Array 1 17495-11136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPS01000044.1 Methanosarcina mazei strain 3.H.A.2.8 scaffold7_1_size60060-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17494 37 100.0 34 ..................................... GGATGCCCTGCAAATATCCGGTGACCGGGATTCC 17423 37 100.0 36 ..................................... CGTCTTTCATTCAGGAGTTCCGTTAGATTCGTGTTT 17350 37 100.0 36 ..................................... CACAGTTGCAAAGTAATGCAACTTGTGCGGGAATTG 17277 37 100.0 37 ..................................... ATTGACAGAGCAACCGATTCAATCAATGGAGAGCCGT 17203 37 100.0 35 ..................................... ATCGGCTCTGGATACTCAGACCAGCAGAAAAACTG 17131 37 100.0 34 ..................................... AGAAGAATGAAATCCACAAGTTCGACCCTAAAAA 17060 37 100.0 36 ..................................... ACAGCAATGCACGCCGCAAAACAGAAATTAATTTAA 16987 37 100.0 35 ..................................... TTCCCTTGTATAGCTCACGCGGGAACCGTAGAAAC 16915 37 100.0 37 ..................................... TAAACACCGTAAATAATTTGCTCCGGTGCGTATACTT 16841 37 100.0 36 ..................................... TTGATCCTTGCCCCTGCTGTGCTCCCTTTCATGCTT 16768 37 100.0 36 ..................................... TTATTCCCTTCTTATTTAGAATGTTAAAGAGTCATG 16695 37 100.0 37 ..................................... ATATATAGACTCGATTTTGTCGGGTATTCGTTTGCAA 16621 37 100.0 35 ..................................... AGTCGCATTTAGTAACTTCTCGGTTTTTTTCACAT 16549 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 16473 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 16401 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 16329 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 16256 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 16183 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 16109 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 16038 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 15966 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTTATCTTGA 15894 37 100.0 35 ..................................... AACCATTCGATATCCCTATGATACGTCTCTGAATA 15822 37 100.0 35 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGA 15750 37 100.0 34 ..................................... AGGGTTTCAGAGGTCATTTTCACACCTCTACAAA 15679 37 100.0 35 ..................................... TAATGAATGCTCGTAAGGTTCTCAGGAGCAACATA 15607 37 100.0 35 ..................................... TAATAACACAATTCGGAGCAGTGGTATAGGCGGCA 15535 37 100.0 37 ..................................... TTAACTGCTTTTGAATCAATCGCGGAATCGCTTAAGA 15461 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 15390 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 15318 37 100.0 35 ..................................... AAAAGAGTCTGACACCATAGATTTCCATAAAACGG 15246 37 100.0 36 ..................................... AAAGTTAGGAAGGCAGGGTATCAAGAACTGGTCTAA 15173 37 100.0 35 ..................................... CTCACTGTTCCCACGCTCCTGTTTTGGCGTTATAT 15101 37 100.0 34 ..................................... CTACATCTGTGCCAGCCTCCCCGATTGTGATTGT 15030 37 100.0 38 ..................................... ACTGTACTGTCCTCCCTCCCTTGCCTCTTTTTGTAGGA 14955 37 100.0 36 ..................................... GTAAGTATCATGCTTTCAGGGAACAATTCTACCGCT 14882 37 100.0 35 ..................................... TAAATCAAAAAATCAGAAAACGAGGACAGTATGAA 14810 37 100.0 36 ..................................... TTTGTCATTTTTTGTGACTTCCTTAAACTCAAACTT 14737 37 100.0 37 ..................................... ACAAGGGACTCCCATTCGTCTGAACCCCCATACGTAT 14663 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 14591 37 100.0 35 ..................................... GAAGACTCCGAGCAAGTGCCCCAGATGAAGGACGT 14519 37 100.0 35 ..................................... GGATACCCGTATCTGTTTCATATCCAGGCTCTCCG 14447 37 100.0 35 ..................................... TGCTTTGGTCCCGTACATAGCTATCTTGGCTATTG 14375 37 100.0 35 ..................................... CTTCTAGTATTTTCACCTTGTTTCTCAGCGCATTT 14303 37 100.0 34 ..................................... AAAAACGGGCAGAATAATAATACACTAGCGTATC 14232 37 100.0 37 ..................................... TGCGAGTGGGAACCAGGTGCGGAGAAGTCACCGGATA 14158 37 100.0 36 ..................................... TAAAAAATTAAGAACGTTGTCATTTTTGCGTTGTCT 14085 37 100.0 37 ..................................... GAGGCTGGAGAGCTCGGATATGTCAGCGATACCAATA 14011 37 100.0 36 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACCGC 13938 37 100.0 37 ..................................... TTTTTGATTTTTCTTCCGGCATGAAATCCTTGATCTC 13864 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 13790 37 100.0 37 ..................................... AGAGTCTCCCAATAAGGTCGTCTTTGTGCCAACGAGT 13716 37 100.0 36 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTT 13643 37 100.0 36 ..................................... TTAGGGTATTACAGAGCGTCTATTATATTCTCACTT 13570 37 100.0 35 ..................................... GCTTCAAGGTTATTGCCCGAGTTCGAAGGGTGTAA 13498 37 100.0 35 ..................................... CTGATTTCTTGCGGGACTTTGGGAAGCCGGAAAAA 13426 37 100.0 35 ..................................... TCTCAAACAGACCTATACACCTTCAACCGATCCAA 13354 37 100.0 34 ..................................... TTAACGACCCAAAAAACAAAGCAGGACCAAAAAG 13283 37 100.0 35 ..................................... ACCACCTTAAACAAAAACTATATATAATATGTGTT 13211 37 100.0 34 ..................................... CATTCACCGTAAAAAGATTGCCTGTGCCGGTATC 13140 37 100.0 38 ..................................... AGTATTCATGACGGGCTGCTGAAATCTGATTACACTCT 13065 37 100.0 37 ..................................... ATACTCAAAAATCCAAACATAAAAAGCTCAAGAAAAC 12991 37 100.0 35 ..................................... CAGTTTTGAGTTCAGCTTTTGCAGAATCGAGTTCA 12919 37 100.0 35 ..................................... CTGTCATATTCGATGTCGTGGATAGTCGCTTTCAC 12847 37 100.0 34 ..................................... ACAAATTACCATCTGCTACAATAACTAAACCCAA 12776 37 100.0 35 ..................................... TTGTAGCCTCTAAAGCAGTACCGAGAGGTGCGAAT 12704 37 100.0 34 ..................................... ATATTTGGAATTATAGAAGCAATAACCCTAATAG 12633 37 100.0 41 ..................................... AAAAACAAATGATTAATAAGCTTAATGAGATAGACAGATTA 12555 37 100.0 36 ..................................... TTTAGTGCTATTCTGCCTTCCGTTTGTGTTCATTTG 12482 37 100.0 37 ..................................... CCTTATAGTCTGCAATATCTCTAAATGTTAAAGTCTT 12408 37 100.0 35 ..................................... TCAAACAACATTTCAAAAAAAGAATTTCTCACTAT 12336 37 100.0 34 ..................................... TCCATCCTGTTCTCGAACTGTTCCTCATAGAACG 12265 37 100.0 36 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACTTT 12192 37 100.0 38 ..................................... GGATCTCGGTTGTTTGATTCCCATCTATCACGTAATAA 12117 37 100.0 35 ..................................... TAAAAAGTATTATTTCTTATGATAACGCCTTTTGC 12045 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 11973 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 11902 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 11828 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 11754 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 11681 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 11610 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 11535 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 11463 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 11389 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 11317 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 11246 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 11172 36 75.7 0 .....T.....T..........G.GCCT-.......A | C [11140] ========== ====== ====== ====== ===================================== ========================================= ================== 88 37 99.7 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 16272-22890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPS01000067.1 Methanosarcina mazei strain 3.H.A.2.8 scaffold18_1_size43058-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16272 37 97.3 37 ..................C.................. CCGTTGCAACCCGTGGGCATGATGAAATTATAAAAAC 16346 37 97.3 35 ..................C.................. TGTGAGTTTGAATCGCTTGATTCTTTCAGAAAGGT 16418 37 97.3 34 ..................C.................. ATATTTTCAGAACGTTGAAACCAAAACGCATTAT 16489 37 97.3 35 ..................C.................. TAAAAAATAAATCAATAAGAGAATAACGTTTTTCA 16561 37 97.3 35 ..................C.................. ATTGATAGGGGAGAGATGCGGTATAAGCTCCCGGT 16633 37 97.3 35 ..................C.................. CAAAGAACCCCGCAACAGGCGAAAAGAAGAAAAGC 16705 37 97.3 35 ..................C.................. TTTTTAACCTGCTCTTCCCAATTACCGGCTAAGAA 16777 37 97.3 36 ..................C.................. ACCGCATTGTCACCGGATCCCTTTTGCCCTGCATTA 16850 37 97.3 32 ..................C.................. TGGGAGCTTAGAGGGAGTGCACGTATAGAGAG 16919 37 97.3 34 ..................C.................. CTGATAGGGTCAACCTTTAGCACTCCGATGAGAT 16990 37 97.3 33 ..................C.................. TGTTCAATGATCTCTACTTTTGCCGGGAAAGAT 17060 37 97.3 35 ..................C.................. CGGAATTCTCGCTAAATTGAAATCAGGCGAAATAG 17132 37 97.3 35 ..................C.................. TATGTTTCAAAGAGAGCTTTAACAGCGTCACTGTT 17204 37 97.3 36 ..................C.................. GTTATTTTTATATCAAGTTCGTTCATCGTGTTTTCA 17277 37 97.3 35 ..................C.................. CAGTGTGGCCGTTGAATGTGATTGTTTCATTGTCG 17349 37 97.3 33 ..................C.................. GCAGACCCAAAACGTATTGAATTCGTCTTCTGT 17419 37 97.3 35 ..................C.................. CCACCTTGTAGGTAATAATCTTTCTAATTACTACT 17491 37 97.3 35 ..................C.................. TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 17563 37 94.6 34 .....A............C.................. TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 17634 37 94.6 36 .....A............C.................. AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 17707 37 94.6 35 .....A............C.................. TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 17779 37 94.6 35 .....A............C.................. AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 17851 37 94.6 35 .....A............C.................. TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 17923 37 94.6 34 .....A............C.................. TTTATAATGTACCAGATCCATTCTGGCTGAATTA 17994 37 94.6 37 .....A............C.................. TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 18068 37 94.6 35 .....A............C.................. CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 18140 37 94.6 38 .....A............C.................. TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 18215 37 94.6 37 .....A............C.................. TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 18289 37 94.6 33 .....A............C.................. AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 18359 37 94.6 35 .....A............C.................. AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 18431 37 94.6 35 .....A............C.................. AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 18503 37 94.6 35 .....A............C.................. TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 18575 37 94.6 34 .....A............C.................. TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 18646 37 94.6 36 .....A............C.................. ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 18719 37 94.6 36 .....A............C.................. CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 18792 37 94.6 35 .....A............C.................. CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 18864 37 94.6 35 .....A............C.................. CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 18936 37 94.6 34 .....A............C.................. AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 19007 37 94.6 35 .....A............C.................. TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 19079 37 94.6 32 .....A............C.................. TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 19148 37 94.6 34 .....A............C.................. TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 19219 37 94.6 35 .....A............C.................. CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 19291 37 94.6 35 .....A............C.................. TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 19363 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 19436 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 19509 37 100.0 35 ..................................... AGCCTCTGTTTGTTGTACTGAGTAGGAATGCATAT 19581 37 100.0 35 ..................................... TATACTCCCCTGCTCTTTGCTTTCCTCTTCTTTTT 19653 37 100.0 36 ..................................... TTTTTGTATAAATCAGTTTAATAATAATGTTCTTCA 19726 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 19798 37 100.0 34 ..................................... TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 19869 37 100.0 37 ..................................... TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 19943 37 100.0 37 ..................................... CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 20017 37 100.0 35 ..................................... CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 20089 37 100.0 34 ..................................... ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 20160 37 100.0 34 ..................................... TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 20231 37 100.0 37 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 20305 37 100.0 36 ..................................... ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 20378 37 100.0 36 ..................................... AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 20451 37 100.0 36 ..................................... TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 20524 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 20596 37 100.0 34 ..................................... TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 20667 37 100.0 35 ..................................... CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 20739 37 100.0 35 ..................................... TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 20811 37 100.0 35 ..................................... TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 20883 37 100.0 36 ..................................... AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 20956 37 100.0 33 ..................................... TATTAAACGCTCAAGAAACAAGTAATGATATTT 21026 37 100.0 35 ..................................... TTTTAGGTTATTATCACGCTGCTTTAACATTCTCA 21098 37 100.0 36 ..................................... TTGCGATTTGGGATGTAGCTGACGACAGGGTTGATT 21171 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 21243 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 21317 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 21390 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 21464 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 21538 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 21610 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 21685 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 21757 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 21828 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 21900 37 100.0 38 ..................................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 21975 37 100.0 37 ..................................... TTTTATATATTAATGGAATAAATGAGTCGAGTGGTAC 22049 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 22120 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 22194 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 22269 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 22345 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 22416 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 22491 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 22562 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 22635 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 22707 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 22779 37 75.7 37 TG...A...GT..T....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC C [22790] 22854 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 92 37 97.3 35 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //