Array 1 40588-38891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYW010000004.1 Corynebacterium diphtheriae isolate YEM0073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40587 29 100.0 32 ............................. CGCGGGTAACGAGTTCCTTTTCTGCCATGACA 40526 29 100.0 32 ............................. GATCAAATGGACGTTCTATGGTAGGGGTTTCT 40465 29 100.0 32 ............................. AAAACCTGTTTTGGTTGTGCAGTCCCCGAACA 40404 29 100.0 32 ............................. AATGGATCGTTCATCCCATTCATAGCCTTCTC 40343 29 100.0 32 ............................. CTTTGCCTGGCTGCTGATGATGCTGGGGGAGA 40282 29 100.0 32 ............................. GGGATCTATAAACCACTAGTAGTCAACCGTGG 40221 29 100.0 32 ............................. CTTTGCCTGGCTGCTGATGATGCTGGGGGAGA 40160 29 100.0 32 ............................. GGGATCTATAAACCACTAGTAGTCAACCGTGG 40099 29 96.6 32 ............................T CCCTACAGATGAGCTCGACCAATGCCGTGGCA 40037 27 93.1 0 ...........................-- - Deletion [40011] 40015 27 82.8 32 --GAG........................ TCAAAAAATCCGATGACAGGTTCGGGATACAG 39956 29 100.0 32 ............................. CAGCTATTACTTTTGCTGAACTGGGGACAACC 39895 29 96.6 32 ............................G ATAAGTGGTTGGTGAGGTCTCTAAATCATCTT 39834 29 96.6 32 ............................G ACCAGGCAGAAGCCGTAAAAAAGCTAGCAGAA 39773 29 100.0 32 ............................. ACCCCACGGGTGCGGGTATCACCTAGTACACG 39712 29 100.0 32 ............................. CGTGGCGGGCCCGTCTTTGAGGAAGTTTTTTG 39651 29 96.6 32 ............................G CGCGTCACCTTAAGCTCCTCCTCATCGAGGTT 39590 29 96.6 32 ............................G ACGGGTGGTGTGGGGTATTTTTTTCACCCCAC 39529 29 96.6 32 ............................T CACCACATTGCCCTCATAACTGGATTGCTCTA 39468 29 96.6 32 ............................G GTTAGTTCCGCCCAGTCTCGTCACCCCACGCC 39407 29 100.0 32 ............................. GCTAGACCACCGCCCGTGTTGTAGATGCGGAG 39346 29 96.6 32 ............................G CCCTAGGATCTCACTCTTGTTGTGGGTGTGTG 39285 29 100.0 32 ............................. CCACGAAGGGTCTGATGACAAGACCACAAAAG 39224 29 96.6 32 ............................G TGCAGTGATGAAGTCTAGAAGGCAGGAATTAC 39163 29 96.6 32 ............................G CCGCAAAGATCGCTAAATCTAAGGCGCTGACC 39102 29 96.6 32 ............................G CTCCGTCTCGAACTGGCGTTTTAGCCCGCGAA 39041 29 96.6 33 ............................G TAACACACACGGGAAAGGGGAACAATGAATGCG 38979 29 96.6 32 ............................G ACGACCGTGGGAACCGCGAGGATAAATAGCAG 38918 28 96.6 0 ........-.................... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.5 31 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //