Array 1 81149-82640 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXP02000011.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0055 NODE_11_length_144418_cov_24.147625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81149 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 81210 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 81271 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 81332 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 81393 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 81454 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 81515 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 81576 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 81637 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 81698 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 81759 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 81820 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 81881 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 81942 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 82003 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 82064 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 82125 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 82186 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 82247 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 82308 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 82369 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 82430 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 82491 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 82552 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 82613 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //