Array 1 34021-31856 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVQ01000029.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU494b NODE_29_length_57379_cov_15.3277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34020 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33959 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33898 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33837 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33776 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33715 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33654 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33593 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33532 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33471 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33410 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33349 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33288 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33227 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33166 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33105 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33044 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 32983 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32922 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32861 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32800 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32739 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32678 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32617 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32556 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32495 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32434 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32373 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32312 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32251 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32190 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32129 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32068 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32007 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 31946 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31885 29 96.6 0 ............T................ | A [31858] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52214-50783 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVQ01000029.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU494b NODE_29_length_57379_cov_15.3277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52213 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 52152 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 52091 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 52030 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 51969 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 51908 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 51847 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 51786 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 51725 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 51664 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 51603 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 51542 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 51481 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51420 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 51359 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 51298 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 51237 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 51176 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 51115 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 51054 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 50993 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 50932 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 50871 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50810 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //