCGAAACT 143101 36 100.0 39 .................................... ACTATTTATGACGCCAGAAAAATGTGGGGAATTTGATGC 143176 36 100.0 36 .................................... GGATGCACCGACGAAAATTATCCAATGGTTTACATT 143248 36 100.0 36 .................................... ACGAACTGCGCGGCAATCATACCGCGCAAATCGCCT 143320 36 100.0 35 .................................... TCCACGAAAACGCCGTTGATCTCTCTAACTATCGG 143391 36 100.0 36 .................................... GGCGGAAAATGCCTGCTAACTGATACCGATTCGATA 143463 36 100.0 36 .................................... CCAGCAATAGCACTCGAATTCGCCGACGGCCCATGT 143535 36 100.0 37 .................................... AAGATAAATGGTAAAAATTAGCCAAAAAAAGCACCTA 143608 36 100.0 38 .................................... CGGCAATCAATCGGATTCCGTATCCATCCAGCCATACG 143682 36 100.0 36 .................................... GCGGGCCGGGATGCTGCCATTCGGGCATCCAATAAG 143754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 49 36 99.9 36 GCTTCAATGAGGCCCCGGCACGAGGCCAGGGAAAAC # Left flank : TGCAGTTCCAGATAGACGTAGCGGGTAGCACGGTCGATGGCGACGAACAGGTACCTCTTGTCTTTGCCCAAGTTGATTACCGTGGCGTTGCAGGCAACGGTGCAGGTTGGAGCGGGTCAGCGCCGGTATCTGTGGCCGTAACAGATCGTACAGGTCATCCAAGGGCAACAAGGTCTTAGCCGGGTTTCGACGATGACGGCTTCGTTCACCGCGGTCAGCACGCTGCCTTGGCCGGGCTTGCTGCTGCACTTGAGGTCTTCGACCGACGCCCGCTTCCGCCACTTCTGGACAGTTTTGGGGTTGATCCCGTAGCGCTTGGCGAGTTTGACGAGGCTCTCTTGAGCGTCTTGAATTTTTTCTCGGATCGCGTGCGTGGTCGTGGCTGTTCCGTGGAGTACTTGTCCCATCGCTTTTCCTCTTTCAGTTGGGAATAGGTTACACCATTTATGTATGGGACTAAACAGCTAATTAGCCATCCTATGATGCCGCAACTCATAACC # Right flank : CGCTTGGTTTGATCGTAAGCGTCCATCCGAGCCACCTATAAAATAGTTTTCGTCTGCGGCATCCTGTGATTTTTTTGATCAGGAGTTTTAGCATGGCCATCACAGCGAAATGGCGTCAGCATATCGAAGCGTGGCAACGCAGTGGTTTGTCGCAAGCCGCGTATTGCGCAGCACAGCAACTCAATGTCCGTACGTTCACAGCACGGCTGAGCGATTATCGCAAATTACCCAAGCAGGATTCGACGGCCTTGATACCGGTGCAGATTCAACCGGCTGTCACTGAGGTCATTGTCTTTACCCATGCTCAGGGCCATCGCCTGGAACTGCCGGCTTCGATGCCGGCGAGTTGGCTCGCGGAGCTGTTGCGATGCCTGGCCTGATCGCGAGCCCGGCACAGATTTGGCTGGCGGTGGCGCCGGTCGACATGCGGCGCGGCCTGGATGGCTTAACCACGATCGTGCAGCAGAGCCTGGGTCATTCGCCGTGTGCTGGGTCGGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCACGAGGCCAGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 151511-146293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 151510 36 100.0 38 .................................... AAGGATTTCTCAAACATTATCAAAAATAGTCTCGTCGT 151436 36 100.0 37 .................................... GCCTTCCAGTTCGCGATGATGTCGCCGATCAGCTTGT 151363 36 100.0 38 .................................... CCGTTATTGCCGGCGCTGTCGGTCGGGACCGTATGCGT 151289 36 100.0 37 .................................... AATTTCCGCAGGGTTAACGCTCAACAACCCCCGCCGT 151216 36 100.0 36 .................................... TCATCATGTAAGCATGTTTCATGCGAACCGATTGGG 151144 36 100.0 38 .................................... ATATTCTTTTTTGACAAATGCGTTAAGCGCTTCAATGT 151070 36 100.0 40 .................................... AGCGTCAGTGTATTCAACGGGCTCAAAATTGAGCCGGTGT 150994 36 100.0 37 .................................... GTCACAAGCTCCGACTTCTAACAGACGATAAGCCCGT 150921 36 100.0 37 .................................... AAACTATATTTTAAAGATGGTGTATTAGTTTCAGAGT 150848 36 100.0 39 .................................... GCATCCTACTAAGCCAGAAATAACGGATGTTTATGGGGT 150773 36 100.0 37 .................................... AGGTTGGCAGGGTACGAGGCTTATTCGTGCGACATGG 150700 36 100.0 38 .................................... CAGCCGCCGAAGCGCGTTGCGTTGAACCCTGCGAACGT 150626 36 100.0 37 .................................... TACAAACATGGCTTAGCCTCCTAATTTTTCCTTGCGT 150553 36 100.0 39 .................................... GAAAGGTAGATAAGGAAATCTTTCGACTTTCAGCAGAGT 150478 36 100.0 38 .................................... AATCGTCTGGCCTTTGTAGGTCGCCGTCCAGGTGATGT 150404 36 100.0 37 .................................... CCGGGCAGTATGGGGAGAGTCTCCTGCTCGGGGGACT 150331 36 100.0 36 .................................... AGTGTCAGCGGTAACTTCAACATCGAAACCGATAAC 150259 36 100.0 39 .................................... TCGTTTCAGTTGAGTTGCTTCGCTTATAAATCCATACGT 150184 36 100.0 39 .................................... GAAGGCGGCTGTGGATAGCGGAGACCCGCTTGCCGTAGT 150109 36 100.0 38 .................................... ACGATGCTGTCGAAGGCCGAGCAGCATCGCGAGACCGT 150035 36 100.0 36 .................................... AATCAACAACCAAGTTTGGCCGCATCGTTCAAAAGC 149963 36 100.0 36 .................................... AACAGCTCAGTAACGTATCCAACTTCAATGATTGAG 149891 36 100.0 36 .................................... CATGACGTCGCCAGGTTGTACCACGTGGTAACCTTT 149819 36 100.0 39 .................................... AACGCTGCGTTCAAGCGCGAGACCTTATCCGCATCGGAG 149744 36 100.0 37 .................................... TGTATTACCGGCTGTGCTGCCTCAAGGCCGAGTCGCG 149671 36 100.0 37 .................................... GAATGCAGCCCAATCAGGGTTTGATTTTGATTGTCAA 149598 36 100.0 37 .................................... AAATTGTTTATCAGCTATAGCGCACCGCGGGCCACAA 149525 36 100.0 37 .................................... TCTTAGCCGCTTTCTACCCACCGAGACTGACGCATGA 149452 36 100.0 38 .................................... TAAGCGTCTACGAATCGGTCAAGCATCCTCTTCACGGG 149378 36 100.0 37 .................................... TCTATGCGGGAACACGTCCCTGTGAGGTCAGCCCTAA 149305 36 100.0 38 .................................... TTGAGCTGTCGCCGCAACACATCGAAGGTGTAGCCCGC 149231 36 100.0 36 .................................... AGCTTTTACCCATTCGTTTTGAAAATGTTCTCTGGA 149159 36 100.0 37 .................................... GCAGCAAATCGGCGCACAACGTCGGGCCGCAGGAAGC 149086 36 100.0 36 .................................... CCATTGAGCCTGTTGCTGTTTAGCCTGGTTTTCTAT 149014 36 100.0 37 .................................... CGCGCTCTGGTCGGCGGTTTGTCGGCCTTGGCGCTGT 148941 36 100.0 38 .................................... ACCGCTACAAGTGCCTGATGGCCTACCATCAGCGCGAG 148867 36 100.0 37 .................................... CAGGTTGATGCGGTCCTTAATGGCATTATTATTCAAT 148794 36 100.0 36 .................................... GATCGACAGGATTTCGGCCGGTGTCAGAGATACAAC 148722 36 100.0 37 .................................... ATCTGAGTAAGTACAGCATTAATTGGCATGGAAGTAG 148649 36 100.0 36 .................................... AATGACTAAAGTAGACGCAACGTTGCCCGTATTTTT 148577 36 100.0 36 .................................... CCGGCCTTTCCGCGGTATCAAAACTCACCGGCGTCA 148505 36 100.0 36 .................................... CAGAGAGTGAAATCGAAATCCACCTCACTCAATTGA 148433 36 100.0 37 .................................... CTGCAAACGCAGGGGATCGATAGAGAGTGCTTTATCG 148360 36 100.0 37 .................................... AGTAATGCCTTATAGAGATTATCAATAAAAGAAACGC 148287 36 100.0 38 .................................... TCGTTCGCACCATCTACGGTTAGTAGTTCCTTTACATC 148213 36 100.0 37 .................................... AAACAGCACTTGGACCGGGAGAAGGATCAGGAAGATA 148140 36 100.0 37 .................................... GATGAACGACGTTGTTTCAGGTTCGACGACGCGCCTT 148067 36 100.0 37 .................................... ACACAAAACAACTCAACGTTAGTCCAGTTTTCAAAGA 147994 35 97.2 36 ....................-............... AACGATTTCGCGGTCGAAAACGGCAAAATCCTGGAG 147923 36 100.0 37 .................................... ATCGTACCCTTCTACGACCTGGATTTTGCCCAGAGTC 147850 36 100.0 37 .................................... ATAAAGACGGGGATTATACGTTTGGAAAGGGTAATGG 147777 36 100.0 36 .................................... TTGAGCTTTTCCTCAGTCAATTCCAAGTAATCTTTG 147705 36 100.0 36 .................................... GAACTTGATTTCACAAAACCAACTAAAATTTGCAAA 147633 36 100.0 37 .................................... AATGCGTAATGCGCAAGAGCGCCGCTGTAAAGTGGCA 147560 36 100.0 36 .................................... TTTGCCGCTGCCGCAGCCAGTGGCAATACGGTCCCC 147488 36 100.0 36 .................................... GAGATACTCTTTGGGAAGCTATTGACAAACTAATGA 147416 36 100.0 36 .................................... AGGCTGTACCGAATAAAGAATTGACATATCATTAAG 147344 36 97.2 37 ...................T................ TATGGCTTTCTCGTTCAGCTCGATGCGGTATTCATCG 147271 36 100.0 36 .................................... TATGAGTTCTGAATGCTGTAATACCGCAAGTTCGCA 147199 36 100.0 36 .................................... GTCTAGGGTAATCATACTACCTTTCTTCTATCTTAT 147127 36 100.0 37 .................................... GCAGCTTGTAAATCAAGAAGATAAAGGTTCACTTCCG 147054 36 100.0 36 .................................... GTTGCGTTCTTCGTAGGTGCCACCTTCAGGTTTTGC 146982 36 100.0 36 .................................... CGCTTGGACACGCGCATAACCGACCTCGGTCGCGGC 146910 36 100.0 36 .................................... AATGTTCACGCCAGAGGCGATAAAGGTACAGCTCAT 146838 36 100.0 36 .................................... TGGCGGGAATGGGCAGCTAAATTTTAACTCGTCCGA 146766 36 100.0 37 .................................... ATAGTAACTCCAATAAGGCTGGTTGAAACAATCCATG 146693 36 100.0 37 .................................... AGTATTGTTGAATATACCGGAGACCGCGTCCCACTAC 146620 36 100.0 38 .................................... AGCATTTTCATTTCCTCTTAAAGTTGGAATTATAGATT 146546 36 100.0 37 .................................... TATGTGGCAATAATTTTCTTTCTTCGATTGTTATGGT 146473 36 100.0 37 .................................... TGGCGTTGTCCTGGGCGATTCCAGCGCCTCTATTACC 146400 36 100.0 36 .................................... TAGTCAAGCGATGAAGACTATGGATAACATCAACTG 146328 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 72 36 99.9 37 GTTTTCCCTGGCCTCGTGCCGGGGCCTCATTGAAGC # Left flank : TTACGAATATCTGTATCTGGTCACTTACGATATCAGCGATCCGAAGCGCTGGCGGCGCGTGTTCAAGCTGATGAAAGGCTACGGCGACTGGCTGCAACTGTCGGTTTTTCAATGCCGTCTGAGCCGCAAGCGCCATGCCGAGTTGATCGCTCTGCTGGACGGCATCATTCATCATACCGAGGATCATGTTCTGATTATCAACGTGGGTCCCGCCGAATCGGTCAAGCCGCAAGTGGTCAGTTTGGGCAAAGAATTTGAAGTGCTGGAACGTCAGCCGGTGATTGTGTGACGCTATTTTTTTGCCGCCTCCGGGCGAGCGCTGCAGTGGCGCAAAAGTCAGCGGCAGCGCTCGCGAAGGATTGTTCTTTAAAAATCAGGTTATTACAAATGGGTATGGATTTGGAGTACGGGTTGTGTATAATTGCCGAGGCGCAGGTTAGGCCAGCGCTCGCATTTGACCGCGCCAAGCCTTGGTTTTCAAGGCTTGGCGCGCGGGCTGT # Right flank : GGTAAGCAAATCGTAAATACCCTGATCAAACGTAAGCGGCCAGCGGAACCACATAGCCAGGACTAAAACGTTATGATTTAATCCGCGAAGCGAAGAGGCAGAAGCTCGTCGATGCGACTGTTGGGCCAAGTTGGGAGCTTTTCCAGGGTTTCTTTTAGCCATACCGCTGGATCGAACCCGTTGAGCTTGGCGGTGCCGAGCAAGGTTTGAATGATGGCGGCACGCTGGCCGGCGCGTTCGGAGCCTACGAACAACCAGTTTTTTTTGCCCAATGCAATCGGACGAATGCTGTTTTCGATCGGGTTATTGTCGATCGGCAGATCACCAGTCTCGGCGTAGCGCGTGAGCGCAGCCCATCGCTTCAAACTGTAGTCGATCGCTTTGGCGGTGGCACTGCCGGGCGCGGTGCGCAAACGGGTTTGCTGAAGCCAGTCGTGGAAGGCTGCCAAGGTCGGCAGCGTTTTTTCGACACGCAGGGCTTGGCGCCCATCGGGCGTTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCTGGCCTCGTGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 3185361-3190490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3185361 28 100.0 32 ............................ AAAGAAGTGATCGACGACTTGAGCGGCATCTT 3185421 28 100.0 32 ............................ TCGCGATAGGTCAATCGCCGGGCGCTATCCAG 3185481 28 100.0 32 ............................ TGATGAAAGTCAAGGCCGTCAGAGACGGGTTT 3185541 28 100.0 32 ............................ AGGATAATTGGTCCTGAACCACGTTACGAACA 3185601 28 100.0 32 ............................ TTTACGACAAATTTATGTCGGTCAACCGCTGT 3185661 28 100.0 32 ............................ GCGGTATCCGCTCGCACGGCCGCCGCCGCGGG 3185721 28 100.0 32 ............................ TGCAGACGCTGAGCAACTGGCACAAGGATAAG 3185781 28 100.0 32 ............................ AAGCGACATGCGCAGAGAGCGGCTGCCCTACA 3185841 28 100.0 33 ............................ GATAAGCTGATCGACGTCTTCACCGGCCCCGCC 3185902 28 100.0 32 ............................ GCCCCAAGTGAGGCGTCATATATGCCGATAAT 3185962 28 100.0 32 ............................ ATCATTGACTGTCCATGATTCGCCGTCTATGT 3186022 28 100.0 32 ............................ AGCTGCAAAAGGCTGCACGAAATCTACCGGAC 3186082 28 100.0 32 ............................ ATGCACGGGTTCAATGCGCCGATTAAGCAAGA 3186142 28 100.0 33 ............................ TCTCTGCGCGCGAAGCCGCGTCACTAGTCAATG 3186203 28 100.0 32 ............................ AATAAAAAAACCAAGGAGCTCAAGGAATTGGT 3186263 28 100.0 32 ............................ GGAAAAATGAGCGCCGAAGAATGGGCAAGGCG 3186323 28 100.0 32 ............................ TTACCTTTAACCGGCTGCCGACGTTCGTGCGC 3186383 28 100.0 32 ............................ GATACCTCTATTTTCATCTCTACGCTCATGAT 3186443 28 100.0 32 ............................ TGCTGGAACAGCTCTTTCGCGTCGGTCAGGAT 3186503 28 100.0 32 ............................ ATCACGCCGAGGCAGCGTTTAACTGCCCGGTA 3186563 28 100.0 32 ............................ AGCACTTTGTCCGCGCTTTGCGTCACCGATTT 3186623 28 100.0 32 ............................ GACAAATCGATCGGCATCGAACTTATGCAAAC 3186683 28 100.0 32 ............................ ATTGCTCCATAGTGGCTAAGTATTTTTCGCCC 3186743 28 100.0 32 ............................ AAACATTGTGAATAATTTGGGCGAGGCTGTCA 3186803 28 100.0 32 ............................ GTGGAGAAAGTCGCGCTCGACACGAAAGCGCC 3186863 28 100.0 32 ............................ AGTTTCCCGCTGCCGGCGTTCATCATCACGCA 3186923 28 100.0 32 ............................ AGACACCGGGCTTCGTTTTTTCTAATGTTCCA 3186983 28 100.0 32 ............................ TAAGCTGGATTTCCTGCCCTGCCGCCGACTTG 3187043 28 100.0 32 ............................ TAATTTTATCAAGTGAATCCCATGAATGTATT 3187103 28 100.0 32 ............................ TATACCGCCCCTGACCAAAACGGGATCTTGAA 3187163 28 100.0 32 ............................ CGCCCAAGGTGGCAATATCGAAACTGGTTAAT 3187223 28 100.0 32 ............................ ATCATCGCCAATCAAAACCGCTGACCGCAATT 3187283 28 100.0 32 ............................ TCGGCTGCTGGCTCCGTCCAACTTCCGCTATC 3187343 28 100.0 32 ............................ TTGCTGGAGCGGAATCGGCAGCGCGATCTGAT 3187403 28 100.0 32 ............................ AGGAAGCCGCTGTGCAAATGGGCGATATGGTG 3187463 28 100.0 32 ............................ ATATTATTACAGGCTGAGATGGCGATGAATAG 3187523 28 100.0 32 ............................ TTTAACGAAACAACCGGAGAGCACAAATGAAA 3187583 28 100.0 32 ............................ TGCCCCGCTCGATCGGGGATGGCGTGCGCGAT 3187643 28 100.0 32 ............................ ATTGTCATCCCTAATTTTATCAAGTGAATCCC 3187703 28 100.0 32 ............................ AACGGCTACGCGCCGGTACGCTGCAGGGTGTA 3187763 28 100.0 32 ............................ AGCCGAGCCCATCAATGCCGGCAGCGCATTTA 3187823 28 100.0 32 ............................ TCACGATCCACCAACAGCCCGCCGTCCGGTAG 3187883 28 100.0 32 ............................ TCAACCGTCCATTTGTGGATGGGGCGATAAAT 3187943 28 100.0 32 ............................ TGCCGAACCGGGTTTCTGACGCTGGATTACGT 3188003 28 100.0 32 ............................ AATGTCCTGCCGAACCGGGTTTCTGACGCTGG 3188063 28 100.0 32 ............................ ATTCCATGACGCCGCGCATTCGCGCATAGACC 3188123 28 100.0 32 ............................ TCGGACCCTTACCAGCAAGGGCTGATTACTCG 3188183 28 100.0 32 ............................ CAACCGTTGGCGGCAAGGCAGGCGCAATCAAA 3188243 28 100.0 32 ............................ TTGGCAGCGCATTGGCGATTGTGCCGCTGACG 3188303 28 100.0 32 ............................ TAAACCCTGTCCTACCATGTCCGGGGCCCGTG 3188363 28 100.0 32 ............................ TGATCTGGGTATGCGTCGTTTGTTAATTTTAT 3188423 28 100.0 32 ............................ ATAATGGCGGTCGGCGTCATGTCGCCAGGCGC 3188483 28 100.0 32 ............................ TGGTCTTGCACGTCCATGACGCGTGAACCTTG 3188543 28 100.0 32 ............................ TGAGGTTTCATGCGTGATTCTGGCGCGACCTA 3188603 28 100.0 32 ............................ ATCGGCTTCGGATTCGGCGTAGGCCAATGCAA 3188663 28 100.0 32 ............................ TTATCCTGCGCCAATGGGATCTCCTGACCAGT 3188723 28 100.0 32 ............................ AGCAAATATTCTCAGTTTGCAGTCTAAAAATT 3188783 28 100.0 32 ............................ TATACCGGTCATCAATTCGGCATCATCGACCA 3188843 28 100.0 32 ............................ TGGAATCGAGCAAAGCCGTTGCCAACGTCAAC 3188903 28 100.0 32 ............................ TACTGCCTAGTCCACGATCTCCCCCTCTCCGA 3188963 28 100.0 32 ............................ AAGCCCATGAGCAGGCAATACAACCGCCATCT 3189023 28 100.0 32 ............................ TCCGGACTGTCGCGCCTTTCGTGGCTGGCGCA 3189083 28 100.0 32 ............................ GGTGACTTCAAAACCGAAACGCAGATCGGTAT 3189143 28 100.0 32 ............................ ATGCCCTGCTTTTCTTTTTCTGAGATCAATAA 3189203 28 100.0 32 ............................ TGAGCGGACAATGCGTTGCAGCGGTGCTGTCA 3189263 28 100.0 32 ............................ TTCACGAGCGCTTCCATCAGTACAGGGGGAAC 3189323 28 100.0 32 ............................ AGAAGGCCTATCACGAGAAAAGGAAGCGTAGA 3189383 28 100.0 32 ............................ TGAGCGGACAATGCGTTGCAGCGGTGCTGTCA 3189443 28 100.0 32 ............................ TTCACGAGCGCTTCCATCAGTACAGGGGGAAC 3189503 28 100.0 32 ............................ CATGTCCTGAAGCGACCGAGAGGCGTCCCGCG 3189563 28 100.0 32 ............................ TTCACGCAAACCGTGGTGCAGACCTTCAGCAA 3189623 28 100.0 32 ............................ GACAGCGATCGTTGTCGCGTTGGCAATGGCCG 3189683 28 100.0 32 ............................ CCTATCGAGCCGGGGTTGATGTGGTCGCTGCA 3189743 28 100.0 32 ............................ TGCTCGATGCGGTTTTGCAGCCCTTTCAGGCC 3189803 28 100.0 32 ............................ TTGTTGATCTGCGCAATCTCGCTGTTGTAGCG 3189863 28 100.0 32 ............................ AGTTACGAGACGTGGCTTACGTTCATCAGCGG 3189923 28 100.0 32 ............................ AGCAGCGTTGGGGAGTGTTCACCGCGAGCGAA 3189983 28 100.0 32 ............................ ATGCACCACGCCGCCATCATGATGGGCGAGTT 3190043 28 100.0 32 ............................ CGTTCGTAATCACGCAGTTGACCGGGGTCGCA 3190103 28 100.0 32 ............................ CTGAAAACTTCGATGCCGAGCTGGGCCGAAAA 3190163 28 100.0 32 ............................ AAGGCTGAGGAACTGCTCGAACGCGATACCCG 3190223 28 100.0 32 ............................ GTCGGCATCAGCATCAACGCCACCCACGGCGC 3190283 28 100.0 32 ............................ TGATGCTGGCCGGAGACATAGACCTGATCGTA 3190343 28 100.0 32 ............................ TGACTGCCGCGCCCTTTTTTCTGTTTGATGAC 3190403 28 100.0 32 ............................ CGGGGCGAACGACATTGAAAAATCCATCATCG 3190463 28 78.6 0 .................CG.....ATTT | ========== ====== ====== ====== ============================ ================================= ================== 86 28 99.8 32 GTTCACTGCCGTACAGGTAGCTTAGAAA # Left flank : CAGTGCAATGTACGGGAATGGCTAAGCCGTCTCAGCGATTATGTCCACTTGACTCAAATCCGCGCCATTCCCGATCGCGTTCGAACCCATGCCTATTACCGGCGCATCCAGTCGAAAAGCAGTAGCGCCAGACTGGCGAGACTGGCAAGGCGCAAAGCCGAACGGGAAAACATCGGTATCGAACTGGCGATTGCAACGTTCGAAAACTGCGTGGAGCAGCGCATCGAGGCGCCTTTCGTATGGATGAAAAGCCAAAGTAGCGGGGAAAGATTCCGTTTGTTTATTGAGTATGTGGAAACCGGTGAACCGACGAAAGGCGGTTTTAGCACCTATGGATTGAGCCATTCAAGCAGCGTTCCCGTTTTTTGACCAATGCCGGAAATAGCTTTTTAAAAATACAGAAAAATCAATTAGTTGTCTTAGATGGGTTTTTCGTTGGTAAAAACGGAAAATTCCGTCCAAGGTATTGTTATGCTTATCTAAATTGAAGTCGATCCACA # Right flank : TCGTTTGCAGCCAGGCGTTTCAATCTGCGGACGAGAATCGCCGCTATGCGGTTGTGGATCGGCCGCACATGGCTTTGACCTTAAAAGAAGGTCTCTACTCGCTGTTGTCGCTAGGCTTGTCTTCGTCGTCGGCTTGATTATCCAGCGAGCCCATCTTGGTAAAAAACACCAGAGATAAAATAACCGCCAGCGCCATTACAATCTCGAAAACCATTCTCAACATTGCCGCCACCTTTGAGTCAGGGATACTTCGGATTCTGATCCGGAATACAAAGGATTGCAAGATATCTTGGAGAGCGAGATAAACGCTGTTAGTGACGTCAAGCCCTATGAAGAATGGGCTCGAACGATTTTCCCGGCGTCAGGACGCCGAAAGCGACATGAATGGCTTGCGCATCAATTGGAAAATGCAATCCATCGCTAGTGGCAATGCCGTTAAGGAGGCTCTGATGAGCTGCAAAGCTAGCTTTGCAACTCATCGAACCGATTGACAAAGCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3229510-3229298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3229509 29 96.6 32 ..............T.............. TTGCCGCCAAAACCGTAGGCGGATAGGCCGTC 3229448 29 100.0 32 ............................. CCGAGCGGAAAATCTACAACGCCGTGGCCCGC 3229387 29 96.6 32 .......A..................... ACTTATGGTGGGCGATACGGGTACCCCATGAT 3229326 29 93.1 0 .......................A...T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCACGAGCGTGGGGATGAACCG # Left flank : TCCGCATCGAAAACAGCCGGCGTGCTCGACAGCGGCGGCGCCCGGCATTTTTTGGCCGAAAAAGACCCGGATCGGTCAGTCAAGTCACTGCTGCAAAGCCCAAACAAACAGCAAGATGTCAGTGGCCTGCTGACATTGGCGCGCGATCCCGCGCAACGGCAAAACCTTGCGGGCGCGATTAAAGATCATTGGCTGAGCAATGTGACGCAAAACGGCGCGACCGACATTCTGGGCAACCCGGTATTCAATCGGGGGCAAGTGCTCAAATCGATCAAAGACCCCGCGAATGCCGGCTTATTGCGCGGCCTATTGGACAATGAGGGGCTAAGCCGCCTGAATACCATCGCCAAAGACCTGGAACGTAGCGACTATTTGAATTATGCGCCCAGGGCGCGCGGCTCGGATACCAACGCTAATCTGGGGAATCGAGCCTTTGTCGGTCGTGCGACCGATACCGGCTTGGAAAAGATATTCGGCCGCTCCTACGGGTTGTTGAAATC # Right flank : ATATGGCTACACTAAACCGGACACACTTTTTAAAATATATCGAAAAAAGTGAGTCCCCTATGAGTCAAGAAAAACCCAAAACCTATACTGCGGAATTTAGAGAATCGGCCGTGAAGCTGGCGAATGAATCCGATCAATCGATCGCGCAGACCGCCAAAGACCTTGGCATTAATATAAATACCCTGCATACCTGGATCAGCAAATACAGTCGGCCGACTGATCAGGATAAAGCTATCCGCACCGACCAGCATCTTTACGATGACTAAACAACCACCGGCTAAAAGCCGGTGGGTTTGGGTTACGGACTGAAAGTCCGGGATACGCGTCGGTTTAACGACGCGTCTACGGTTCAACTTTAAATTCGGTAGCTGGATCCGACTCAAAATGATGCTCTAGATATTCTTTGATCATCTCTTCGGTCATCTCTCCCACCGTGGCACAAAAATACCCCCGCGCCCAGAAATGCCGCCCCCAGTACCGCTTCTTCAACGCAGGAAACT # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3242076-3230639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3242075 29 100.0 32 ............................. TCAGAGACAAGCGAGACCAATATAACGCTCAA 3242014 29 100.0 32 ............................. ATATCTGTGTATCTAACAGAATATACAGTCTA 3241953 29 100.0 32 ............................. TTTTCGGACAGCGACGGCGTCGCGATGATGGA 3241892 29 100.0 32 ............................. TCTCATTGGTCACTTTGGCGCTGATCCTGTTA 3241831 29 100.0 32 ............................. CCGTTTTGAGCGGCTTTTTCTACTTAGTGCTA 3241770 29 100.0 32 ............................. GCCGCCAACAAACGGGTCGGCGATCAAACCGC 3241709 29 100.0 32 ............................. ATTATCCAGCGTTGGAGAGTATGATCGGCGGC 3241648 29 96.6 32 ............................A TGTCGTAAAGCCGCTTGTTATCGGATAGTGCC 3241587 29 100.0 32 ............................. CATTCATCGACATCCTCAAACCCGCCGACGAG 3241526 29 100.0 32 ............................. CGGTGGATCGACGGCACACCGTTGAGCAGTTG 3241465 29 100.0 32 ............................. CCGGCACGTTTATCGTCGATCCCGACAAGGGT 3241404 29 100.0 32 ............................. AACGGCGACAACTACCCGAACGAGATTGTTGT 3241343 29 100.0 33 ............................. CGCGCGGGCGCACGGCGCGAAGTCTGCATGAAA 3241281 29 100.0 32 ............................. CCCCGCGTTCTGTTAAGGCTTGTCCGCAGATT 3241220 29 100.0 32 ............................. CACCATGCCTTCGAAACGTTCGGTAAAGCCGA 3241159 29 100.0 32 ............................. ACATGCCGACTGATCTTGTGCCACGCGCCGCG 3241098 29 100.0 32 ............................. CCATGGACGAAACCTGCAACCTGCGCCTGCAA 3241037 29 100.0 32 ............................. CTGATCGCGCAACTGACCGCACAAATCGTCGA 3240976 29 100.0 32 ............................. CCAAAAAAAACGAACCAGCGGAGACTAAATAA 3240915 29 100.0 32 ............................. CGCTCCAACTCAGGCAGGGTCAGTTGGAAGAT 3240854 29 100.0 32 ............................. TTGCGAACGTCGGCGACGACAAGATTAATCGC 3240793 29 100.0 32 ............................. GAGTACCTGAGTTTGTACGAGCGGGTCGGCAA 3240732 29 100.0 32 ............................. TTCGTCGGCGGCGCGCCTTAGTTCGGCGTTAG 3240671 29 100.0 32 ............................. AGCTATTCTCGCAGAGCATATATAGCGTGCCG 3240610 29 100.0 32 ............................. CTAATGGCGCAGGTTATCCGAACCGTTCCCGC 3240549 29 100.0 32 ............................. TCAGCGCGGCTTGTACCGCGCCCTTTTCAGCA 3240488 29 100.0 32 ............................. TTGACTTCGCATACGACGAAATCGCTTGTCGA 3240427 29 100.0 32 ............................. TGCGCTCGGAAGACGACGCCACGGTCTACCTG 3240366 29 100.0 32 ............................. ATTTACAGCGCATACACGACGCAGCTTTTAGG 3240305 29 100.0 32 ............................. TACGCACCGCTGATTCTGGTGCCGTAGGCAAT 3240244 29 100.0 32 ............................. CTTTTGGGCCGTGTTAAATATCGCACGCTTGA 3240183 29 100.0 32 ............................. ATTCCGAAAGGCAATTACCAACAACACGTCGT 3240122 29 100.0 32 ............................. TTTTGGTCGGTGCGCCTTTCACTTATCGGGTC 3240061 29 100.0 32 ............................. TAATCGACGTTGAATTAGATACGACCGAAAAG 3240000 29 100.0 32 ............................. GATTACCCGGACATTTCCGCCGATGGTCGCAT 3239939 29 100.0 32 ............................. TTATGGTAAGTTATCAGAGCTATCAGAGTTAC 3239878 29 100.0 32 ............................. ATGAATCCCGCAGAACTTGCGGCTTATCTGAA 3239817 29 100.0 32 ............................. GCATCATACATATGCATATTTCGCTTTTCGGT 3239756 29 100.0 32 ............................. TACGCATGGACCCAGCCGACAGAGCCGATCAG 3239695 29 100.0 32 ............................. ACGGTGTTTTTGTTAATAGTCATTTTGTATTC 3239634 29 100.0 32 ............................. CTTGATTAATCTTGATTAATTCAGCTAGTCTC 3239573 29 100.0 32 ............................. GCTGAGATAGACCGTCTACTTAAACTATTAGG 3239512 29 100.0 32 ............................. GCCGGCGTGGTAGTATTTACACTCAGGCAAGC 3239451 29 100.0 32 ............................. GATAAAAAGGGCTTAAGGTTTACATCTAAGCC 3239390 29 100.0 32 ............................. TTTATCGGTTAATGCGTGGATTAGAACTAATA 3239329 29 100.0 32 ............................. TTTTCCCCTGTCCTTTATTAAATTGAGCTGCA 3239268 29 100.0 32 ............................. GTATGTGTTCTGCTAGTATATCCGCCGCCGTC 3239207 29 100.0 32 ............................. GGTTTATTTTAAAAATACTAAAATAATCAACC 3239146 29 100.0 32 ............................. CAACTATCCCATTCAAGTTCAAACATTGAAGA 3239085 29 100.0 32 ............................. GATTTATTTTAAAAATACTAAAATAATCAACC 3239024 29 100.0 32 ............................. CAAAAGCAACCGCAGCATCTTCACATTAGAAC 3238963 29 100.0 32 ............................. GTCTTACCACCAAATGATACTGTTTCTGGTAC 3238902 29 100.0 32 ............................. TCCGCTTTAGTTCGTTTTTCACCGTCCACGGT 3238841 29 100.0 32 ............................. ATATTGTACCCAATGACTTCAGGCACTGGGAA 3238780 29 100.0 32 ............................. TCTTTGAAACCAGCTTCCATGTTTTCAACGAT 3238719 29 100.0 32 ............................. ACTAGCTAGTAGTTGGTATAGATTTTGCCGGG 3238658 29 100.0 32 ............................. CAAAATCGCTATGGCTTAATCTTGATTAAGCA 3238597 29 100.0 32 ............................. CTCAGACGTTCAGATGAGCCATTCAGCCAAAT 3238536 29 100.0 32 ............................. CCGCGATCCGCCCCGCCCTCGAAACCGCGATC 3238475 29 100.0 32 ............................. AAGCGCGCGACTGGCAAGGCAAGTACGAACAA 3238414 29 100.0 32 ............................. CGCCCGCCGCCGTATTGATGACGAGCTGCAGA 3238353 29 100.0 32 ............................. ATTAAAGAGGCACTACCAGTTTTACCTGCCGC 3238292 29 100.0 32 ............................. GCAGGAATTTATTTATCTAAACCTAGTTTTGA 3238231 29 100.0 32 ............................. TTATGGGATTTAATAGCTAAATAGATTAATCA 3238170 29 96.6 32 ............................T GGTCAACTCGTTTAAAGCTAACCAAAGGATAC 3238109 29 100.0 32 ............................. TAAATCTATATCTGGGTTCCTAGTCGTATGAC 3238048 29 100.0 32 ............................. ATAACCAAAACCCCAATACCATGAGCAATCAA 3237987 29 100.0 32 ............................. CCAGATTACGGCACAGCTCATAAAGCTGTTGA 3237926 29 100.0 32 ............................. CCCGGATAATAGGTATTAAATATCGCTTTTCG 3237865 29 100.0 32 ............................. ATACTAAAATCAGCACTAACCGATACTGAGAA 3237804 29 100.0 32 ............................. AACCATTTGTTGGTGGGGCTAACTCCATACAA 3237743 29 100.0 32 ............................. ATTACTGTTTAGTCCGTTCCGCTCGCATCTGA 3237682 29 100.0 32 ............................. AGTAAACAACAAAGCCGATTTTGTTATAGCAC 3237621 29 100.0 32 ............................. CAACTATTGCTTCAAAGCTCGAACATCGAAGA 3237560 29 100.0 32 ............................. GGAAACAAAATATTTACCAGGATTATTGAACT 3237499 29 100.0 32 ............................. GCTTTTGCATCGTGAATCAATTGCCCCAGGTC 3237438 29 100.0 32 ............................. TTCCGGCTCCACCTGGGCGCGGGCTAGGTTCG 3237377 29 100.0 32 ............................. AGGGCGTCATAGATTCGCTCCATATTGCGGAG 3237316 29 100.0 32 ............................. GCAACTACGGCACAGGCCGTGATATCGCCGAG 3237255 29 100.0 32 ............................. GGCTTGAAATCGCCCTCGTTCAGCGACGGCGA 3237194 29 100.0 32 ............................. ACCATCGAACAATTCATGGCCGAGCTGGAAGC 3237133 29 100.0 32 ............................. CTCTTGGTGCGCCAGTTCGAGCAACGGCTCGA 3237072 29 100.0 32 ............................. GCATCTAACAGAGCGGCAGATGTAGCGTCGGT 3237011 29 100.0 32 ............................. GCGTAGTTGCGGTAGATCCGGCCGTCGACCTG 3236950 29 100.0 32 ............................. GCGACCCGTTGACCAAAGGCATCGTTGATCGC 3236889 29 100.0 32 ............................. GCCGGCGGCGCCGGCAACCTCGCGCAGATCAG 3236828 29 100.0 32 ............................. TCGCTCAGGACGCGGACGGCCCGGCAAGTGTA 3236767 29 100.0 32 ............................. TGGGTCTCCACCAGATTGTTGCCCTGCTCGAC 3236706 29 100.0 32 ............................. GCAATTCTAGCGCGTCAGCGCGAGTCCGATAC 3236645 29 100.0 32 ............................. GCATGACCGTCGGCAATTTCGACGAGCAGGGT 3236584 29 100.0 32 ............................. GGTGTACGGTCACGGTCCACTGGATCGAAGGT 3236523 29 100.0 32 ............................. ACTACGATGGTCTGGTCGTGTGGCTGCGTGAC 3236462 29 100.0 32 ............................. AAACCTAACGCTAATTAGGCATCCTAAATGAC 3236401 29 100.0 32 ............................. CGTACGCTTGCCATTGGCGCGCGTACTTTCTT 3236340 29 100.0 32 ............................. GCGTCGTAGTCGGTCAGGGTGTAGGTATAGGT 3236279 29 100.0 32 ............................. AAACAGGACATTACCCGATTTCGGCTCTCGTT 3236218 29 100.0 32 ............................. AACGAGGCGGACACCTTGCTGAAACGGCGGCT 3236157 29 100.0 32 ............................. GTCTTTTCATGACTTTTACTACAACATTTGCG 3236096 29 96.6 32 ............................T TTTGCACGGCCGCCAGATAACGCTGGTATTCC 3236035 29 100.0 32 ............................. GCAATGGGCCATGACGTATAACGCTAGCTTGA 3235974 29 100.0 32 ............................. AAGACCTGCGCAAAGACGGCAAGACCGTCGCG 3235913 29 100.0 32 ............................. CCGGATCAAACAGGCCGGCGATGAACTGCGCC 3235852 29 100.0 32 ............................. CTTGCGACGACCGGGCGCTGTGAGATTACCGG 3235791 29 100.0 32 ............................. GCCGCGTACAGGTACACATCGGGATGCGCGGA 3235730 29 100.0 32 ............................. GCGATTCGCTGCGCGTCAGACTCCCCAATCAA 3235669 29 100.0 32 ............................. CCCTGGTGTCCGGCATCGAGTCGGATTTCATC 3235608 29 100.0 32 ............................. CGATATATCGAATCCGAACGAGGAAGGAAAAC 3235547 29 96.6 32 ............................A GGCGCGCTTGTCTTCCGGTATATCGATGCTGG 3235486 29 100.0 32 ............................. GGGTTGGGAACCGCCTGAATGGCCAGATCTTT 3235425 29 100.0 32 ............................. GCAGAGCAGGAAATGTTTACGATGCTTGGGCT 3235364 29 100.0 32 ............................. CACTTCGCACCATACCTCACGCGGATCACCGA 3235303 29 100.0 32 ............................. TTCGTGGGGATTGAGCTTGATGAAACCTATTA 3235242 29 100.0 32 ............................. TGAACGCGCAATCCCTGCAAGCGTCGCTGATA 3235181 29 100.0 32 ............................. ACTTCAGCAGTTTTGCGTAAACCCGAGTCCGT 3235120 29 100.0 32 ............................. CGCCAAGGCCCTGATCTCGATCATCAACCGCA 3235059 29 100.0 32 ............................. ACCCCACGCAAATGACAGACGCCGAATTCGCT 3234998 29 100.0 32 ............................. CCTGACGCGCCGCAGGCAAACAGTCTGCCTGC 3234937 29 100.0 32 ............................. CCAATCGGCGCGCCGAAATCGCCCAAACCATC 3234876 29 100.0 32 ............................. CGCTTCCCGGCCTCCAGCATGGCTTCGGCGGA 3234815 29 100.0 32 ............................. ACCCTGGACCTGACCACCTTCAATATCGCCTC 3234754 29 100.0 32 ............................. CCACGGTCTTCTCCCCCTTTCGGTACGAGGAG 3234693 29 100.0 32 ............................. GTATCCGCTTCTTCGTTCCCGAGGTGTCCGTG 3234632 29 100.0 32 ............................. CGCAAGTACAAAAGCGCCGACACAAAACAAAG 3234571 29 100.0 32 ............................. GCGCTGTTCCAGTCGCTGGAATCAGCTTTGGT 3234510 29 100.0 32 ............................. CGTTCAAGGCAGCATCCGACGCTGAGAAGGAC 3234449 29 100.0 32 ............................. CATCCGACGCTGAGAAGGACAACCGCGCCGCA 3234388 29 100.0 32 ............................. ATCGCCGCGTATTCCGGGGTCGAGGCATAAAA 3234327 29 100.0 32 ............................. AACAACATGGTTAACGGCCTACAGAACCAAAT 3234266 29 100.0 32 ............................. TACGAGCGTGGCGCGGTAATGCCTGGGGGAGA 3234205 29 100.0 32 ............................. AGGAGAAATCGGGGACGAAAAAGAGGGCGTAA 3234144 29 96.6 32 ............................A TCGGTATAAAGCGATAGCGAGTGACTCTAATC 3234083 29 100.0 32 ............................. CGACCTAAACATGTCTTGTGGCGATATTGCCA 3234022 29 96.6 33 ............................A AGGAACGTTACGCGCAGCGGATGGCGGCAATAC 3233960 29 96.6 32 ............................A TTCGACGGCAACGCTTTTGCTAGCAATGGAGC 3233899 29 100.0 32 ............................. AATTCGCCAACTGAGAACGACATGATAAAAAC 3233838 29 100.0 32 ............................. GGCTTGCTGAAGAAGAAAGCCGATATGGCGAT 3233777 29 100.0 32 ............................. CCATGCGCCTGATGCGGCCGCAATGAGCGCTA 3233716 29 100.0 32 ............................. ACCCAAAGTTCGGCGTTCCATCCGTCGCCCTC 3233655 29 96.6 32 ............................C GCGCCGTCTACCGTCCAGTATTCGGGCTCGCC 3233594 29 100.0 32 ............................. AGGCCGACTTGAACCGGCTGCTGTCGGTACAG 3233533 29 100.0 32 ............................. CAGCGATTACTCGATGGCGGTTTCTCGGTCGT 3233472 29 100.0 32 ............................. GCAGGTTTCGACATGGCGATCCAGGAAGTGAA 3233411 29 100.0 32 ............................. GACGGTAACCGCTACGTTCAGTTGGAATCGGT 3233350 29 100.0 32 ............................. CCTTTGCCGTCCAGTCGCTCCGGTGTGGCGGA 3233289 29 100.0 32 ............................. TGATCACCGACGCGGCGACCACGTTCATTGTG 3233228 29 100.0 32 ............................. TACAGCAGTTGCAACAGCAGTTTCAGCAAATG 3233167 29 100.0 32 ............................. GTGACATTTCAATATTCTCTTCTGATTCTGGC 3233106 29 100.0 32 ............................. CTTGCGCCGACATCGTAAACGGCAATGATGAC 3233045 29 100.0 32 ............................. GCTCTGAGATCTGGATAACGTGGAACCCTGAG 3232984 29 100.0 32 ............................. TAAATTCGGTCATTCCACCCCCTGCGGCACCA 3232923 29 100.0 32 ............................. ATTTCGTACGCAGGCACGCCGCGTTCGACGAG 3232862 29 100.0 32 ............................. GTCGTCGATATGGTCACTCGCGAGGCACTGAG 3232801 29 100.0 31 ............................. CCTTTGGTCGAGGGAGCAAAGCGCCAAGGCC 3232741 29 100.0 32 ............................. TTATCCCGACAATCAGAGAGGAAGGCTCTGAG 3232680 29 100.0 32 ............................. GCCAGGTAGCCCTTCCGCTTTGGCTTGTTGGG 3232619 29 100.0 32 ............................. CCCCGTATATCGGACCAACAGGCGCGTTCACC 3232558 29 100.0 32 ............................. CTCTGCAATCAGCGTTCAATCGGCTCGGCGGG 3232497 29 100.0 32 ............................. GCAGTCGCATTCTTTTTTTAGCGCATCGACGC 3232436 29 100.0 32 ............................. TTGTTCAGCGAGCTTGGCCGCCCTGTTGGCGA 3232375 29 100.0 32 ............................. CAGTATATGCATAGATTGGTTTGGGAGAGAAA 3232314 29 100.0 32 ............................. GCCGCGTACAGGTACACATCGGGATGCGCGGA 3232253 29 100.0 32 ............................. GCTATTTGATTAAGCCGCTCCTTTATACCGGA 3232192 29 100.0 32 ............................. TTGTCAACGACGCTAGGCAGAACTCCCCGTCG 3232131 29 100.0 32 ............................. GCCGCCTCTATTCTGACCGAGACGCTATAGAT 3232070 29 100.0 32 ............................. CGTGTCTCCTGCGCTTCGCTCATTTCGAGTTC 3232009 29 100.0 32 ............................. CTGGTGATCGACATTCCGCGCGGCAAGCTCGC 3231948 29 100.0 32 ............................. TAGGTGCCAGGCTGGTCTTGCCGTAAGGCGAA 3231887 29 100.0 32 ............................. ACGGTCTCGGTGTAGACGGCCGGGACATCGAC 3231826 29 100.0 32 ............................. TCGTCCGGATCACCCGGGTGTACGTTTCCGGA 3231765 29 100.0 32 ............................. GTCTTGACCAGCGGTAATAACCGGAAGGCTTG 3231704 29 100.0 32 ............................. AGTATGCTTGGCCAGGTACTCACGCTCGTAGA 3231643 29 100.0 32 ............................. CGTTCGTCGAACGCGTCGCCATCAAACTTGAA 3231582 29 100.0 32 ............................. CTGAATAGCTACGTCATTGTGTCGGGTTACAA 3231521 29 100.0 32 ............................. CGTACCGATCGATGCCCAAGCGATAGCCGAAG 3231460 29 100.0 32 ............................. GTCTGCCGACATCATCTGCTTCGATTTCATGA 3231399 29 100.0 32 ............................. TGTATCTTCCGCATGATGGCGTAACGCATGAT 3231338 29 100.0 32 ............................. CCGTGGATGCGTTCCAAAACCACACTGGCCTG 3231277 29 100.0 32 ............................. TCCTTGCAGCAACCGTCAGTGCCAACGATTAC 3231216 29 100.0 32 ............................. ATATGGGTCCTGGCGCTATGTCTCCTGATCAG 3231155 29 100.0 32 ............................. TTGGTCGACGCGCTGAAAGGCCTGTTCCAGGA 3231094 29 100.0 32 ............................. ATCATAGCGTTAAATTGGCGCGATAACGCGAA 3231033 29 100.0 32 ............................. CGCGACGAAAACCGCAATATTGGGATTGGCCC 3230972 29 100.0 32 ............................. TTGTTGCAAACAGTTGATTGCCATTTTCCGGA 3230911 29 100.0 32 ............................. CAGTCTTCGAGCAAGTCACCGTCGATCCCATA 3230850 29 100.0 32 ............................. CGGCCTACCTGTTTGAGAGTCAAGATGCTGTG 3230789 29 100.0 32 ............................. TCAATTTCGGCCGCCTTCCGTTCCGCGATGAA 3230728 29 100.0 32 ............................. GCATTGTTTCAAAACAACAAACGAATCCACGC 3230667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 188 29 99.9 32 GTGTTCCCCACGAGTGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATCGAAGACGTACTGGCCGCCGGCGACTTGGAAATTCCCAAGCCCGCCGAAGAGTCCGTACTCCCCGCCATCCCCAATCCCGAGAGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCCCCGGTTGCGGGGGCGCCTTGCCGTCTGGCTGATCGAGATTCGTGCCGGGGTTTATGTAGGCGATTTGTCGGTCAAAGTCAGGGAAATGATCTGGGTACAAATCGAGAATGGCATCGAAGACGGCAACGCGGTCATGGTCTGGACCACCAATACCGAACCCGGTTTCGACTTCATCACCCTGGGCAAAAACCGCCGCCTGCCGGTCGAGTTGGACGGCTTGAAACTGGTTTCGTTTTATCCCGAGGAAGACCCGAACGATCAGAATGCTCTTTAACAATTTAACGTTAAAAAACCGGCAAAGAATCGGTGGAAATTTTGAGGCGATTATTTCGCTTGTCTAACAATGTGTTAGGATAAGT # Right flank : ATGGCACCATCGCCCTAGTCAAGCAGAACGGAAGCAACAAATTGATGTATATGGAAGGCGTGGTGGGCAATGACGGCGTCTTTCACACCGTAAATTCTGGATTTAAAACGCGCGAAAACTATTTAAAAACGAAGACGCTGCTCTGGGATGGGGCGCCGTCCCATCAGCCGTTGCCCCCTAACGCAGTCTCGGGCCAGAACAACGCCTACAGACAGACCATATCACAAACCGAGTTTACCGACAAGCAGGCGGAATTGTATCGCCAAGCGGTTGCCGCACGACGCCAACAGGGCGATATCTTCGAGGCCGGCGCCTCACGGCGCATGCTCAAAAGCGATTCAAACAAGGCGCCGCTGCTGGAAGATGCGCGCGTCCCGGAAAACTTCCTGAACGGCTCCCCTGCCGACGTTGCGCAATTTTTGAAGTCGATGCAGAACAAGCCGCAAGCCTTGCGCGCGGCCGAAGACTATTTGTCGACGCAACTGCGAAACCGCATTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGAGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3995384-4002254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3995384 37 100.0 34 ..................................... TTATAATTGGAGTACAACAATGAGCAACAATAAT 3995455 37 100.0 33 ..................................... GATCAGTTCCTCGAAGCGTGTCCGACCTATGTG 3995525 37 100.0 34 ..................................... AGAGCAATCTTAGGAGGATAACATGAAGGTACAC 3995596 37 100.0 34 ..................................... GTCTTTAACGACGTGATGAAACAGGAGGAGCTCC 3995667 37 100.0 33 ..................................... CCACTACCAGGTAGCAGGCTGCCAAGGGAACAT 3995737 37 100.0 35 ..................................... CCAAGGGAACATGTACTACCGGTACGTTAAGTACA 3995809 37 100.0 35 ..................................... CCAAGGGAACATGTACTACCGGTACGTTAAGTACA 3995881 37 100.0 33 ..................................... CCACTACCAGGTGGCTGGCTATCAGGGAAACCT 3995951 37 100.0 35 ..................................... GAATAGCCCAAGGATGGGCTAGTCCGATGAACTTA 3996023 37 100.0 33 ..................................... TGGCTATCAGGGAAACCTGTACTACCGGTTCGT 3996093 37 100.0 34 ..................................... TCGTAAAGTACACGGACACCACCGTGTACTGCGA 3996164 37 100.0 38 ..................................... TTTCAGGAGAAAGATCATGTTAGAAGTATTGTTTTACA 3996239 37 100.0 36 ..................................... AATGAAATATGCTCATATTCTCTCCCGATTATACAA 3996312 37 100.0 34 ..................................... GGCTATTCCGATGAACTAGTACTGGTAGCCAGTA 3996383 37 100.0 35 ..................................... CGGGTACCAGGGCAACATGTATTACAGATTCGTAA 3996455 37 100.0 34 ..................................... AGCAGAACGAGGAGAAGTACTACGATGAGTACTT 3996526 37 100.0 36 ..................................... ACTTGGAGGAGTTCTACTCCTCCATTGACTAGCTAG 3996599 37 100.0 32 ..................................... CTTAAGCAAGCGGTAACTAAAGTAAAACAACT 3996668 37 100.0 32 ..................................... TACAGCTCGGAGCAGTTGCTCCAGATGGTGTA 3996737 37 100.0 35 ..................................... ACCTTCAACATCGAGGGCAGCTCAAACGATTATAG 3996809 37 100.0 34 ..................................... ACTACTCCTCCATTGACTAGCCTAGCTAGCCTAG 3996880 37 100.0 35 ..................................... CAATAATCAAAGAGGCCACTACCAAGTTGCCGGCC 3996952 37 100.0 35 ..................................... GCCACCGAGGAGGAGGCTCTGGACTTCATTGAAAA 3997024 37 100.0 35 ..................................... GGTATAAATGGGACATGCTGACTGGTTTGATAAAG 3997096 37 100.0 35 ..................................... CGTGTACATCTGGCTGAATGGTGCACCTCACCGTA 3997168 37 100.0 36 ..................................... TGTATAATGTCGGGCGACTTGTTCCTCACGACACGT 3997241 37 100.0 34 ..................................... AGGAGGAGAATGTATTATTCGCAAATAAGGAGTT 3997312 37 100.0 34 ..................................... GACCTTGTAGACACTAATATTCCCGCCGTTGTTG 3997383 37 100.0 35 ..................................... AGTTTTGAACATGATTATCAATGCGATGGCTGATA 3997455 37 100.0 34 ..................................... CATATCTGGCTGAACCATACACCTCACCGTATGA 3997526 37 100.0 35 ..................................... AGGCTACCAGGGAAACATGTACGTTCGGCACGTCC 3997598 37 100.0 34 ..................................... AGGAGGCCCTGGCGTATATTGATAAACATGAGGA 3997669 37 100.0 34 ..................................... CAACATTCAAAGAGAACACTACCAAGTTACCGGG 3997740 37 100.0 34 ..................................... CAACATTCAAAGAGAACACTACCAAGTTACCGGG 3997811 37 100.0 34 ..................................... GGTCACCAGGGAAACATGTACTACAGATTCGTTC 3997882 37 100.0 32 ..................................... GTAAAAAAATCGACCTACTCGACACCAATATT 3997951 37 100.0 35 ..................................... GACATCAAGGCAACATGTCCTACAGACTTGTCCGG 3998023 37 100.0 34 ..................................... TTTTAAACATGGTAGACAATGCATTGACTGATAT 3998094 37 100.0 33 ..................................... GATCTGATCGATACCAATATCCCATCCATCGTC 3998164 37 100.0 34 ..................................... ATTGCATGAGCTGGAAACGGTTCAACGCGCTGGC 3998235 37 100.0 34 ..................................... ACCGATACAACGGTGTATTGTGACGAATCTTTAG 3998306 37 100.0 34 ..................................... CGTGGGCTATGGTGTTGAGTTACTCTTGATCGAG 3998377 37 100.0 36 ..................................... GGCTACCAGGGCAACATGTCTTACCGGTACGTCAAG 3998450 37 100.0 32 ..................................... TAGGCTATCAAGGAAACATGTCTTATAGACAT 3998519 37 100.0 34 ..................................... ATGAACTAGTTACTGGTAACCCAGTAAGGTACTC 3998590 37 100.0 35 ..................................... AATGGCTATCAACAAAAATACCATCGTAACCCTGC 3998662 37 100.0 35 ..................................... TTGCGGAGAAGCTAACTTTTGTTGGTCTGAGAAGT 3998734 37 100.0 33 ..................................... GTTGAATCGATGGAACCCGGTTTCAGGGACTAC 3998804 37 100.0 34 ..................................... TTGAATAACATTCTAATTGGAGTAAGAAAAATGA 3998875 37 100.0 33 ..................................... GAACTCTGCCGCCAATTTAGTAAAGGGCAGGGG 3998945 37 100.0 35 ..................................... CTAACGTAATGGCTGATAGGGGGGGTTGATAACCC 3999017 37 100.0 33 ..................................... TTATCGGCACGTCCGTTATAACGATACAACCGT 3999087 37 100.0 31 ..................................... GGATTCTTGAACTAACTAACTAATAGGTGGC 3999155 37 100.0 35 ..................................... CTGAACAAGCGCGCAAGAATGTCAAAAATCGCTTG 3999227 37 100.0 35 ..................................... TGAGCGTAGACGCATTGTGTGTAATGTCAAATCAA 3999299 37 100.0 34 ..................................... CTTAATAAAGAGCTGTATATATATGATGAGAATG 3999370 37 100.0 35 ..................................... TTTATGATAGTGATAAGTCAACGCTCATCATAAAG 3999442 37 100.0 32 ..................................... TATACTATACTAAAAGATTCTCAGTAACTAGA 3999511 37 100.0 34 ..................................... GCCTGGGCGATGAAGACCTCATCGACGTGATTAA 3999582 37 100.0 33 ..................................... AGTCGCTGAATCCGCATTGCGCGCCGAATTACT 3999652 37 100.0 35 ..................................... TTGCCAATAGGAAGAAGCTTATTATGAACATGAAA 3999724 37 100.0 35 ..................................... TATGTAGCGGAAAGACTATGGTCGCAATTTCAAGG 3999796 37 100.0 34 ..................................... GTTTAATTAGAGGTATTATGATCACACTAACTGA 3999867 37 100.0 34 ..................................... AACGCCCTGCAGGAGGGCCTAACCTTCAATGTAG 3999938 37 100.0 33 ..................................... GTAAAGGCTAACTTACTAATCGAGCAGAGATTT 4000008 37 100.0 34 ..................................... TCAAGGTGAGCAGCAGTTAGGATATCTAAAGACT 4000079 37 100.0 34 ..................................... CCATCAAGGAAACCTGTATTACAGGTTTGTTCGA 4000150 37 100.0 35 ..................................... AAGCTGGCTTCAAAGACTTTGCCTTATCAACCTAT 4000222 37 100.0 34 ..................................... GAAGTTTTTCCGCTGCATAGATGAAGTGCCCATA 4000293 37 100.0 33 ..................................... AAACGGAAATATCAAAGTCTCTATGCTGCAGGG 4000363 37 100.0 31 ..................................... TCCTATCGCATAAAGTCTACAATGATGTGCT 4000431 37 100.0 34 ..................................... GATTTCTTATCCAACGTAACACTGGTTCATAGCA 4000502 37 100.0 35 ..................................... TTAATTGCCCTTATCCATTCATTAACTGATAAACT 4000574 37 97.3 35 .....................A............... TAAAAGATTCTCAGTAATTAGAACTATAGACAATG 4000646 37 100.0 35 ..................................... AACGATGTAACGCAGAATGTAGAGCTGATTCAATC 4000718 37 100.0 34 ..................................... ATACCCTTCAACGTAGAAGGCAGCCCAAATGATT 4000789 37 100.0 34 ..................................... GTTCGGTACACCGACACTACGGTGTACATGGACG 4000860 37 100.0 34 ..................................... TAGGTCATGGGAAAAATTATGGGAGGAACTAAAA 4000931 37 100.0 34 ..................................... GGGTTTGAGAACATCACTCAAGCTAATGGCAGTT 4001002 37 100.0 34 ..................................... AAGGCTCTACAAATGACTACAGAGTGGAAAAGGA 4001073 37 100.0 35 ..................................... ACATTTGGCTAAATGGCTCTTCGGAGCGCTTGAGC 4001145 37 100.0 33 ..................................... TCATATATCAAACAACTATATCCCAATGATGAG 4001215 37 100.0 34 ..................................... TCTCAGGCTCTATGGAACGGCTAAGCTTCAAGAA 4001286 37 100.0 34 ..................................... CTAGAGTCACGGCGAAAAGGTTAGAAGAATTTCA 4001357 37 100.0 35 ..................................... GGATTATTGAACTAAACTTAAAACCGACTATCTTA 4001429 37 100.0 34 ..................................... GTCATGTTAGAGAAAGAAGAAGAAGCTAAACGAA 4001500 37 100.0 35 ..................................... GGATTTGAACCTTAAATTCTTTTATAAAAAATTGT 4001572 37 100.0 35 ..................................... GAATACATGAATCAAAAATTGATGAGCCACATTCT 4001644 37 100.0 35 ..................................... ACTTACTTTTGAGAGGGATCATCTATGGAGATTTT 4001716 37 100.0 35 ..................................... TAAAGATATGAACAAATACAACGCAACGATCGAAA 4001788 37 100.0 34 ..................................... TCACAAAGCCCAAAAGCTCGCATCTGACGCACTC 4001859 37 100.0 34 ..................................... CTATCATGTTATTTCACATTGAAACTTTAGGTGA 4001930 37 100.0 33 ..................................... AGACGTTAGTGAATTTATTGACAATGACGCTTT 4002000 37 100.0 36 ..................................... ATGAAAATGACAAAGATGTTAGTGAATTTATTGACA 4002073 37 100.0 37 ..................................... TAGAGTGCGCTAATCACTAGCGCACTCTTTACGCTGT 4002147 37 100.0 34 ..................................... TTCGAACATATTAAAAGACAATACGACTATTTAG 4002218 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 97 37 100.0 34 GTCTTAATCCCTTCTTTATAAGGTCTGTTATTCAAAT # Left flank : GTCCTTTGTCGTATTCAAGGCCGAGCCAAGTCATGCCTTCGAGAATCGCATTGACCGATTCCTGCGTGGAACGTTCGAGGTCCGTATCTTCGATGCGCAAGATAAAGTCGCCGCCATGCTTGCGGGCGTAAAGCCAGGAAAAAAGCGCGGTACGGGCACCGCCGATATGCAAGTACCCGGTGGGGCTCGGAGCAAAACGTGTAGTAATTGTCATTGAATTCCATTGTGAATTGAAGGGATTTAGCCCACTATTTTAGCCTTTATCGGGCATTAGCGACAATTCCCGGAAATGATCTCGGCAATCCTCAATTTAGCCTAGTACTCAGTCAATCTTGAAATGTCGGATCAGTAGTCCCCTATCGAGGAATTTCCCTGATGAGAGTGGCGATATGGCTAAGCAATACAGAGTGCGACTCACGGAGGAAGAGCGTACCGATTTAGAAGCTGTGGTTTACAAGGGAAAAGCTGCGGCGCATAAAAAGGTACAATTCAAAAACTAG # Right flank : TAGCTCGTTCATACTCTCCTCTATTTTTCAGATGGTTACAGATAGGGTTGCCAAGATTTTTCATATTTGAAAAGTTAACCGTTGGGACTGAGCCATTTTTTCAGTTGCTGCTGTAAATTCTTCAGCTCGGAAAGACTACAAAGCGTAATGTTCAGTTCTTTTGCACGGGCACGGCTGCTTTTGTCCAGCGTATTGAAACTGATCAGCATGGCCTTGCCCTGCAGGCCGCCCATCAAATCTCGCAGGCTGTCGAGTTTATACAATACATCCGCGCCTTGCGTCGAGTCCCTATAGCTTTTGGTTTTGCATTCGATTAAATGCAGCCGGTTAGCTTTGATCAGGCCGATGTCGATTTCGTTCTTTACGGCTGTTTTTCCGGCAGGGTGCCGGCTTATCGTAATGTTACAGGCAATATCCTGGATGCCCGAAGCTTTCTTCAGCCCCAAGCATTCCGCATAGGCGAACATTTCCAGCCAGCCGCCGTTGGCGGTAAAGCGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTCTTTATAAGGTCTGTTATTCAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //