Array 1 2238194-2239682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029686.1 Lacticaseibacillus paracasei strain Lpc10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2238194 36 100.0 30 .................................... ATTTGTTGGTGCAGACATCTCCACAATCAT 2238260 36 100.0 30 .................................... TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC 2238326 36 100.0 30 .................................... ACCAATCGTAGTAACTCTTAGCGTTAGTGT 2238392 36 100.0 30 .................................... CTTAAGTTTTGTCATCAGCACTGACCAGCC 2238458 36 100.0 30 .................................... CGAGTCGGCACGGATTCAACATGCGGCACA 2238524 36 100.0 30 .................................... ATACAAAAAAAATCATACAGCCTGCATCAC 2238590 36 100.0 30 .................................... CGGCATTGCCTCGGCGCATGGCTGGGGTGC 2238656 36 100.0 30 .................................... CTAAACGTTCGCGAACCTCATTCAAGCTAA 2238722 36 100.0 30 .................................... ATGGATGATGCATTTGATCGACAGTGGCCC 2238788 36 100.0 30 .................................... GTGTTAGACTTAGATGTGGATGTTGCCCCG 2238854 36 100.0 30 .................................... CCCTTTCGCCGCCATCTTTGATCGCCCACG 2238920 36 100.0 30 .................................... GCTATCTGGCTTGAATTCCTTAATCGATTT 2238986 36 100.0 30 .................................... AAGCCGATGATATAAAGAAAGACGCCCCTT 2239052 36 100.0 30 .................................... GAGGCTTACCCCGTCTTTACCAGTTGGTCC 2239118 36 97.2 30 ..............C..................... TTGTTCATAGCAGCGTTGGCACGGGTATTG 2239184 36 100.0 30 .................................... ATGAAAGCCAGCGAAGGCACATTTTTTACT 2239250 36 100.0 30 .................................... CGTGTTATTGTAATTAGTCGCCAAGTCTTG 2239316 36 100.0 30 .................................... GCTGTCAAGTATCTCATGTCCTTCTAGAAA 2239382 36 100.0 30 .................................... AACGTTGACCGCTCTGTCTCACGAAACTGG 2239448 36 100.0 30 .................................... GAACTTTGTATCGTTTCTCTTTGCGCACGG 2239514 36 100.0 30 .................................... ACGTTAAACGTACACCATGCCGCACAGTCC 2239580 36 100.0 30 .................................... GACGATCTCGCACATGCTCAGTGATATGCG 2239646 36 91.7 0 ..........................T..A....C. | T [2239678] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA # Right flank : CCATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //