Array 1 99768-98518 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOM01000007.1 Salmonella enterica subsp. houtenae serovar 16:z4,z32:- strain BCW_1546 NODE_7_length_271628_cov_1.69339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99767 29 96.6 32 ............................C CAGCATCGCCAGGATACGCGCGCCGTGGATAT 99706 29 100.0 32 ............................. GATGGTGAGTGGCCCATCGATAACGGTGTCAT 99645 29 100.0 32 ............................. GACACGCTCAACCGCAGCGCAGGCGAAAGCAA 99584 29 100.0 32 ............................. GAGATTAACGCGGCTAATGACCGCCAGAAAAA 99523 29 100.0 32 ............................. TAAAGTGGGGCATCTGGAACGTCGCGCCCCAT 99462 29 100.0 32 ............................. CTGGCGGTGAATAAACAGCGCGAGTGGCCTGA 99401 29 100.0 32 ............................. GCCGTGGCTCTTGGTGCGACGCTTTCAGAAAA 99340 29 100.0 32 ............................. CGCTATGGCGATATTGCCGATGCCATGCTGAC 99279 29 100.0 32 ............................. CCCAGCTCCAAAAATATTGGGCGGGTGATGAT 99218 29 100.0 32 ............................. TGCTTATATTGGAAACTAAATGTTATCCAGTG 99157 29 100.0 32 ............................. GAGTGCGGAGATGGTTGACCTTGGGGATACGG 99096 29 100.0 32 ............................. AACATGAGTTGCTGGCGTTGTTAAAATTTTGT 99035 29 100.0 32 ............................. TGCGCCGCCAGATGCCATTTGCAACCGCATCG 98974 29 100.0 32 ............................. GTCACACGTCGCCAGACGCTTGCGCGATTTCT 98913 29 96.6 32 ............................A GAATTGAACAGAGCGATAACCGCCGCCAGCGC 98852 29 100.0 32 ............................. CAATACGGCTGGACGGGGTTTGATTCGTTAAC 98791 29 100.0 32 ............................. GTATTTAACCCAGGATTCACACTCGGCCATTC 98730 29 100.0 32 ............................. TTGGATCTCGCTAATGATCATGGCGCGGAGAT 98669 29 100.0 33 ............................. GCTCGATGAGGCGTTTACCTGCTGGTATCAGGC 98607 29 100.0 32 ............................. TTTCTGCTGTGTGTACCCGAGCTCTTTCCTCC 98546 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATAATGTCCAGCGCTTCGCGGCGTTGCTGTATCCAGTTTACGCTCACGGTACGTTGCATTTCCGGGCGCGCGGCAAGCGGTTGCTCCAACAGACCGGAGGAAGAGAGATGGCTTAACCACGGGTAACCCGCGTTATCGTTGGGGTCTGCGGCGGCGAATCCTGCGCCATTATTGAAGGCGTCGAGTAATTTTTCCCGCAGGGCTGCGGGCAGCGTGGCGCTTAAAATAATCGCGCTACCGCCCTGGGCGGCATGGAAACGCAGTAGACCTTCCAGCAATTTCACCATATAACCATCGTAAGCGTGGACTTCATCCAGCAGCAGGATCTTGTCCCTCATTCCCAACAGGCGGAGCGACTGGTGGCGAAAAGGCATCACCGCCATTAAGAGCTGATCCAGCGTACCTACGCCAACCTCCGCCAGCAGCGCTTTTTTGCGCGAATCGGCAAACCAGGCGTGACACTCGCTGGCCGCGTTGCCGTCATGATGCGCGTAATCTT # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //