Array 1 202603-202875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOG010000001.1 Ligilactobacillus saerimneri strain N69 No.69_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202603 29 100.0 32 ............................. AATATGCGCAGATGATTGGGAGGTCATTTTTT 202664 29 96.6 32 ............................C GATTGTCCGAGAAGTTGTCAAGCGGTCAGGTA 202725 29 100.0 32 ............................. AAATATGGTGCTTCAAAAGCATTAGCATATAA 202786 29 100.0 32 ............................. TAATACTGTGAAAGCTGACTTGCTGTTGCGCC 202847 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTATTCCCCACATACGTGGGGGTGATCCT # Left flank : CTAAGTACGTAGCTTCTAAGAATGGTAAAGTCGTTGACTTTGTTCGTTACGAAGTGGGCGAAGGTATCGAAAAGAAGGAAGAAGATTTCGCAGCTGAAGTCGCAGCCCAAATGAATATGTAATTCACTAGAAAACTAGTGTTTTATTGCTCATCCATATGTGTGTGGATGGGCTTTTTTAGTAATATTTTTGACGAAAAAGCTAGAATATTAACTTGATCTAGTGATGTCCACGAATTACTTTATAGAAAGAGTCAGACATACTTTGTAAACAAAACCTGACTGATACGAAAGTTGGACCAATAATCTGGAAGATTATTTAATCGTAGATTGTGTCCTGTATAAATTTTTGCTGATTTCATCAAATGTTTTATATGTATTGGTATAATAAAAATAAAGCTGAATTACAGCGTGGAAAATCTTACTTGAATTAAGTGTTTAAGTAATGATTTTTGATACTATTAATGTCTAGAAATGCTGTACTTACAGGGATATTTTACT # Right flank : TAAATAACGTTACCGAGAAAGACTTGGCAAATAGGTATTTCTTTATGAATCTTGGAAAACCTGTGGGTGTATATATAACCAAAGGTAACAAAGATCAAATAACTAGTAGAATTAAAGTTTCAATGACTGATGATAGAAAAATGTATCATGCAGTACCAGCACCGCCTAAAGACAGAAAGAAGGGATGATTTTGAGAGTGACAAAAGGAACGTTACCTAAAGACATTATACGTAAGTATAATTGGTCCTGGGTAAATGTGACAACTGACGATGACAAAACAAGAAAAATATATCTTGTTGATGTAGATGATTCTTTTGATTTATATGATCATATTAATCTTCTTTATAATTTAGATGGTAATGATAATTATGCTAATGGTGAAATAAATTTAGAGAACGTAGTTAGAATAGAACATGTAAATTAGGTGGTTACTATTATGGTATTCCCCACATACGTGGGGGTGATCCTTAATATGTTGGCAGATCAGGCAAAAAAAGAGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 250861-251478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOG010000001.1 Ligilactobacillus saerimneri strain N69 No.69_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 250861 36 100.0 36 .................................... TGGATTATCCACTAAAATGTCCTTAAAACTGTAAAC 250933 36 100.0 36 .................................... TTAGTCCAACGGCTCCAGCCTTTCTTTTCCAACTTT 251005 36 100.0 34 .................................... TCTTGTAAAATTTCTGTCGGTGTCACACTCATAA 251075 36 100.0 37 .................................... TAAACTGTCAATAGTTTTTATGGATTAATTTGCCCTA 251148 36 100.0 38 .................................... AGTCGTAGGGTTTAAACGGCATTGTCGTCGCCTACCTC 251222 36 100.0 39 .................................... AGGAGGACTTACAATGATGAATTTTGAAATCACAGTAAA 251297 36 100.0 36 .................................... TCAATGTAAAACCCCCATCTAAAACTGTCTATTTGG 251369 36 100.0 38 .................................... GTTGTTTTCATCCAGCCACTTTAAAATTTTCTTCCGCC 251443 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 99.7 37 GATGAATGAACCTCTCCGATAAAAGGAGACGAAAAC # Left flank : ACCACTTGATGGCATTTTATGATGAAATTTATCCTGGCTATGAATTCGGTCATAATGCGGGCTATGGAACGAAAGCACACCTCCAAGGCCTGGCTAATTATGGAGTATCACCGATTCATCGAAGAACCTTTGAACCAATTAAAACTGGTTTAGTCACGGGCAAATATAGTGGTTGAGCTTGCATAGTTAATGACAGAAGTATCCTATGCATTGGACGTGTTGGTCTAATGTTGTGGGGTACTTTAATTTTTGAGCAAATTAGTCTACGTGGAGTGGCTTTATCAGCAAATAATATCTTTGATCTAAATAAAACTTCCACTAATTTTTATGTGCGAGTTGAATTTATGTATTATTTCTTGTACAGTTATAGAGTAAAGTTTAGGTAAAAACCTAGCCTGAAATTTAACCACCGATCCATGGTGTAAGTAGTTAAGTGGTTAAAATTTGGGCAAGCAATATATTTAATAAAGCTTGATATAATAGTGTTTTCCCTAAGCTCT # Right flank : CCTATCTGCCCGCTTATTCCGTATTGAGTGGAGCCAGGGCGATAAATGACTTTTTCTGATAAGTACATGGACTATTAAGTGACATTTTGTCGTCCAAATCTTCCTACATAAAAACGGTTGCTATGTGAATGTGCATGGCAACCGTTTGTTTTATAAGGAAGAGAGATTATGGTGCGCGAAAAGAGAAGCATTTTGCTACCAAACGATAGGCAGTGAAAATAGTTTTGTGTGTTAGTCTTAGGACGCAATTATTTTTACGCTTCTCTTTATGTTTTTATAATAGAAATTTCGTAAATTTTTTCAGAAACAATTCAAAGTCTGTTTTTTTGTACAGTACGTTTGATAATCTATACTTGTAAGCAGGAAAAATAATTAGTCTGCGGAGGTGTGCAATGGAGAAATCAATTTATCAACAAATTTGCGATAATATAACTGACGGAATTCTTGATTGTGATTTTATCCTTCACGAGTAAGATTCCGATGATTCCGTTAAATGGGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATGAACCTCTCCGATAAAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 460201-459901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOG010000001.1 Ligilactobacillus saerimneri strain N69 No.69_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 460200 36 100.0 30 .................................... GCTACTGCCAGGATTGGCTTTTTCGATTTT 460134 36 100.0 30 .................................... CAATGTCCTTACTGTCTACTAATATCGGTG 460068 36 100.0 30 .................................... TAAAGCTGAAATTGGCGACACAGCAACACC 460002 36 100.0 30 .................................... TGTCAGAATCCATCGATAAGTTAGTTTCTA 459936 36 88.9 0 .............................G..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGTAGCCTGGCAAAGCAAATGGATAATGTAC # Left flank : TATCATATCAAACGGAAGATTAAAGACTGGAGATGCAAAGTTGCTAAAATATCTGGAAAAGAATATTACTAATGATATTCGCATGAAGATTAATGATACAGCTGAAGAACTATTTAACCTTATCCAAAATAATCTGGATGCCTATAATATTTCATTAAAAGCAAACTATGATGGTAACATTAACAGATTACTAAAATATTGTCGCATAGGATACAAAAGCAATATATCTCCATTTGAAATAGTGATTAATGAATTGAATTTGTGTTTGATGTATAATACAAATGCATGCTTGGGATTTAATAATTTGGGTCACTATTTAATGACAGATCATATATCAAAGATGGCGGAGTTTGTTGCTAAGAATAATATGCAAGTTTTGCTAATAGAATTCTCAGAAAAGTCAAATAGGAGATATTATCCTAACTGCGAATTTTATAGCATTGATAGGGATTATGTAGAATGGTATTGAAATAAAATTAACTTGAGATTAAAGAACACAG # Right flank : GATTTGCTACATATTGCTCTTTTAACTTTGTTAACTCTTCCTTTTTAAATTAGTATCAATTGACAGACAGATAAATAATTTATATACTGTGTATGTTCAAGATATGCTATAAGTAAACCAGCTATTATCAGAGAAGACGGATGCTGCGAAAGTCAATAGGGTTTCTTATAGTGCTCCTTGAGGGATTAATAATAATTGGATACAAGCTCATCTTGATTGGTGAGAATTTAAGAGGTTAACGATCAACATCGTTGCAAGTAAGGTGGTACCGCGTGTCATGCGTCCTTATTAGCAGCGGTGTTTTTTGTTTACTGATGAAAGGGTGGCAATGATGAAAAAACTAAGTAGTGCTGAAATTCGGCAGATGTATTTAGACTTTTTCAAGAGTAAAGGGCACGATGTTTTAAAGAGTGCACCATTAGTTCCGCACGATGACCCAACATTGTTGTGGATTAACTCTGGGGTCGCAACGATGGAGAAGTATTTTGATGGGTCAGTTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTAGCCTGGCAAAGCAAATGGATAATGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //