Array 1 95886-97378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJY01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95886 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95947 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96008 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96069 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 96130 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 96191 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96252 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96313 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96374 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96435 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96557 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96618 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96679 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96740 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96801 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 96863 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96924 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96985 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 97046 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 97107 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97168 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97229 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97290 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97351 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113510-115474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJY01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 113510 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 113571 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113632 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 113693 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 113754 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 113815 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 113876 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 113938 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 113999 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 114060 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 114121 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 114182 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 114243 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 114304 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 114365 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114426 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114487 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 114548 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 114609 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 114670 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 114731 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 114793 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 114896 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 114957 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 115018 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 115079 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 115140 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 115201 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 115262 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 115323 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 115384 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 115445 29 96.6 0 A............................ | A [115471] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //