Array 1 32-1578 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMSP02000017.1 Weizmannia coagulans strain MA-13 k141_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32 32 100.0 34 ................................ CGCTCATGCCGTAATCCTTGGCGATTTTGGTGAT 98 32 100.0 34 ................................ CCATCCGTAAAAATAGAGCAGGCCAACCACCTGC 164 32 100.0 35 ................................ GAATTGTCTCGCCGCCGGCCGCCGACAGCTGCGCC 231 32 100.0 34 ................................ TGCAAACATATTTGCAAGCGACATCGGTGTAAAA 297 32 100.0 34 ................................ CAGTCCCGGCTGTTAAACATAATGCCGGCCTCAT 363 32 100.0 33 ................................ ATATCAGTTGCAGCGGCCAAATATTCGTCTTTT 428 32 100.0 34 ................................ GCGGAGGCGTCTGTGTACCAAATGGAACCGTCCC 494 32 100.0 33 ................................ ACGAATACGACGAGGACGGAACATTAATAAAAG 559 32 100.0 36 ................................ ATTATGTTGCTGATCGTGTTTTTTAGTCCGTTAAAT 627 32 100.0 34 ................................ CATTGACAGCATGACAGCTATCAATTCGCAAGCG 693 32 100.0 33 ................................ ACAGTTCTATATTCTCGATTGGCGAATCCTTGG 758 32 100.0 34 ................................ GTATGGCACTGGCAAGTTTGGCATCACCGACAAA 824 32 100.0 33 ................................ TCCATACATTAATCAGGTCATATCAGCAGTTGT 889 32 100.0 33 ................................ CAGCTGATTAAGAAGACCGTGGGGGCCTTACCC 954 32 100.0 33 ................................ AACAGTTTGATCGAATCTGTATCACTATATACA 1019 32 100.0 33 ................................ ATGTATCGGATTGCCGCCACAGCATTTGCTACC 1084 32 100.0 33 ................................ ATAAACACCTGCAAGCGGATATGCTTCTTGCAA 1149 32 100.0 34 ................................ AGGATATTCATTCAACGCTTCTACAAACGCCTTA 1215 32 100.0 35 ................................ ATCTGCGTATAAGCCTTATTAATCGAAATTTCTCC 1282 32 100.0 33 ................................ CCTTTCTCCCTGCACACAGTCAATATGCTCCTG 1347 32 100.0 34 ................................ TTTGCGCTGCCTGTCATCCCTTTAACAAGACCTT 1413 32 100.0 34 ................................ CTTTTGATAAATGCATTGCACGACCGGATGAAGA 1479 32 100.0 34 ................................ GTGAATCCAAGAGGTAGATAAAGAAACCTATGCC 1545 32 81.2 0 ..........G.........A..A.A.A...C | G,A [1548,1560] ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.2 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : TCATGCCGTAATCCTTGGCGATTTTGGTGATG # Right flank : CAACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTACCCTTTGATGCAACGCTTGGCATTCCAGATGAAATTGAACAATTATTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAACCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCTCCTTCTCTTTTTTCTTTAGATCCAAAAAGAGGCGCAGATCGTGCAGGCAGCAGTGACAAACCCTCTTTATGAAATTGCCCTTGTTTTTATAGTCCCCGGAACCGGGTCCAGGGCTTTTGCTTATTCAGCAGCCCCCGATTATGTATTTTTGTCATCCTCATCGTCCAGTTCCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10022-8671 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMSP02000061.1 Weizmannia coagulans strain MA-13 k141_151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10021 32 100.0 34 ................................ CAACCTTTGCTCGGAAGTATTACAATACAGCGAT 9955 32 100.0 34 ................................ ACGCTTGATACCGAATAGGGCTGACGCTAAATAT 9889 32 100.0 34 ................................ CGCAAACAGTGTGAACGTGTTGGAGATTTGGCGT 9823 32 100.0 35 ................................ AGGGGGGCCAGAGGCTCATTGTCAAGGGCGCCCTG 9756 32 100.0 34 ................................ CTTTGGCATTTAAAAATGAGTCACAAGCGATACG 9690 32 100.0 34 ................................ CTTGCATTCAGGGCAAAGTTCGGAGAAATACCGG 9624 32 100.0 34 ................................ CGAAATAAAGAAATACTTCGGCGAGGGCGACGAC 9558 32 100.0 34 ................................ TCTATATCTTTTTTTGTAGTCATCTTTTTATCCC 9492 32 96.9 34 ...............................A TGCATCATCGATTGGCATAAGCCAGTCACTAATT 9426 32 100.0 33 ................................ AAAAATTCAAAACATGGTAAAACGGGAAGCCTA 9361 32 100.0 35 ................................ AGCGCTCGGCATACACCGACCGGCAAATGGCCGAC 9294 32 100.0 34 ................................ ACGTTTGGAGCGTGTACCGAGGCAGAAAAGAAAC 9228 32 100.0 35 ................................ ATTGAGCAAAGCGATAGCAAAGGCGTGCAGTTCTT 9161 32 100.0 34 ................................ CATTCGGAAATTGGATTAATTCTTTCCGGTTCGC 9095 32 100.0 33 ................................ ACAGATCGGCTTTTCGGCCGGCACGTTTGCTTT 9030 32 100.0 33 ................................ ATATTCTTCCAATTTAATAGGTAAATCATCACC 8965 32 100.0 34 ................................ ACGCAAAGTGGTTATACATCGGTTTCGATTCATT 8899 32 100.0 33 ................................ TCCAATCGCGGATACGGACGAGGACACGAATAA 8834 32 96.9 34 .......................A........ ACTCCGAAAGACCTTTAAACGCTTGAAAGATCTG 8768 32 96.9 34 .....................G.......... CAAACGGGTTATCGGTAAAATGGCTGACAGCGGC 8702 32 81.2 0 ............A.......AGAA.......A | ========== ====== ====== ====== ================================ =================================== ================== 21 32 98.7 34 GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Left flank : CAGGGCTTTACTTCAGTGCCACTCTTTGGTTTGGGTCAGACGCTTACCAGATACTTAAAACCTAACAGTGGAGAAGGTCCTTAGAATGATTAATTAGTTTTAATAGGATATTCAACATCTGTCGAATTAGACGCCGATGCTGAAATTAATCGTAGTAGTACTGATGACTTTTTGCAGCGGGAAACAGAGTAACACGATTTAGTTCATTTTATATAGTAGAAAAACAAAGATTAACCAGTCCAATTTATCTCGTAAGAACGATTAGTTATAAAAGTGGTTTTTTAACGTGCTGCTTTTTACGACATAGCAGTCTGTAATAAGAATGCTTTTTGGTGTAACTGTGCGAATGAATAGTGTACATGAATTTCCCAAGGGATTCGCACCAAAAATCCAATAGATTTTTCCATATAAAGGAATTTTCGTGTAGCAAAACTTGGGATAATATGGGGTAATTTGTAGATATTCGTCAAAATCTATTAAATTTCTACACGATAATAGCT # Right flank : AAATAAACGCAGCAGGAAACAATGGAACAGAGCCGAACAGTCACTTTACGCATGAAATAATTGTGAAAAAGGAGAGATCCGGGGGCGTAATCAGTGATATTCTATCCAAAGAATAAATTCGTTCGTTACGCGTGTCCCGGCGTTAAGGCGTCAAGCGTGAACCATGATTCGTTCGCAACCAGTTGTAAATAGTGAGTGTCAAGCAATTTGATATGCTCAAATCTAAGCAGCAAGCCCCCAGATCTCCTTTTCCTTGCCGGCATGAGATCCGGCGGCAAAAGGCGGAATCCAAGCTCCGCCCCTTGCCGCCGGGTCTCATGCCGGGTGTTTACTGGTACTCCTCTACAAAGTCCAGGTCAACCGCTGCGTTAAAATTGGCTTTATCAATCAGTATCGACAAACGGTTGGCTTCTTTTTCGGTTTTTTCAGCCTGCTTTTTAACCGCAGGGGGGTCAAACAGCGCTTTCTTGTAGACAACATTTGCGTCAAAAGCGCCTCTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 52270-52630 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMSP02000062.1 Weizmannia coagulans strain MA-13 k141_309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 52270 32 100.0 34 ................................ TTTAGCCGGCTGCGCCCCTCAGTCAAAAACTCAT 52336 32 100.0 34 ................................ TCTGTCAAAAAATTTATGTAATTACTAAGTATGC 52402 32 100.0 33 ................................ ATGATAGCAATGTCATGAGTACGGTCGCCATTA 52467 32 100.0 34 ................................ TTTAGCCGGCTGCGCCCCTCAGTCAAAAACTCAT 52533 32 100.0 34 ................................ AAAAGGTTAAGCGTGGCCATGTTCGGACACGCTT 52599 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 6 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAGATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCTGGGCAGAAAAGGCTGAGAAAAGTGGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTTCAGAATTCTGTCTTTGAATGCTATGTTGATGCAACTCAATTTGCATCTTTGAAGATTGAACTGTCTAATATTATTGATCCGGACGAAGATAGCTTGAGATTTTATCAGTTGGGGAATAACTATAAAAATAAAGTAATGCATATTGGGGCAAAACCATCTTTGGATTTAGAGGACCCTCTGATCTTTTAGTGCGAAGGTGTAGCACACACGATTTTCCAGTGAGTTCGCACCAAAATATAAACCAATATTTTACACATATTGATTTTATATGGAAAATAGTCCTTTGTTTTGTCAGAGGAAATAGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAGATTCCGCT # Right flank : CGCCCGGTATCAATTGCCGGGCTTTTTGTTATAAGTCGCTCCCTACATGGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //