Array 1 857953-854689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029004.1 Trueperella pyogenes strain TP-2849 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 857952 29 96.6 33 ............................A CATGTGGCACCACCAACCTCCACTGGCGCCACA 857890 29 96.6 32 ............................G TGGCGTATTCGTATAGGCCGACGATTTGTAGG 857829 29 96.6 32 ............................T TACCCATTTGGCGAGCTGGCCGCGGTCTGTGG 857768 29 100.0 32 ............................. ATTGGTGACGCGGACAGTGCGCCCCACAGTAG 857707 29 96.6 32 ............................G CCCAATCTGCTTACCCGCACCAGCCAGACGCA 857646 29 100.0 32 ............................. CAACCTACCCTACCGGGACACCCACGAAACAT 857585 29 100.0 32 ............................. ATTTTTGAGGTCAGCAGGAGCAACAAAATCAG 857524 29 96.6 32 ............................G TAGTTTTGCCATCCGGATCATTGGCAAAAAGG 857463 29 96.6 32 ............................T AATTGGTGCTCGTCGGAGATGTAGCGCGTGAT 857402 29 96.6 32 ............................G GTCTCGAAGGTGGTGCTGTACGCGGTCGGCTT 857341 29 100.0 32 ............................. CAATCCCGATGCCTGCGGGCTGGAAACAAGAC 857280 29 96.6 32 ............................G CCCCAGTAGGTGAAGCGGCTGAGTCGGCACGT 857219 29 96.6 32 ............................G CCCGTACTGCTTTGATGGCATGCCGTTCGCGT 857158 29 96.6 32 ............................G TAGAAAGATCCTTGGCCGTAGAGAAGTCGGTG 857097 29 100.0 32 ............................. ACGCCGGCGCCTCACGCCGTGCCGACATCGGC 857036 29 100.0 32 ............................. ACGGTTCTTCTCCTTGCCAGTAGGCTTCGTAC 856975 29 100.0 32 ............................. CCCGTACACCAAGTTCGCGGCCTACGCCCTCT 856914 29 96.6 32 ............................G TCTGTTACATGGGTTGCGGCGTATTCGCTTGC 856853 29 100.0 32 ............................. GCCTTGGTGGATGCCGGGATTTCCCTAGGTGG 856792 29 100.0 32 ............................. TGCTCGACGTCAGCGCGGATATTTACCGCGAT 856731 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCAGCCAGGGTG 856670 29 100.0 32 ............................. CGCGTGGGCGGGTTCAACCGTTCCAGAGGCTT 856609 29 100.0 32 ............................. AATGACCACGACGATCGGGTTACAACCTACAA 856548 29 100.0 32 ............................. CTGCCCAACGGGCAAACCCGTGACGTGTACGC 856487 29 96.6 32 ............................T GATGAGCTTGCCCTTTACGTGTGGCTGCTCCT 856426 29 100.0 32 ............................. TCGTCTAGGGTGAAAACCCCTGCCTTCGCAGG 856365 29 96.6 32 ............................G GAGGGAAAGATGGACCTTTCGGAATGCGTCGC 856304 29 100.0 32 ............................. CGCGCTCGGCGCGCTCGTTACCGTTCTCACCG 856243 29 100.0 32 ............................. AGCGCCCAGCCCACCGACCACACGCCGGAAAC 856182 29 96.6 32 ............................G ACATGGTTTTGCACGGTGGTCGGCATGGTATC 856121 29 96.6 32 ............................G CTTGGCTCCTCGCGCCAGAGCATGCATCACAA 856060 29 100.0 32 ............................. CGCGAATGAAAACCACGATACGTACCCTCGCT 855999 29 96.6 32 ............................G CCGAAAAGGAGCCGCCCGGCTGGCAAGACCAC 855938 29 96.6 32 ............................G TCAAAGGGGCGTTCTCCGCCAATAACCCGTCA 855877 29 100.0 32 ............................. CGGTAGTGGCCGGGCAGGCTCACGCCGACCCG 855816 29 100.0 32 ............................. AGTGCCACGCACTACACGGCCGCCACCATCGA 855755 29 100.0 32 ............................. GCGACCTTGATCCCGCCACCCGAATAGGACAG 855694 29 93.1 32 ........T...................G CACGAGGGGTTTAGGAACGCTGTCAATACAGC 855633 29 96.6 32 ............................T GGCACAATTTGGCCACGGTTGAGCACACCGGC 855572 29 96.6 32 ............................G CGTGTGACGGCACAGATCAAGGCCGATACCGG 855511 29 96.6 32 ............................T TTTGGGTATGGTGGCCGCCAGTGGGCGGAGTT 855450 29 96.6 32 ............................G AGCACGACGTCCTATATCTGATCACCGAATAA 855389 29 96.6 32 ............................G CCATGCCGGGTATCGTGACGGTGGTGGATGAC 855328 29 100.0 32 ............................. GTCATCTCGCATATCGAGGCGACGAACCACGA 855267 29 96.6 32 ............................G TTCGCGGATCTTACGAGCGGTTTGCGTATGTC 855206 29 96.6 32 ............................T TCCACCGAAGAGAGTCCCACACGGCGAGGTCT 855145 29 100.0 32 ............................. GGGATCGAGCAGACGATTACCGCGACCGGCGT 855084 29 96.6 32 ............................G CCGGGCCTGCAGTGGTGGCGCGATATAACCGG 855023 29 100.0 32 ............................. GGTTTCTACCCACGTTTTAACTACTTCAAGTG 854962 29 100.0 32 ............................. ACGCACATGTGTGAAATGTAGCGGCGGGCGTG 854901 29 93.1 32 .............G..............G CCTCATACAATGCGCCGATCCTGCCTTTCAGT 854840 29 96.6 32 ............................G ACGCGGGAAAGCTCTTGGCCTCGTGGCCTGGT 854779 29 96.6 32 ..T.......................... GCACACGTGTCGTAAGTGTCGCGGGTCGCGCA 854718 29 93.1 0 ..........................T.A | C [854693] ========== ====== ====== ====== ============================= ================================= ================== 54 29 97.9 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCAAGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //