Array 1 91485-96133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDYI010000001.1 Acinetobacter bereziniae strain GD03392 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91485 28 100.0 32 ............................ ATCAGTATCTTTATTTGGTTTTGGCTTAGTTG 91545 28 100.0 32 ............................ GTAGGCGCGAACTGGAGAAATAAAAATGCTAT 91605 28 100.0 32 ............................ CTATCCCCCCTTATCTACCCTGTTTCGCGATA 91665 28 100.0 32 ............................ TTTTCGGCATTCTTCTGATGAAAGCTCTCCAG 91725 28 100.0 32 ............................ ATCCATCATATTTCCCCAATCAACATTGATTT 91785 28 100.0 32 ............................ TTTAGCTTTTACTTCTTTTGTAGCGTTTAGTA 91845 28 100.0 32 ............................ AACGCCTGAAACAGACCCGACAGGCTCAACTA 91905 28 100.0 32 ............................ TGATTCACGACTGCCGATATTAAGTGTACGTC 91965 28 100.0 32 ............................ TTTGCGTGGCGATAAAGGATGGAAGGCAGAAA 92025 28 100.0 32 ............................ TTGAATTCAATCATCTTGATCTATGTAAATAA 92085 28 100.0 32 ............................ TATGGTTGCGATACCTAGAATTGGTTTAAGCA 92145 28 100.0 32 ............................ TCGTGAAAATGAATATGAATACAAATACAAGA 92205 28 100.0 32 ............................ ACTCAGCAAATTCTGGAAGCGTTGGACACCAT 92265 28 100.0 32 ............................ TGAGTACAAGAGTGGTGGATTTATGAAATTTA 92325 28 100.0 32 ............................ AACTTCAATCACAGATCAATGAAATGGCAGAG 92385 28 100.0 32 ............................ AAATACGTGCAAATCACCATCTTTTTGAAACA 92445 28 100.0 32 ............................ ATACACCAGTGTGGACTACGGATTGTCTAAAA 92505 28 100.0 32 ............................ GTAGGGGTTTATATTAGTACTCTCCATACGCC 92565 28 100.0 32 ............................ TAGGTAGGCATTGTAATACAATTTTGTATACT 92625 28 100.0 32 ............................ CCAATTGTGCGATCCGCGTGCGCTGTTAATTA 92685 28 100.0 32 ............................ AAACAATCAGCCGATGAAGCAATTACCAAGCT 92745 28 100.0 32 ............................ CTGAACTTTAAGATAAAAACATTTGTCACAAT 92805 28 100.0 32 ............................ TGATGAAGCAACGGCAGCTGAAATTAAACAGA 92865 28 100.0 32 ............................ ATAGTTTTCTTGTTTGGGCAAGGTCGCCTGAT 92925 28 100.0 32 ............................ AAGTGTAGTTAATTAAATATTTGATAGGGCTT 92985 28 100.0 32 ............................ AAGTTTTGCTGCTTCGATTCGAGATCCAGCGA 93045 28 100.0 32 ............................ TTTAGGTCTGCACTTTGAGCTACTAGGTCTGC 93105 28 100.0 32 ............................ AGCCGATGCAATACGCTCCTTAGCAATTTCGA 93165 28 100.0 32 ............................ AAATGTTTTTTGAGGAATGTATGTAGGCAACT 93225 28 100.0 32 ............................ GCATTGATGACACCACAGACCACATCACAGAC 93285 28 100.0 32 ............................ GTGGTTTCGGCATACCTCCCGTACTTCGGTTT 93345 28 100.0 32 ............................ TTTTTCGAAAGGTCCACGGGTGTGGGGGTTGA 93405 28 100.0 32 ............................ AGTGTGGACTACGGATTGTCTAAAATAATTGA 93465 28 100.0 32 ............................ GAGTTGATTGATGAAGATTCAGGAAGTTATAC 93525 28 100.0 32 ............................ TAAAATCATCATCATTTTTTAATCCTGGTCTC 93585 28 100.0 32 ............................ TATCGCAAAATTGGCAATTCCCATCACAATTC 93645 28 100.0 32 ............................ CTCAACAATATCCTTGGCCAAAGTCGGATGAA 93705 28 100.0 32 ............................ TTGTAGACCAAGCCTTGATTGCTCCAGCCGAT 93765 28 100.0 32 ............................ AATAAGCTTTAAGTCGACCGTCGGAAAGGTCG 93825 28 100.0 32 ............................ ACAACGCAAGAGGCAAAGACAATGAACTTGCA 93885 28 100.0 32 ............................ GGTCAGTCTCGCTTCCAATGTAACTAAGCGGT 93945 28 100.0 32 ............................ CGACAGGCTGAGGTTGAAGAGAAAGACAAAAA 94005 28 100.0 32 ............................ TTTTGAGTGCAAAAGCTGAATTTTCTCTTTTA 94065 28 100.0 32 ............................ TTGATGTTGTCTTGGGCGAGAAACTTAGATCC 94125 28 100.0 32 ............................ ATTTCCAACCAGGTGTTAAAACTCAGCCTCAA 94185 28 100.0 32 ............................ AAGTTTTGCTGCTTCGATTCGAGATCCAGCGA 94245 28 100.0 32 ............................ AAAGACCAATAATTAAATCTGCAAAGTTACCA 94305 28 100.0 32 ............................ ACAAAGGGCGAACTTAATAAAATTGGCTCGGA 94365 28 100.0 32 ............................ TTACGCAAAAATATCTTTGATGTAATCATCTA 94425 28 100.0 32 ............................ TCAATAGGACCAATATTGGTTATTATAAAAAA 94485 28 100.0 32 ............................ TGAATTGCTGCTAACGTGTGTATAAAATCAAT 94545 28 100.0 32 ............................ TATTGTTAATGGAATTTATACAAATGATTCTT 94605 28 100.0 33 ............................ ATCCCCGCAGCGCGATAATCTTCGTTTTCCTCT 94666 28 100.0 32 ............................ GTAATTCGACTAAATCAGAAGCACCAGCATTT 94726 28 100.0 32 ............................ ACATCGCTAATTTCTTTAAAAGCTGAGAAACC 94786 28 100.0 32 ............................ ATTAACTACGCTTCTCAACATGATTCCTAAAA 94846 28 100.0 32 ............................ TGTTTCATCCTTTGCATTCAATGACTTATTGA 94906 28 100.0 32 ............................ AGTCAGCATTTATGACAAGACTCAAGCCGATT 94966 28 100.0 32 ............................ TGCTTTGATCGCTTTTTCTTGAGCTTCATCTT 95026 28 100.0 32 ............................ AATGGTTTCTGGATGTGTTGCTGATCCTGTTT 95086 28 100.0 32 ............................ TTGAACACTATCACGTAGACCCGCTGGACTGC 95146 28 100.0 32 ............................ CTTTGCATTCAATGACTTATTGATAATTAAAA 95206 28 100.0 32 ............................ AATGTGCCTAATTACGCTTTTAACCGATTACT 95266 28 100.0 32 ............................ TGCAACGACTTACGAAAAGCAACTTCATCTTT 95326 28 100.0 32 ............................ TAGAATCGGCTGATTGGATAGCTCTAAAGTGC 95386 28 100.0 32 ............................ AATATTTGCAGGTCGTGCGAATGGTGGGCGTA 95446 28 100.0 32 ............................ CGTACAATTTTTAATACATCTGTTCGCAGTCA 95506 28 100.0 32 ............................ GAATACGGACGTAGTTCTGGTGTTGTTGAATT 95566 28 100.0 32 ............................ TGAAATGCAGATGCAGTTCATCGGCTTAAAAT 95626 28 100.0 32 ............................ AAATCTTAGACCAGGAACATTCAATTTAGAAC 95686 28 100.0 32 ............................ AACATGAACTTTTAGCAAATTTAGAAGAAAGC 95746 28 100.0 32 ............................ TAAAACATTTAATCCAACCCACCATGTGTGGG 95806 28 100.0 32 ............................ TAATTTGTACGCTGCAACAAAAACAGCATTTC 95866 28 100.0 32 ............................ ACACTCCAACTTGCACTGGTCTGGACGGTGGC 95926 28 100.0 32 ............................ AGCTGGCAATGCAGCTCCAGTCAGTACCGCAT 95986 28 100.0 32 ............................ AGCTATATCTCTAGGGCAAACAGTCGAAAAGC 96046 28 100.0 32 ............................ TTGCTTGATGTCAACGAAGATCAGTTGAACTT 96106 28 82.1 0 ......................ATCCT. | ========== ====== ====== ====== ============================ ================================= ================== 78 28 99.8 32 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : GCGCTGGGCGAAAACATTATATAAACAACTTGCTAAAGGATTTGGAATTGAATTTATCCGCGATGAAGGAAAAAATTCTCACGATACTATTACAGATATAGCCAACAATTACCTAGATCATGGAAATTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGGATTAGCTTTGCTCTACCTATATTACATGGCAAAACACGCCGAGGAGGCTTAGTTTTTGATCTCGCGGATCTAGTCAAAGATGCTATCGTGATGCCTATAGCCTTTATATGCGCAAGCAAGGGTTTAAATCAAAAAGAATTTCGAATGCAACTCATCGAGACTTGCCAAGATCAAGATATTTTAGATTATATGTTTAGCTTCATTACTGAAATATGTAGTAAAATTAAATAAAATCAATACCTTAAAAACAACTCTTCTCTACGAAGTATTTTTACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCAA # Right flank : ATCTAGAAACAGTCAAAACATTGTAATGAAAATTAACTCATCACATCATCCAATACTTTTACCATTAAAATTCTCTTGTATTTATTTTTAAGAGTCAATTTAGACTCCACTCAACTATCAAAAAAATCCCCGCACAATGGCGGGGATTTTTTTATGATCTGAGATCAGAATGACTTACATCATTCCGCCCATACCACCCATTCCGCCCATATCAGGCATAGCAGGTTTATCTTCAGGAATATCTGTGATCATACATTCAGTTGTTAACATTAAACCAGCAACAGAAGCAGCATGTTCAAGTGCAGAACGTGTTACTTTTGCAGGATCAAGGATACCCATTTCTAACATGTCGCCATATTGTGAAGTCGCAGCGTTGTAACCAAAGTTACCTTCGCCATTTTTCACAGCATTGATCACAACCGAAGGCTCATCACCTGCGTTAGAAACGATTTGACGAAGTGGTGCTTCAATCGCACGACGAAGGATATTTACACCTACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 146415-144285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDYI010000013.1 Acinetobacter bereziniae strain GD03392 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146414 28 100.0 32 ............................ ACGTTGTTCTGAATAAGCCTTATCCAAAGCCC 146354 28 100.0 32 ............................ ATTCGCCGACATGATCATCTTCATGTACTTGA 146294 28 100.0 32 ............................ TTGCAACATCTATAGCCAATCTAGATATAAAT 146234 28 100.0 32 ............................ AATGACTGAAGATATAACCGCATGTTCTTCAG 146174 28 100.0 32 ............................ ACCTGCGGGATTGTTCGGGTTGTACACAGTAG 146114 28 100.0 32 ............................ ATTTTACAAGGCTCGTGTTCCTGTTACTGCAA 146054 28 100.0 32 ............................ TGTTGTTAAGTCAATTGTTACATCACCCTCAG 145994 28 100.0 32 ............................ TCAATCAATGAGCGTCATCATGTCTGCAATGA 145934 28 100.0 32 ............................ TTATGTACAACTCAAAGCAAGTCCTGCAAAGA 145874 28 100.0 32 ............................ GATTCACTCGTCGATCATGGCAACCAGTCACA 145814 28 100.0 32 ............................ AATAATATGTGCTTGCTCAGTATAAATAATGC 145754 28 100.0 32 ............................ ATATTGGTTAATAGGGGGGCAATTGCACTTAA 145694 28 100.0 32 ............................ ATTATTTCCTCATTGTCATTGCATGAATATAA 145634 28 100.0 33 ............................ ATATGGCAGAAGTTAGAACACGGGAAATTGTAT 145573 28 100.0 32 ............................ ACAATGATCAGACTCGATAATAGTAAAATCAG 145513 28 100.0 32 ............................ TTTCTAATGAATCAAGATAAAACATAATTTCA 145453 28 100.0 32 ............................ ATTAACACTTGTTCAAATTGCTTGGAACTGTT 145393 28 100.0 32 ............................ ACTAATTGGCGTTTTTTCAACTTTATTGAAAG 145333 28 100.0 32 ............................ AGAGATTGGATCCAACCGATCTTTAATGATGT 145273 28 100.0 33 ............................ TGCCATTACACGGCTTGGGGAATGGATATCCAT 145212 28 100.0 32 ............................ AAAAACAAGCTCTGCAATACAGCCCATTTTAG 145152 28 100.0 32 ............................ AATTTGGTGGGTTTAGTCCATTTGGTAATACT 145092 28 100.0 32 ............................ TTAGTGATTGCATGTGCCAAGCAGAAAAGGGC 145032 28 100.0 32 ............................ AACCACCAGTAGTATTACGTGAAAGTTTAAGC 144972 28 100.0 32 ............................ ATTTATTTGACTCATAGCTAAACGTCGAAAAT 144912 28 100.0 32 ............................ AGTTGAATCAGGTTTTTTTATCTAAAAATTGG 144852 28 100.0 32 ............................ TGCATATCTTTCATTTTGTCCGCGAAAGACTC 144792 28 100.0 32 ............................ AATCATTTCGATAAATTTCTTTTGCTTGGGTT 144732 28 100.0 32 ............................ AGTATGATTTTGAACACCTTGTTCTGATAATT 144672 28 78.6 32 .C...C.G...T.....C.......G.. TATACGTCATGATATTGAGCAAATATTACTCA 144612 28 92.9 32 .....C...................C.. TTGCAAAAGCAGCTTTGGCTAGTGCAATGGAA 144552 28 82.1 32 .....C.G..A...C..C.......... AGCTCGATAATCGAGTTCGATTTTTTCCCAAT 144492 28 85.7 32 .....C.G..A......C.......... ATATTATTTTTAGGGGAATAACAATGAATGAA 144432 28 96.4 32 .....C...................... ACCCTAAAAACGCTTTGTCCACCCTAAAATAT 144372 28 96.4 32 .....C...................... TTGCTAACGTTTTGAATTGCCGAAAAGTCTGA 144312 28 71.4 0 .....C....AT...AA.CC....A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 97.3 32 GTTCATTACCGCATAGGTAGCTTAGAAA # Left flank : TCAAAGTGGCTAGAAAGATTGGTAGACTATGTTCATATCACTCAACCACGAGAAGTTCCAAAAACAAAAATCACTGGATATGCCCATTATTTCCGAATTAATCCAAAAATGACTTTGGAGGAACGTATTGCTCATCAGGCTCAACGACGAAGCATTTCTTTTGATGAAGCTCAACAACATTTTAAGCAATATAGTGAACAACCTGAAATTGTTCCCTATGTCAGTTTAAAAAGTTTAAGTACTAAACGTGAACAAAATATAGATCGATATTATCGGTTATATATTGGGAAATCTGTTGCTGAAGAAGCAAATGATGGAAAATTTGGAACATATGGTCTCAGTAGAACAGCAACAGTCCCCGAATTTTAACCCAATATTTTTCCACTCTTTAACAACTTAATAAAATCAATAAGTTATAACAGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAATTTACTGTTATCACTTTATTTTTTAATCTAAAATTATA # Right flank : TAAAAATCCCTTAAAGTCTTAGCTAAATTTAATAAAGTACAAACGATAAGAATAATTTTTATAGTAAATAAAAGATGATAATTTAAATGATAATTATTTGCATTATTAATTGCATTTGAATATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTAAGTTGCGTATTAACATGAATAAACAATTAACACTTCAAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGATACTTCAGAAGACTCTTCCAAGCTTAAAACGATCGTCGTTACAGCAAGTAGTCAGGCGGTGGATGTTAAAGAAGCACCAGCCAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGAGTTACTGGTGGAATTAGTCCTACCAAAGAAGGCTCTAAAATTAAACTACGTGGTTTACCTGACAATTACACAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201108-199459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDYI010000004.1 Acinetobacter bereziniae strain GD03392 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201107 28 100.0 32 ............................ AGAAATAGCAGTACCTATCATTGAAAAATTAA 201047 28 100.0 32 ............................ TTATTCTTTTTGTTCATTGATGCTCTCCAATC 200987 28 100.0 32 ............................ AATAATTCTTCAGGAAACTTTAAGAGCTCTTT 200927 28 100.0 32 ............................ CCCAATGCAATTAAATCAATCGCACGTGCAGA 200867 28 100.0 32 ............................ TTTCAGGTAATCAAGCAGCTTATGAGCTTGGA 200807 28 100.0 32 ............................ AATCAACTTGAATCAGAATTACGTGATCGCCT 200747 28 100.0 33 ............................ AGTAAAAACAGAAAATCAAATAGCTGAACATGA 200686 28 100.0 32 ............................ TCGATCAGAACAAGAACTCGTAATCTGGGGTG 200626 28 100.0 32 ............................ CTAAAGGGCTTTCACACAAATACCCACACTCA 200566 28 100.0 32 ............................ AATACCTAAATCTATTTGCTCTGGGTCTAATT 200506 28 100.0 32 ............................ TAGAACTTCTGTCCTGTATTTTATTACTTCAT 200446 28 100.0 32 ............................ ATTAATGACCGAACTTTTAGCTTAACAGACTT 200386 28 100.0 32 ............................ TTCATGATGAGAAGGCATCAAACATCATTCCG 200326 28 100.0 32 ............................ AGCCCAATCTGGAACAACGAAAGGGTATCCGT 200266 28 100.0 32 ............................ TGGTATATTATGCGAAATCAGTCATATAAAAA 200206 28 100.0 32 ............................ TAAAGAGCGTTTACATTTAGTTGCCTAAAGAG 200146 28 100.0 32 ............................ GACTCTCACATTTAACGTGCTTAGAACGTATT 200086 28 100.0 32 ............................ AACCAAGAAGCACCAAACATTCGTCAAACAGC 200026 28 100.0 32 ............................ GATTCCACAATTATTGATGGTGAAGCACATGA 199966 28 100.0 32 ............................ ATTGTGCTAGACCAATGAACAAACAGGCTTCA 199906 28 100.0 32 ............................ ACACATGAGAACGAAAGCCATAACCGCTGCAA 199846 28 100.0 32 ............................ TCTAAGGCGAAAGAGGTTGCTGGATATTTCCC 199786 28 100.0 32 ............................ ATCCTCCATTACCCATCCGATACCCTCCAATA 199726 28 100.0 32 ............................ TGTTTGTGCTGCACCTACATTAGCCAATGATG 199666 28 100.0 32 ............................ TCCCACGCCGATAGTTCTCGGGTGCTACTTGG 199606 28 100.0 32 ............................ TAACGAGCGATCTGAATCACATGCAGTTTGTG 199546 28 100.0 32 ............................ TACCAATATTTGGGATGATGGTACATTTACTT 199486 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATGATCTTTTTTAGCAGTTTATTGAGTTGCAAAGGAAGTATGTATTATCGTTTGCTAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTTGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTACCACTTTATTTTTTGATCTAAAATTATA # Right flank : AATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTTGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAATAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9489-7901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDYI010000015.1 Acinetobacter bereziniae strain GD03392 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9488 28 100.0 32 ............................ AAGTAATGTAATTCTCATATTTGATTTGACGT 9428 28 100.0 32 ............................ TTGATGATTTTGATTAATTGCCCAACCATCAA 9368 28 100.0 32 ............................ AATAAACACAGACAAAAACATATCATTGAAGA 9308 28 100.0 32 ............................ ATTCACCACCATTGTCTATATGGCATTTAACA 9248 28 100.0 32 ............................ AAGCATCCGCAGAACCAAGTACACCGCTTGCA 9188 28 100.0 32 ............................ AAAAACAAAAAGCAAGACTGGCGTTGAGTTGA 9128 28 100.0 32 ............................ TTACGATTGACTTTATTGCCATTTATAGCTTT 9068 28 100.0 32 ............................ GCTATCGGGTCTTGGTCATGCATCAGCTCTTT 9008 28 100.0 32 ............................ ATTTACATTGACAGCAGTTGTCACAGCATTTA 8948 28 100.0 32 ............................ GATCCATTCGAGGGACAACAAGAAGAAGACGG 8888 28 100.0 32 ............................ AATTAAGCTTCTGTGGGATTGATACAGATACA 8828 28 100.0 32 ............................ TTCCAAAACTTTAGTTGGTCCATTAAACCATT 8768 28 100.0 32 ............................ AAGGCAATCACGTTGCTATTGTGGAACGTGGT 8708 28 100.0 32 ............................ AAATATATTTTTATAGTAATGCGTTGCTTCTG 8648 28 100.0 32 ............................ ACAAGTAGTATTTTTGATGCCTTAAGGGGTCA 8588 28 100.0 32 ............................ TGTTGAATTTCTATTTTTAACGGTACTTTTGA 8528 28 100.0 32 ............................ AGTCTATGCCTTATAAAATAGAGCTAGATATT 8468 28 100.0 32 ............................ TGAAACCCATATCCAAACGCCTATAATTTCGA 8408 28 100.0 32 ............................ ATGTGCGAATAGTTTGATAACTCGTAATACTC 8348 28 100.0 32 ............................ TTAGATTCTTCCTCCAACCACTGGTCGAATAA 8288 28 96.4 32 ...T........................ GCACGCCCGCAGGTAACGTGTTTCCGCTTGCT 8228 28 96.4 32 ...T........................ AATTGGTCCACAACATCAGGATCAGTGTCATA 8168 28 96.4 32 ...T........................ AATTGGTCCACAACATCAGGATCAGTGTCATA 8108 28 96.4 32 ...T........................ CATGCCCTGAAGAACTGTTGAAGCCTTATGAA 8048 28 96.4 32 ...T........................ AATAAAGGAACTTGCCTTTTAGCTTGTTGTCC 7988 28 96.4 32 ...T........................ ATTCACGGCATCGGTTGAAGTTTCAGATACAT 7928 28 96.4 0 .....T...................... | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.1 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : GCTTTAAATGATGCCAAATTTAGTAAACGGATCTCAGATAGGCAATTTAATTTAATTCAAACAATTATGTTTGTAACAGGACAGACGAAAAAGTTTTTAAACCAAGCTGAGTTATATCGAATACCACAAATCCAAGTTTTGTATACAGGTAAAACAGAACGTACTTTTTATCGTGATATTGCTAGATTGGTTGAGCTAAACTTTTTAGATGATCAAGATGGATTGATTGTTGTTGGCGAGTCAGTTTAAATGTGATGAGTTTATAAATTGCTTGGCAATATTTTATAAATTTTTTGCAAATGAAGCAAAAGTAGGAAAATTTGGATTGTATAGATTTTAGTGAAATAGAAGATAATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATCAATAAATTATAATCGTAAATAGAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAGTTATA # Right flank : GAGATTTCTTCATTCGTAATTTGAATTGTTCAAAATTTGATTTATATTCATTTCTGTTTTATTATTTGCTTGGAGACGCCGAGTAGCGGTAACTACCCGACGCATTCTGTTAGTGAGCTGATTGAGAAATCAACAACAATAACAGGATGACAACGATGATTAGGTAAAAGCGCATCGTAAACCTCCAAGGATTAATGTAACGAAACACCGTTACAGGTCACCCTAGCCCCAATGACTAGGGCAGGTTACTGTAACACAACAAAAAGCGCCCATGGGCGCTTTTTGTTGTTTAAAGAGATGAGGTTAACTACATCCTATCCAGCGTTTGTCTTCTTCAATTACCATATTCACTTTTTTCACTTTCAATTCAGCACGATCGTTTATTTTATCTGTTTTGTACACTGAGAGACGTCAAGAGAATACCTTTCGTATAATCTGATCATTCTCTAACAAGCATTCACTACCGTATAGGTAGCTTAGAAAAAGTGCAATAAAGCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTTACTACCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14525-11131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDYI010000015.1 Acinetobacter bereziniae strain GD03392 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14524 28 100.0 32 ............................ TCAAAAGATGAAAATTCAGAAAAACGTGTACT 14464 28 100.0 32 ............................ ATACACATTGGAAGTCTTAGCAGATTTCTCTG 14404 28 100.0 32 ............................ TCTCACTTCAGCATAAGATTTGAATGTAATGA 14344 28 100.0 32 ............................ TTGAAGAAGCAGCCGAAAAAATAAGTTTAAAA 14284 28 100.0 32 ............................ TGACTGAATGGCAAGTACAAGCTTATTCATGC 14224 28 100.0 32 ............................ AAAAATAAAGGCACGGACTTTGACGAAAACAA 14164 28 100.0 32 ............................ TTCGATAGCGTGGCTAGGCATAGGAATTAATT 14104 28 100.0 32 ............................ TTCGATAGCGTGGCTAGGCATAGGAATTAATT 14044 28 100.0 32 ............................ AAGATTGGGACTAAATTCGGGAATGCTTCAAT 13984 28 100.0 32 ............................ AAATTTGTAAATCAAGGTTGGTTAAAGTAAGT 13924 28 100.0 32 ............................ AACTCAACAAGAACCTCAAGTCGTTACAGCTC 13864 28 100.0 32 ............................ TATCTAAAGCAAGTTGTAGCTGTTGAATATCA 13804 28 100.0 32 ............................ TTGAATAGCTTTAAGCGCATCATCCATAGCCC 13744 28 100.0 32 ............................ TGTTTATACATCTTGGGATTTAGGGATTTTAG 13684 28 100.0 32 ............................ TAATACAAGCGGAATAATAATAGCCATTGCAA 13624 28 100.0 32 ............................ AGTTTGTAGAATCACAAACAAAGTTTGGTGCA 13564 28 100.0 32 ............................ AAAAATCTATTCCGTAATGTCGATGCGTTGAG 13504 28 100.0 32 ............................ ATATAAAGAATTCTTTTTTTATCTTCTTTTTC 13444 28 100.0 32 ............................ TATTTACAATTGTAAAAGTGAATAAAATAGAG 13384 28 100.0 32 ............................ TGTCGCTTATGTCGAATCATTGTTAAGCCTGC 13324 28 100.0 33 ............................ AGTCCGTTGCTTTTGCGCCAACTAAAGTTACTT 13263 28 100.0 32 ............................ TGTTGATGGTTGTAAAAACGGTGAAGCATATT 13203 28 100.0 32 ............................ ATAAGTTTCCATTAAAACACGTTTGTATTCAG 13143 28 100.0 32 ............................ AAGCATAAACCTTTGGTTCGACACCTTCAGCA 13083 28 100.0 32 ............................ GTTTGGCTCAAACCTGAAAACATTGAGTATCA 13023 28 100.0 32 ............................ ATCTTTCTCAGAACGGAAAATTGACGGTAAAA 12963 28 100.0 32 ............................ AACTTCTGATGGCTGTAAAAACGGTGAAGCAT 12903 28 100.0 32 ............................ TGTTACAGTGGCACCTGAGCTTGAAAACAAAC 12843 28 100.0 32 ............................ AGCAATGGACTACATATTGTGTATCCATCCTT 12783 28 100.0 33 ............................ TGAAACTCACGTACGCATAAGATCACGGTCTTT 12722 28 100.0 32 ............................ ATCATCATTTTTTAAAATTGAATGCCCGATTT 12662 28 100.0 32 ............................ TTTCAGCAATTGCAAGGATTGGTAAGCGATAC 12602 28 100.0 32 ............................ ATTACAACGCTTGATAAAATAGCCATACATTT 12542 28 100.0 32 ............................ TAATGCACAAAACGATACTTCACGAATACGAC 12482 28 100.0 32 ............................ ATGACAAAACAATACATCGCCCGGCAAAAAGT 12422 28 100.0 32 ............................ ATGCTCAGTAACAACATTCATTACGCCGTTGA 12362 28 100.0 32 ............................ GTAATAAACACACTCAACAGGCGACCCATTCA 12302 28 100.0 32 ............................ ATTGGTTGGCTTGTAGGTGCGTAATTGCTTGT 12242 28 100.0 32 ............................ AGTCTCCTTGCCATCGGTATTGTGATTTTGGA 12182 28 100.0 32 ............................ ATTTTCTGGTCGGGAAAATGACATTTTAATAA 12122 28 100.0 32 ............................ ATGTTCTGATGAGGAAGTCTGAATAAATATGT 12062 28 100.0 32 ............................ AGTAAGAATTAAAAGGAGTAAATAATCTTGGT 12002 28 100.0 32 ............................ TAGAGCTTTATCAATTTCGACTACGTTCGAAA 11942 28 100.0 32 ............................ AGATGTGGTCAACATCAATTTCAAGCTTCAAA 11882 28 100.0 33 ............................ AAAACGTTTAGCTAGAACTGGATCTGTTTTTTT 11821 28 100.0 32 ............................ TTGTTTTTAATCGTGATACTTCAATTTCATAA 11761 28 100.0 32 ............................ GATTATAGTTTCTGCACTCAACGAGTATGCAA 11701 28 100.0 32 ............................ AGAATAAACCGCATTCTCTGCTGCTACATCTG 11641 28 100.0 32 ............................ AATAATATTAAATACCTGAGAACCTTCTTGCT 11581 28 100.0 32 ............................ GACACAACAATTAACTCAAGATCAAATTGACG 11521 28 100.0 32 ............................ TTATTTATGCATTGCTCAAGGATAATATGAAC 11461 28 100.0 33 ............................ TAATACATGATCAGTAACAACCTTGCTTGCAAT 11400 28 100.0 32 ............................ ACCAGAAGAAGGTTTATTTTTAATTGCTGCTT 11340 28 96.4 32 .....A...................... AAGGGTACATTCCAGGTTTAAAGGAAATACCG 11280 28 96.4 32 ...........C................ ATTTGGGCTATCTTTTGCTTCAGCAACAATGT 11220 28 96.4 32 ...........C................ TGGTAATGCAACAGCACAAGATGATTGGAGAA 11160 28 89.3 0 .........T.........A.......C | CA [11134] ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.6 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : CCAGTTCGAGTCTGGATATACCTACCAAGATTTTTAAAGGGTTTACAAGTATTTTCAAAGACTTGTAAACCCTTTTTTTATGGTTAGAATTTTGTTGTTTTGACTAGATTTATCAAAAAATCATAGAAATAATTACTAGACTTCACCAAGAAGAGGATGAATGAAGTTACCAAAACCGATTAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAATGAAATGTAAGATTTCTTCATTTTCTAATGATAAATTAAATGAGTGACATTAAAAACATGTGTGAATATTGGAAAATCTTTTAGTGATAAGATAAAAGTAGCTGATTTAGAGTATATAGGCTTAATTAATCAAACAAATATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATCAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTATA # Right flank : TTAAAATTAATTGGATATAGGTTTAATGTGACTGGAAAAGTCTAATCAATTGAAAAATTTCGATATTATGTTTAAAACAAAATTTGACAAAATGAGTGACATAATCTTTGACATTATTACAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTTATTTGACAAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCCGGCTCTTTTACCTTTCAGCTTGGGTTTGACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGTCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGACTAGATCCTAAGACAATACAAAAGACCGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //