Array 1 623-1714 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADL01000032.1 Neisseria meningitidis strain Neisseria meningitidis isolate R902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 623 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 689 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 755 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 821 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 887 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 953 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1019 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1085 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1151 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1217 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 1283 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 1349 36 100.0 30 .................................... AGCACCAACTTTGCCCTGCTGAAAATAGAG 1415 36 100.0 30 .................................... AAACCGGCGCGGGTCAGCACGGCGTGGCGA 1481 36 100.0 30 .................................... TTTTGTCTTGGTCAACCAATTTGTTGGCAG 1547 36 100.0 30 .................................... ACTTTGCTCGGGTGTACGTTTTTGTTGGTC 1613 36 100.0 30 .................................... TCCGACAACATGGCATCCAACAGACCGCCG 1679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //