Array 1 15993-17581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHI01000002.1 Pasteurella multocida subsp. multocida strain Karachi contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15993 28 100.0 32 ............................ TCTAATAGGAAAATAAAAACATGAAACAACAA 16053 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 16113 28 100.0 32 ............................ AATTCATTGAGGGGCATGGTAAACGTAAGAAA 16173 28 100.0 32 ............................ CTGGGGATTGACGATAGGTGAACGATGAGGGT 16233 28 100.0 32 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACC 16293 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16353 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16413 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16473 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16533 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16593 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16653 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16713 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16773 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 16833 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 16893 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 16953 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 17013 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 17073 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 17133 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 17193 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 17253 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17313 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17373 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17434 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17494 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17554 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97503-99809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHI01000001.1 Pasteurella multocida subsp. multocida strain Karachi contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97503 28 100.0 32 ............................ ACAACAACTAATATTTTAAATCTCATACAACA 97563 28 100.0 32 ............................ ATTTCGACGTCTTACCCCCCGTATATAGACAC 97623 28 100.0 32 ............................ TACAGGCAATCTGCATTTCATCGTGAACCCAT 97683 28 100.0 32 ............................ CAGATAACTTAAAGTGGTACGACCAGTCAACT 97743 28 100.0 32 ............................ TTAACTCTTTGATATCTTTATGTTTATCATCA 97803 28 100.0 32 ............................ AATGCCTGTCCGCTTGGGCGCAAGTATCAGCC 97863 28 100.0 32 ............................ ATATCACGCTGGGTCACCTACAGATGCCACCT 97923 28 100.0 32 ............................ CAGTTAGTTTGCTTAGGTTTGCTTAGAAGTGA 97983 28 100.0 32 ............................ AGCTATGGCGGACGGTAAGTTCACTTTCAGGT 98043 28 100.0 32 ............................ AGTCAACTTAGAGAGATAACTTAAAGAGGCCT 98103 28 100.0 32 ............................ TCGCTTTGTTTTATTTAATTTGCGACCTTTTA 98163 28 100.0 32 ............................ ATTTATATTTGTCTGCATTTCCTCGCTTTGTT 98223 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 98283 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 98343 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 98403 28 100.0 32 ............................ TTAGTTATACCTTTAGTTATACTCCTTTTCTT 98463 28 100.0 32 ............................ TCCAGATAACTTAATGGTCTAACTTTTAGTCA 98523 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTAACTTTAGTCA 98583 28 100.0 32 ............................ TTATCCACAACTTCTTTAGCTACAAGCTTTGC 98643 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 98703 28 100.0 32 ............................ AGACGGATTCCCTGTTTGGCAAGAATATTTTG 98763 28 100.0 32 ............................ TTTGTGAGAATCTATTAGAGAATGGGTCTGAG 98823 28 100.0 32 ............................ CAAATTGGGGCGCATACACAATTTCACAACAA 98883 28 100.0 32 ............................ TATACGGCAGTTAACGAAGGAAGGTAGGCACT 98943 28 100.0 32 ............................ AAACAGGGAATCCGTCTGGTGCGGTCCACGCT 99003 28 100.0 32 ............................ GACTACCTACTGTTCACCTACCGTTCACCTAA 99063 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 99123 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 99182 28 100.0 32 ............................ CAGATAACTTAAAGAGGTCTGACCAGTTAACA 99242 28 100.0 32 ............................ AAAGCTTGTCCGAGCTTTAAAGCAGACGTCTG 99302 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 99362 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 99422 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99482 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99542 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 99602 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 99662 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 99722 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [99730] 99783 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 273147-273776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHI01000008.1 Pasteurella multocida subsp. multocida strain Karachi contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273147 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273213 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273279 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273345 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273411 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 273477 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 273543 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 273609 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 273675 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 273741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //