Array 1 505697-508376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBS01000003.1 Listeria monocytogenes strain ICDC_LM0915 LM0915Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 505697 36 100.0 30 .................................... AAAAGAGGTTCGGTCGAATACAGATTATTA 505763 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 505829 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 505895 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 505961 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 506027 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 506093 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 506159 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 506225 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 506292 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 506358 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 506424 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 506490 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 506556 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 506622 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 506688 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 506754 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 506820 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 506886 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 506952 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 507018 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 507084 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 507150 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 507216 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 507282 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 507348 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 507414 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 507480 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 507546 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 507612 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 507678 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 507744 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 507810 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 507876 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 507942 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 508008 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 508074 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 508140 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 508206 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 508272 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 508338 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [508363,508369,508372] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //