Array 1 369044-369663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVE010000001.1 Listeria booriae strain FSL L7-0984 NODE_1_length_1516345_cov_23.496075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 369044 30 100.0 36 .............................. ATAACCTACTCCCGACGCATCATCCTTGACTTCTGA 369110 30 100.0 34 .............................. CCTGGAACGACGTGAAAGCAACCGTGACCACAGA 369174 30 100.0 36 .............................. TCCACTCAAACATTTACTTATTTCCTTCCTTGTGCT 369240 30 100.0 36 .............................. GAGTCATTCGTTCGTGAAGCAGTAGAACACTATAGA 369306 30 100.0 36 .............................. ATTCTAACTAGCTCTTTTAATTTTTGTACAGGCATC 369372 30 100.0 36 .............................. AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 369438 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 369503 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 369569 30 93.3 35 ........T........A............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG T [369585] 369635 29 83.3 0 .................A..-...C..G.C | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAAGGGGATGGCTGATAAGTGGCGTTTGGAAAGCGAGGACCAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGAAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : CTAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCAATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 43334-42381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVE010000006.1 Listeria booriae strain FSL L7-0984 NODE_6_length_213950_cov_32.955184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43333 30 100.0 36 .............................. TAAATTTGATATGCGTCCAAATAGGTTTCAATCAAG 43267 30 100.0 36 .............................. TTCCAATAGTAGAAGGAGATATTGTCGTGGACCGGA 43201 30 100.0 36 .............................. GTCGATAGAATACTTCAAACTATCGATTATACTGTT 43135 30 100.0 37 .............................. GCAAGAGGCGGATGAAATTATAGCTAAGAAGGTAGAT 43068 30 100.0 35 .............................. CTTGGTAATGCTTCCTCACTCATATTGTTAATAAA 43003 30 100.0 35 .............................. CCCTTCAAGCTTTCACTGGTAGCATCCTCTAAATC 42938 30 100.0 37 .............................. AAATCAATTTTTGTAGCAGCTGCTAGGTTCCCAATTT 42871 30 100.0 35 .............................. CGAGATTGGATGGAATAAATTTAGTTCAATGCACA 42806 30 96.7 37 ...................A.......... AAATCCAGCCCGAAATAAGATGGCAGATGGGACAGCT 42739 30 100.0 36 .............................. TTAGGTGTGCCATCCGCACGACCAAACGCGCCGCCG 42673 30 100.0 35 .............................. AACACATTTTCCGCTAATTCACCTTTTTCAGTCGC 42608 30 100.0 36 .............................. TCTTCTAGCGTAAGTTTGTCTTTTGTCCACGCTGTA 42542 30 100.0 37 .............................. ACCCAACTAACCGAAGAACACGGCTAGAAGCTGTACA 42475 30 96.7 35 .............C................ TGGACTGAGACGCGAGCGCGCCAAATCCGTTTATT 42410 30 96.7 0 ........T..................... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAGCAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGGTACTAAAAAGGTTAAGCCTGTTTTTGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCC # Right flank : ACGTCTGGCTCTGTTAAATTGAATGCCAACACATCGGGTTTTTATCTAATTAGGAGTTAAAGCGTAATAATGCAAAGTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCTATGTTGAAAATTTTTAGCATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTCGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAAAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 47403-46580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVE010000006.1 Listeria booriae strain FSL L7-0984 NODE_6_length_213950_cov_32.955184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 47402 30 100.0 36 .............................. GTCACAGATGAAGAACTGAACGTTATTCTTCGTGAC 47336 30 100.0 37 .............................. AACAGGAACTCCAGCACCAAATACGCTACTGGACTTA 47269 30 100.0 36 .............................. TATGGTATCTTTTTGGTTTCTCTACCTTTTTCTTTA 47203 30 100.0 35 .............................. TCCCATTCCAACGAGTTCAAATACTCCCGAACTGG 47138 30 100.0 37 .............................. AAATCCGAAACTGGTGACCAAATAGAACAGCGGCTAA 47071 30 100.0 39 .............................. CCGAGAATCAAGAGCTATTAGAAGAGGAAGAGGCTTTAT 47002 30 100.0 34 .............................. GCCGTCGACTCGTCGGATCTCGCCCGCCTCCTCG 46938 30 100.0 36 .............................. CCGCGTCGATATGATGCACATCTGATCCAGGTTTAC 46872 30 96.7 34 ....................T......... ACCTCCATTTATATCACCCCTCAAAGTGATTATA 46808 30 96.7 35 ....................T......... CAACTGCGAGCGTACAAAAGTAGTTATCAGTTACA 46743 30 96.7 37 ....................T......... AAGGCAATAATATTCTGCAAACCATCCGGCAGATTGC 46676 30 96.7 37 ....................T......... TTTGAAATAAGACGCAGTATTTCTGATTTAACGCATT 46609 30 83.3 0 .................A......A.G.TC | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 97.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATATGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCGAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTTATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACCCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACGCCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTATAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAAGAAATACAATGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 322379-323656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVE010000003.1 Listeria booriae strain FSL L7-0984 NODE_3_length_658113_cov_28.041955, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 322379 30 100.0 36 .............................. TCTTTTGCTGTCGCTTCTTCATCCTTTCCGCTAGAC 322445 30 100.0 36 .............................. CGAAATAAGACGCCATGCGGCAACACAATCGCCATT 322511 30 100.0 36 .............................. TGAAACAGGGGCGCTTGGTGGGAAACTGATACCAGC 322577 30 100.0 36 .............................. TTCATACAGGGCTGAATGTTCGTGCAACAGCTCCAA 322643 30 100.0 35 .............................. ATTTTAGGCGCATAATTAGCTTGTTTAGTCCCGTT 322708 30 100.0 37 .............................. TTGGCACGCCAATCAACGCTAAGACTTGGCACTGTCA 322775 30 100.0 34 .............................. AACAAGACATGTTGCAAATAACGGAAGGTAGTGC 322839 30 100.0 36 .............................. TCATAAACACTGCAGTGTATTCCTCAAATGTGCGTC 322905 30 100.0 36 .............................. TCATCAGCATTACAGTTAGCAGTAGCAACAGGATTA 322971 30 100.0 34 .............................. TGAATTGGCAGAATTTGACTTAATAGAACTTCCA 323035 30 100.0 34 .............................. GTGAAAATATGTAAGGAATGTTTTATGACTGTTA 323099 30 100.0 35 .............................. ATGCTAAAAGTGAGCCTTTGGAAGTCACGGTAAAA 323164 30 100.0 36 .............................. ATACAATTCAGGAATATATCGTACATCATCCCGAAG 323230 30 100.0 37 .............................. AGCGCAAGCATGATGCGCGATGGAGAATGTATTTTCA 323297 30 96.7 36 .............T................ AGAGTAAAAGTCCCAATGCACAGCAGAGGAGATTAC 323363 30 96.7 36 .............T................ AAGACTTTCAATTTACAGGACACAGTTTAGGCGGCG 323429 30 96.7 35 .............T................ ATGCCAACCACATCTGTCATATCGCTTATTTTCCA 323494 30 96.7 37 .............T................ GTTATAACCAGTCCTATTATCATCCATGCAGCACCTA 323561 30 90.0 36 .............T............G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACCAG 323627 30 76.7 0 .......A.C...T.C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 97.7 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGAATTGTAAGGTTTGAGAGCTGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATCTGTTTAGCTACGATTACTTTGGCAGACAATCTCTTAGCCAGTATACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGAGGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATCTTCCTGGTGTGTCGTA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //