Array 1 15507-18476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHBH010000053.1 Psychrobacter sp. H7-1 isolate Psychrobacter sp. H7-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15507 32 100.0 33 ................................ CATAACTGGCAGACCCACGAGGAATCGAACCTC 15572 32 100.0 33 ................................ CATGAATAGTATTAAAAAAGATATTGCGCTATT 15637 32 100.0 32 ................................ TGACCAAAAACTCGTTAGCGTGCTTATTGGCT 15701 32 100.0 34 ................................ TGTCTTGCTGGCTTTGGTGCTTTGTAGATTAGTG 15767 32 100.0 34 ................................ TAGGTCTGCCCTATACGGCCATTGAGTGTAAGTT 15833 32 100.0 34 ................................ ATTTACCGCGCTGACATCCATACTAGTCAAGAAG 15899 32 100.0 35 ................................ TATGTTGGCGGCTAGCTTGTCACTGAACTTATCAA 15966 32 100.0 32 ................................ GCTTTGGCCACCTAAATACTCGATAAGCTTGA 16030 32 100.0 33 ................................ AAAATCGCCATAATCACTAAAATCACCGTCTTG 16095 32 100.0 34 ................................ TCAAGTCTGCGAGCGACTATCTGATTGCGAGCAA 16161 32 100.0 34 ................................ CGAGCTGGAGGTGGTTTTAGCTCTAACATCTTTG 16227 32 100.0 33 ................................ ATGTCTACTGGTACAGCGTACGCAGCAAGGAGT 16292 32 100.0 33 ................................ CCACAAATCGGCGACAGCGAGGCGGTTATTAAG 16357 32 100.0 33 ................................ ACCTCTCCTTTTTTAAGATAATAAAAGTGCTTT 16422 32 100.0 33 ................................ TTTTGCGTTGATTAGGATTGTCATGATGTTTAC 16487 32 100.0 34 ................................ TTATAGTCGACAACCAGCCGTACAGCCACCAGCA 16553 32 100.0 33 ................................ TAAAGGGTAGGGGTTTACCCATAACATTGATAA 16618 32 100.0 32 ................................ TTGATTTAAGGCAAAACACAAAGCAAAAGATA 16682 32 100.0 32 ................................ AAAAAAGGTGGCGACTCAGATAGACGAAGAAA 16746 32 100.0 33 ................................ CACCGCAGAAGAAGCCGCGCAAATAGCAACCGA 16811 32 100.0 33 ................................ CTTTCTAGCTAATTACCGAGCGTGGCGGGCTAA 16876 32 100.0 35 ................................ ATATCAGAAATGCTTTACTCAGAAAACCTGTACAA 16943 32 100.0 32 ................................ AGGCAGTGACAAGCCATTAACGATTGGTGAGG 17007 32 100.0 33 ................................ AATGCCATTGATTTTGGTACAGACGTTAAGCCG 17072 32 100.0 33 ................................ ATCACAATCTAAATCATCATTAGTAGCTATACT 17137 32 100.0 34 ................................ GTAAACAGAGCGGTAATGAGGTAAGCAAGGCCAC 17203 32 100.0 34 ................................ TGGCATTGACTCAACAAATCTTGAGTAATGACCC 17269 32 100.0 34 ................................ CCGGAAGCTCCTCGTAATAGTCTTTAGGGCATTT 17335 32 100.0 32 ................................ TTGATTTAAAGCAAAACACAAAGCAAAAGATA 17399 32 100.0 32 ................................ ATACTGGCTGTGCTGCTCCATGTGAAAAAACC 17463 32 100.0 33 ................................ GTATCTACTGGCACGGCGTAATGTTCAAACCCG 17528 32 100.0 34 ................................ AAAGGTTTAACCGCATTGGCCAGAATGCTTGGAA 17594 32 100.0 33 ................................ GTATGCAAGTGCGCCGTCTTTGATAGTGGGCTT 17659 32 100.0 34 ................................ TGTTAGATTTTACGACTTAGTTTGCGATATGGAT 17725 32 100.0 34 ................................ TGAAATGCTACCAAAAGCTGAAGGCGAAGACATG 17791 32 100.0 35 ................................ GCTAGTTTAATCTTCATAGGATTACCTTTCCTCTC 17858 32 100.0 33 ................................ AAGTCCTTCATGGCACGCCAATTATGGAAGTGT 17923 32 100.0 32 ................................ TCAACTCTTTAATAGTATTTTCAATCGCTATA 17987 32 100.0 34 ................................ ACTGGTTGGTTAAACGAAGAGGTGAGGCGATAGC 18053 32 100.0 32 ................................ GGAGAGTGGGCACGAGATCATAAAGACGATTT 18117 32 100.0 34 ................................ AATACATGGCAAAGGGCGCGGGATTAAGGCAAGT 18183 32 100.0 34 ................................ AAGTTAAATGCTATCTGAGCGTCACGAGATAAGC 18249 32 100.0 33 ................................ ACCTAGTGTTAGGGTAAGTAGTCCGTCGTTAGC 18314 32 100.0 33 ................................ TAATAACTCGAAGCGTTCAAGCTCTGGCAACTC 18379 32 100.0 34 ................................ ACTACTAATAGCGGCGGTATTACCGTCGCTTTGA 18445 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 46 32 100.0 33 TTCGCGTCCATCACGGGCGTGTGGATTGAAAC # Left flank : GCGTCACGTTGCCAAGCACTGCTTGAATTATGGGCAGAGGGTGCAGTATTCGGTGTTTGAAATCGAGGTCAATCCTGCTCAGTGGACGACACTGAAGGCAACGCTTGAGGGTATTATTAATCATGATGTGGATAGTTTACGTTATTATTATCTTGGCAAAAACTGGCAAAATAAAGTAGAACACGTCGGGGCAAAACCTGTGTTAGACTTAAACGATGTGCTGCTATTTTAGCCGCTATAATCAGCGCCAAAAGCTATTAATAAACGATAAAAGCTATTATTTGACTGCAAAAAGATCAATGCGAACCTATAGCAGACATAAAATCCCTAGGAGACTCGCAATAGTCTCGCCACACTATTTAACAACTTGATTTTAATGACTTTATTTTATTGTAATAAAACTTTGGTAAGCGCGATGCTTGCCAAATTCGCCTACAGTTTAGACGTTCGCAAATACCAAGGTTTTTTCTTAACCTTATTAGCGACTTAGACTAGGGGCT # Right flank : CTGTAGTAACCTCTACCATGTCAAAGTCGCTCGACCAAAATGCTTATTGTGATAATATCTTACATTCATTGACCTTTATGGCCTGTAGATATTATACAATTGAATAATCACAATGTAAGTTATAATGTAATAAAATTTAACTCGTATTTGGGCACTGTATTTTTATAGTGTTTTTACCTCTACTCAAGCCCTTCTCAGAACAAAAAAACTATGTTTGTTCGTTGAGAATCTATTCTTATTACGTCTGCTATTGTCGTTTTTGAATTTCTACGTATTGTTTCTACTGCTTATTCTCTGCATAATATAAGGAGATTACTGTTATAATCTCTGCATATCTCTGGGGAACGTATGAAGCATACTACTTATATTCATGAGCACTCAAATTGGACTGAATGGCAATGGTCGGACAAGAAGCTATTGCCATTCGTCAGTCGTGTGCGGATATTACAAGGCCATTTATTAGGAAAGCTACTAACACTAGGGTTCGATCTGAATGTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCGTCCATCACGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4012-1155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHBH010000079.1 Psychrobacter sp. H7-1 isolate Psychrobacter sp. H7-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4011 28 100.0 32 ............................ TACCTGCTATCATATCCCAAAATATAAAGCGT 3951 28 100.0 32 ............................ TAATAAACCAAAAAGGAATAAAACTAATGTTA 3891 28 100.0 33 ............................ AATTAAGTTAGATGTCATAGGATTATGCTGTGA 3830 28 100.0 32 ............................ ACCTATTGCATTATATAACCTTACATTACGTT 3770 28 100.0 32 ............................ TTAGCTGATGACTATGGGCAGACTGTAGATGA 3710 28 100.0 33 ............................ ATTAATCAAAGCTAAAAAAGCTTTTTGAGTTAT 3649 28 100.0 33 ............................ TAATGAAAAATTTTAACTTAGTATTATCTGTAA 3588 28 100.0 33 ............................ TTGGCGCAATCCTTGGATAGCTCAGCTGCCGTT 3527 28 100.0 32 ............................ TACAAATACGCCTGCGAATATCACGCAAAAAC 3467 28 100.0 32 ............................ TAAAGCCGTGGGTTACCATTTGGCCGCCATAA 3407 28 100.0 32 ............................ TAATCACGCCACAGCTAACACAGACACACATG 3347 28 100.0 32 ............................ TCGCCCTGCATCTGAGTCAGCAAGCCATAACG 3287 28 100.0 32 ............................ AATCATCCAACACTTGACTTAATGATATTTGC 3227 28 100.0 32 ............................ TTGAATACATTCCTTGAATACATTCCTTGAAT 3167 28 100.0 32 ............................ TTACTGGTATGCAAGTAAGATAGGCATTAAAT 3107 28 100.0 32 ............................ AGTTTGTTAGACCTTGCAAGAAAATAAAACAG 3047 28 100.0 33 ............................ ACAACTTTAAACTTGAACGGGTTGATAGTGTTA 2986 28 100.0 32 ............................ GTACTGAAAAGTCTGGGGAATAGCCACGGTGT 2926 28 100.0 33 ............................ GCATTTATCGAGCGCGGGATTATCGGTTGGTGT 2865 28 100.0 32 ............................ GTGAGATTTACGGCAATGTCTGGCAAGAGCGC 2805 28 100.0 33 ............................ ATCTCGCCGTTTGGTCGCATCATCTTGCGCACT 2744 28 100.0 32 ............................ ATTCAGTGGATTGACCGGCTCCCCTGCTAACA 2684 28 100.0 32 ............................ GCTCAAAACTTTAACCAATAAAGATACAACAT 2624 28 100.0 32 ............................ AGACAATTAGGCTTAACTTTTAAACAACAACA 2564 28 100.0 32 ............................ TATATATAAGGCAAGTTATCTGGCTACACACT 2504 28 100.0 32 ............................ TCGTGAAAAATCATATTACACAAAGAGACACA 2444 28 100.0 32 ............................ TATACCGCCTTAATGATACCTATTCTATAGTA 2384 28 100.0 33 ............................ TTGAAACAGAGAGTTACAGTATTGCTTTAAGTA 2323 28 100.0 32 ............................ CATATAAGATGCGGTGTTTATTTCATCATCAT 2263 28 100.0 32 ............................ TTGAAACAGAGAGTTACAGTATTGCTTTAAGT 2203 28 100.0 32 ............................ TTAAAAGGTTGGGACGGTTATTCAAGTGGCAG 2143 28 100.0 33 ............................ TCATGAAAAATCATATTACACAAAGAGACACAA 2082 28 100.0 32 ............................ TTAAAAGGTTGGGACGGTTATTCAAGTGGCAG 2022 28 100.0 32 ............................ ATCCCAAATTAGCACACCTGCCCATGTTGGAT 1962 28 100.0 32 ............................ GTAGCAAGTCGGACAGACGCAAGGCGATTGAC 1902 28 100.0 32 ............................ TATTCGACTGGATTGCAGTTGGCAGACCCTCA 1842 28 100.0 32 ............................ ATGATTGCCTAGCAACTCGTTACGCCCCAACC 1782 28 100.0 32 ............................ GCTACAACCGAGCGTTAGAGTTAGGTATCGCC 1722 28 100.0 32 ............................ ACGGTGTTGGCGCTAGCCCGGATAGATTAGTT 1662 28 100.0 32 ............................ TCGTCAAAGTGCCAAGTCTTAAAGCTATCAAA 1602 28 100.0 32 ............................ CCATAGATTTGGCAGTAATCAGAGTTGCAGGG 1542 28 100.0 32 ............................ GCAGAGCGTAAAAGCCCTTAAAACAGAGCTAT 1482 28 100.0 32 ............................ ATTCAGCATGAGCCTCAAAAGTTCCATGCTGT 1422 28 100.0 32 ............................ TGTGCCAGTCGCACCTAGAAGCAATGTGTGAC 1362 28 100.0 32 ............................ TATCAAAGCCCCTATAGCCTGTAACTATTGAG 1302 28 100.0 32 ............................ ATAACGTTTAGCTCGCCTTGCGTGTAAACAGG 1242 28 100.0 32 ............................ TTCCGCACCTGTTGGCTTGACGGCTACAGGTC 1182 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 32 CTTCCTCACCGCATAGGTGACTTAGAAA # Left flank : AATCAGACTAGGATTCAAAAGGGTTTAGGCTATAAATCGCCAAGACAGGTGTGGTTTGATTATTATCGTCAGGCTGCGTAATCAAAATCTCCCAAGTTTATATATACGGGATTGACGGCAGGGGTCAGAAAGTTAATCAAAGCTAAAAAAGCTTTTTGAGTT # Right flank : TTTCTAACAATGCTTCCGTACTCATTGACCTCTGCTGTCAACAACGGAGAAAAACATTTGGTAGATTTCATCAGGCAGCCTGACGGTAAAAGTCTTGGAATACTTGAGTAGGTGACTTAAATCCTAACCCTTTTTGTATTCGTTGACGGTTGTAAAAAATCTCAATATATCTAACCACATCCTTAATGGCTTCATCACGAGTCTCATAGACTTTGTGATAAATCAGCTCGTTTTTTAACTGACCCCAGAAGCTTTCAATCGGGGCGTTATCGTAGCAATTGCCTTTTCGGCTCATAGAGCCAGCAAAACCATACTTGTCGATGATTTGGCGGTATTGATGGCTACAATACTGACTACCCCTGTCAGAATGCACGATTAAGCCCCGAGCAGGGCGTTTGTACTTAATGGCATTGTTTAAAGCCTCACAAACCAAATCAGCGGTCATACGCTTATTTAGAGCATATCCCACAATCTCTTTGCTGTACAAGTCTTTGAACGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCACCGCATAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12935-18622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHBH010000056.1 Psychrobacter sp. H7-1 isolate Psychrobacter sp. H7-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12935 28 100.0 32 ............................ TTGCAAGAATTTAAATAAAGCACTTAATAATA 12995 28 100.0 32 ............................ TGCTATGTTTGTACTTGATAAAGATAGAGGTA 13055 28 100.0 34 ............................ GATAACGGCGTGCTTCTTTTACGGCCATATATTG 13117 28 100.0 33 ............................ GGCACGCAAAGCGCTTCGATTTTTGAGTCTTTT 13178 28 100.0 32 ............................ ATTAACAAACGCATTGCTAAGTACCTGCTAGG 13238 28 100.0 32 ............................ AGCGACTCTAAATGCTTGTTGAGCTGATCGTA 13298 28 100.0 32 ............................ ATTCGGCGTCGTCTGAGTCGTTGATAGCGATT 13358 28 100.0 32 ............................ ACAGGTCTATCGTACTGCTTAGTCCAACTCTC 13418 28 100.0 33 ............................ CTATAGGAGCGGCTATGCGAACAGTAACGATAT 13479 28 100.0 32 ............................ AGTACTTTAAGAACAAGTGGCTTAAATCAGTT 13539 28 100.0 32 ............................ TCTGCAAGTGTCTTTTGCGTGTCTGCCTTGTT 13599 28 100.0 32 ............................ AACCTGAAAGCCGTAAGCGGTCACTAGCGCAA 13659 28 100.0 32 ............................ TAATCACGCCACAGCTAACACAGACACACATA 13719 28 100.0 33 ............................ TGCCAAAGTGGTTTATGCGCTTGGTAAAAACTC 13780 28 100.0 33 ............................ GCAGTGTAGGCAGTGCAACGGGTGGGACATGGA 13841 28 100.0 32 ............................ AGAGACCTCGGCATCACTGACAGAAGTGTCAG 13901 28 100.0 32 ............................ AAGAGCCGAACGCCATTGCAAGCTATGAGAAT 13961 28 100.0 32 ............................ CACCCATGTGCCGAAAAGCAGTGACACTAAAA 14021 28 100.0 33 ............................ AACAGAAGTCTAAGACTGCTAAACTCAGTATTT 14082 28 100.0 32 ............................ TGAGCAAGAGCAGCTAGAAAACCTATCAGAAT 14142 28 100.0 32 ............................ ATTACCGCGTCAGTATGTTCGTCTGTTTTGTC 14202 28 100.0 32 ............................ AAAAATGGTGGAGATGGCGGCTACCGTATCAT 14262 28 100.0 32 ............................ TTTGCACTGTTGTTTCTACAGCGATGCGAAAT 14322 28 100.0 32 ............................ ACAAAGCTACTTAGAGAAGCCGAGCTTGGCTT 14382 28 100.0 32 ............................ TTGTGGGGTGCTCGCCTACCCCTTGAAACCCT 14442 28 100.0 32 ............................ GCAAAGTGTCGTTTAATGGCAAAGATGCTGTG 14502 28 100.0 32 ............................ CAAGAGGCTCCATCCCAGCGTTTAGGTGTATT 14562 28 100.0 32 ............................ TAACGCAAGCGAGCTATACATTAAGCCCGAGT 14622 28 100.0 33 ............................ CAACTCAGGCAACGTATCTTGCGGCCGAATTTT 14683 28 100.0 32 ............................ TCATAACTAAAATTTGTAAATATCTATTAAAA 14743 28 100.0 33 ............................ CGTGCGCGTGGTTGCGCCACACGGGGTTAGCTC 14804 28 100.0 33 ............................ AGACATGGTAATGGATTTTACCAACCTACAGTT 14865 28 100.0 32 ............................ GAGCGCATCAAGCAGTTCGTACATTTCCTCAA 14925 28 100.0 32 ............................ TTTACGCCTTGCTCAGTGTTAACTTTGAACGA 14985 28 100.0 32 ............................ TAACGATGAGAGCCAGCCGTCAAACTTCTCTT 15045 28 100.0 32 ............................ ATCACCAAATGGGGCGTACTCCTTTGACTTTC 15105 28 100.0 32 ............................ ATTAAGAGGTAGTGAGCTGACCAAGAAGCTGC 15165 28 100.0 32 ............................ GTCTGTAGATATAAGTTGCATGTATAGCGAGG 15225 28 100.0 32 ............................ TGCACCGCCCGTCACCGGTATACCTGCGCAAT 15285 28 100.0 32 ............................ ATTCCAAAGAGCGTCATATGTTGCAATCTTTT 15345 28 100.0 32 ............................ CGAGCCAACGTTATAAACGGCGAGTTTGTTAA 15405 28 100.0 32 ............................ TAATAAAAGGTAGTAGTGGAGTATATACGGCA 15465 28 100.0 32 ............................ ATGGGTTTGGATGGTGCATTACCAAGCGTCGG 15525 28 100.0 32 ............................ TAATAAAAGGTAGTAGTGGAGTATATACGGCA 15585 28 100.0 32 ............................ AGCCATTGCGGAGAGAGACGAAAAGCACCGCA 15645 28 100.0 32 ............................ ACCATGATTAGATAGCATCAGCTTTGCGATAG 15705 28 100.0 32 ............................ CCAAACGACACTGCAAAGCCGTGCTTCTCAAG 15765 28 100.0 33 ............................ ATTCTAACCAATTACCGAGCGTGGCGGGCTAAT 15826 28 100.0 32 ............................ ATCTATCTTGATTGGTAAAAATGCACTAGGCG 15886 28 100.0 32 ............................ ACTCACACTTAAATCCAGTCCAACCAGCTAAC 15946 28 100.0 32 ............................ ACCTAGGAGTGGTAAGAGTGAGCAGGTATCAA 16006 28 100.0 32 ............................ TAGTCAAAGGAGTGAAGTTTACCGGCGATAAG 16066 28 100.0 32 ............................ TCTAGAGACTCCTCGTAAGCTACTGCGCTTGC 16126 28 100.0 32 ............................ TGTGTATTGCTCTGTGATTTTTTCAATCATGT 16186 28 100.0 32 ............................ TATAAGTTAGCCAAAGCACTTTATCCAAAAAA 16246 28 100.0 33 ............................ GCCTTACCTTTTGGGTTCTTATATGTTGGTCTA 16307 28 100.0 32 ............................ ATCTATAAAATACTGTTTGACTATATTTTTAT 16367 28 100.0 33 ............................ CGCAAAATAACGTAAATCCGGCTTGGCTCGCTT 16428 28 100.0 32 ............................ AGATAGTAATGCAAAAATACTGAGTTATAAGC 16488 28 96.4 32 A........................... CGAAGTATGTGATGAGCACAGAAAAGGGACGG 16548 28 100.0 32 ............................ ATTTCTTCTTCTTGGCTACCCAAGTTCAACCT 16608 28 100.0 32 ............................ TTGCTGTCCCCTTATGCGTAAACTTCGCTGTA 16668 28 100.0 32 ............................ AGCCATTGCGGAGAGAGACGAAAAGCACCGCA 16728 28 100.0 32 ............................ ACCATGATTAGATAGCATCAGCTTTGCGATAG 16788 28 100.0 32 ............................ CCAAACGACACTGCAAAGCCGTGCTTCTCAAG 16848 28 100.0 33 ............................ ATTCTAACCAATTACCGAGCGTGGCGGGCTAAT 16909 28 100.0 32 ............................ CAATTGGGTAGCATCTAACTCATAGAGCGTAA 16969 28 100.0 32 ............................ CATTCCAAAATGCCATACCGCGGAAAATACCG 17029 28 100.0 32 ............................ TTTAGCTAAAAACGTGATGGAATTGCACATTA 17089 28 100.0 32 ............................ TTGATGTTGGTACTAAAGCGATTACAGAGCTA 17149 28 100.0 32 ............................ TCGATAGGTGTTTCGTGACTCGATAGTCATAC 17209 28 100.0 32 ............................ TTGCCAGTTATTTTAACTGTTATTCCGTCCGA 17269 28 100.0 32 ............................ TACCAAAGCATTTTCATAAGCCATTGATAAAG 17329 28 100.0 33 ............................ TATGATGTGGGCTTATGGCTTATATAATATTAT 17390 28 100.0 32 ............................ AAGTGGAATTAATTAAGTTATAACCTAAATAG 17450 28 100.0 32 ............................ TCAGATTAAAAGTGGTGATTTATCACTATATA 17510 28 100.0 33 ............................ TACATAACCTTTTATAGCTTTTTATAGTTTTGT 17571 28 100.0 32 ............................ CTTTATTTTAAAGGGGTGAAACTTGATAATGC 17631 28 100.0 32 ............................ TTAACTGTTTCCTTGTTTCATTGTAAGCATTC 17691 28 100.0 32 ............................ AATACTAGGCAAATTACTGGCTGTTATTACTG 17751 28 100.0 32 ............................ TATGACATCTAATTCAATCGGCTCGCCTAGGT 17811 28 100.0 33 ............................ AATGAAAAATCATATCACACAAAGAGACACAAA 17872 28 100.0 32 ............................ TTAATAGCTTAGCCGATGACCTAGGCGAGCCG 17932 28 100.0 32 ............................ TATATTTGAAGGAGATGTTGTAGAGGGAATAT 17992 28 100.0 32 ............................ TATATAAAGCCAAGTTATCTGGCTACACACTA 18052 28 100.0 32 ............................ TATATAATCCCTTTTTGTTAGCAATCATTATC 18112 28 100.0 32 ............................ AATATATAAAGCCAAGTTATCTGGCTACACAC 18172 28 100.0 32 ............................ TTTGAAAGGCATTGATATAGAATACTGGGATG 18232 28 100.0 32 ............................ TGCTAAAGCATTTTCATAAGCCATTGATAAAG 18292 28 100.0 32 ............................ AGTAAAGGCTTTTATTTTACCTTTTAACGGCT 18352 28 100.0 33 ............................ TTAAATAATAGTAGTGATAATAGACAATGTTAG 18413 28 100.0 33 ............................ TTGAAACAAAAAGTTATAGCCTTGAGTTAACTA 18474 28 100.0 32 ............................ CAATAGCATATAATGCAGGTCGTGATGGCTGG 18534 28 100.0 33 ............................ ATATATTTATACATTAATTAATTAACTATTAAA 18595 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================== ================== 95 28 99.9 32 CTTCCTCACCGCATAGGTGACTTAGAAA # Left flank : ACATGTGAAGCGCATCAATGAGGTTGGTGACAAAGCCAAAGGGCACGTTGTGATCAGACGCTACCGCCATAAAAACGTGCTCAAGCAAGCTGAAGCATTCGCTGAGCACAAAGGCATTACGCTGGAGGCGGCACTGATACACTGCGCCAAACACAAGCAGGATAACAAACCCTATCCTTATATCAACTTAAGGAGCCTCAGCAACAATCAACCCTACGCATTATCTATCATTCAAGAAATGGCAGATAATGAGACTCAAGGGTCGTTTAACAGCTATGGCATTAACAATGCGGCAGATAAGGTTACTGTGCCCCATTGGTAAGCTACTTATAAGGTAATGACGAATTACCCAAAAATCGGGACAAAAAACCCTTTTTTTGAGCTATTTAAAAACTTGTAATAAAATCAATCAGTTACATTAGGGCGAAAAACGGAGGGTAAAATAGGGTGTTTCACTCTCCACGCCTTGTTGTAACTGAGTTTTTTGAGGTATAATTCCT # Right flank : GAGCTATGCTGAAGAAACCGTACAAGTAAACTTGGTAAACTAAGCATATTAATCGGAGCTTATCATGGTCAAGAAAATAAGAACCTATAGCACAGAATTTAAAGCTGAAGCCGTTAAGAAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCACCGCATAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //