Array 1 163618-162019 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C3378 NODE_1_length_376483_cov_71.074755, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163617 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163556 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163495 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163434 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163373 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163311 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163250 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163189 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163128 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163067 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163006 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162945 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162884 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162823 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162762 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162700 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162597 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162536 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162475 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162414 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162353 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162292 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162231 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162170 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162109 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162048 29 96.6 0 A............................ | A [162021] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181670-179750 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZU01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C3378 NODE_1_length_376483_cov_71.074755, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181669 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181608 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181547 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181486 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181425 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181364 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181303 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181242 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181181 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181120 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181059 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180998 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180937 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180876 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180815 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180754 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180693 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180632 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180571 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180510 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180449 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180388 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180327 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180266 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180205 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180143 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180082 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180021 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179960 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179899 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179838 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179777 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //