Array 1 33542-34576 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACEWO010000005.1 Staphylococcus chromogenes strain SC9 NODE_5_length_192892_cov_159.925, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     33542	    36	 100.0	    30	....................................	ACGAATGGCGTATTAGGCGTCTTGAAGATA 	
     33608	    36	 100.0	    30	....................................	AAAAAGCTGGATAATATTGAGCACAGTTTG 	
     33674	    36	 100.0	    31	....................................	TTAGCTACCATAGCACTATCTAATCCTGCTT	
     33741	    36	 100.0	    30	....................................	GAATGATTTTCCACCGCCTGTTTTTCCTGT 	
     33807	    36	 100.0	    30	....................................	TTACATACATGGTTACTGATATGGGAGGGT 	
     33873	    36	 100.0	    30	....................................	AATAATACAAGTATTAATAGAGACAGAGAC 	
     33939	    36	 100.0	    30	....................................	AATTAAGAGAAAAATACGCCATCGAAATCG 	
     34005	    36	 100.0	    30	....................................	GTATTGTCAGACGGGAATACGTACCCGTTT 	
     34071	    36	 100.0	    30	....................................	AAAGTAGATAACGATGTGTTAGCGGCACTT 	
     34137	    36	 100.0	    30	....................................	ATTAGATCAGTGGTAAATTCCACTTTCTCT 	
     34203	    36	 100.0	    30	....................................	TTAAAAATGGCTACACGTATAAAGACGGTT 	
     34269	    36	 100.0	    31	....................................	TGACCTGTACCTTGTCTAACATCTGTACATT	
     34336	    36	 100.0	    30	....................................	TGGACGTTTATCTTGCCTAGACTCAACCCC 	
     34402	    36	 100.0	    30	....................................	TCAGTTATGTTTAAATGCGCCATACAACTT 	
     34468	    36	 100.0	    31	....................................	CTTCATTTGGCTTGAATGATTGGATAACTAC	
     34535	    36	  94.4	     0	...........................T.......A	|                              	TTT,CA,C [34561,34568,34572]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.7	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                               	       

# Left flank :   GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//