Array 1 505011-507158 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDPA01000016.1 Listeria monocytogenes strain OCF07 contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 505011 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 505077 36 100.0 30 .................................... GTGATAGTTCTGTTTAGATCTACACTTTTT 505143 36 100.0 30 .................................... ACGTTCTTCCGCAGAGAGTTCAACGTAACT 505209 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 505275 36 100.0 30 .................................... AATGAAATGGATTTAAAGACTATCTATGAC 505341 36 100.0 30 .................................... CATATTATTCTCCCTCCATTAATCCGCGCG 505407 36 100.0 30 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGG 505473 36 100.0 30 .................................... AATGAATTTATAGCATTTATCGAACCAATT 505539 36 100.0 30 .................................... CACTGCTGTAGCCGCTGTTTTAGCCGCTCC 505605 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 505671 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 505736 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 505802 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 505868 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 505934 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 506000 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 506066 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 506131 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 506197 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 506263 36 100.0 30 .................................... ACCTTACGGAAGATAACCGCATTGGCTTGA 506329 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 506395 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 506461 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 506527 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 506594 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 506660 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 506726 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 506792 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 506858 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 506924 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 506990 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 507056 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 507120 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [507145,507151,507154] ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //