Array 1 83367-82788 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHY01000007.1 Escherichia coli strain SI-NP053 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83366 29 100.0 32 ............................. GATCGTTCCCCGTCGAAAGGATCACACACCTC 83305 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 83244 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 83182 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 83121 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 83060 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 82999 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 82938 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 82877 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 82816 28 75.9 0 .A.........C..T....T-.G.....C | C [82791] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110444-108951 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHY01000007.1 Escherichia coli strain SI-NP053 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110443 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 110382 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 110321 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 110260 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 110199 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 110138 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 110077 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 110016 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 109955 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 109894 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 109833 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 109772 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 109711 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 109650 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 109589 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 109528 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 109467 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 109406 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 109345 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 109284 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 109223 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 109162 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 109101 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 109040 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 108979 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //