Array 1 2918582-2917943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012268.1 Cronobacter muytjensii ATCC 51329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2918581 29 100.0 32 ............................. GTGCGCGCCGTACTGAACGGCAGCAAGACGCA 2918520 29 100.0 32 ............................. CCGCTCGACAGCGTGCGGGCCGCCATTGTGCC 2918459 29 100.0 32 ............................. GAACTGGCAGGCCGATGGATTGCTGAAGATGG 2918398 29 100.0 32 ............................. ACACTGATTATGCGCAGGCCGACGCGTGGCGC 2918337 29 100.0 32 ............................. TTTATATTAACGTGGAATTCGCTCCTAAATCG 2918276 29 100.0 32 ............................. ATCTGCCTGCAGGTTAATCCAGAAATCCTCGT 2918215 29 100.0 32 ............................. CATTTCCCCGTGTACGAACGCGCTTTATTCGT 2918154 29 100.0 32 ............................. TGGGGCGGCCGCGTGCGTATTATTTCCACGCA 2918093 29 100.0 32 ............................. GCTTTGACATTGTTCTGAACGACGATGAGACC 2918032 29 100.0 32 ............................. CCAGACCGATATGCGGCCGAGTACCGGGCCGA 2917971 29 86.2 0 .........A.C.......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTCATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GAACAGGGCGGTGAATAGAGACCAGAGAATACGCGCCCTCTGGCCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTTAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCCGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATTCAGTACCGCGAATCATTAACGGCGTTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3202753-3202306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012268.1 Cronobacter muytjensii ATCC 51329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3202752 28 96.4 32 .................T.......... ACTTACGCACTCACGCCCAGCGGCAACGACCA 3202692 28 96.4 32 .................T.......... TCACCCGCCAGCCGCTTATCTACCCACAGCAC 3202632 28 100.0 32 ............................ AGTAAGGTTACCCTGCTGGATAAGTATTGATC 3202572 28 100.0 32 ............................ GTCAGGAATCCCGGTTTTAGGCTCAACAGCAT 3202512 28 100.0 32 ............................ GTGAGAGTCCGCCGCTTCTACAATCAAATCTG 3202452 28 100.0 32 ............................ AGCCCGGATACCGTGATTTCGCCGGTTGCGGC 3202392 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 3202332 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCAGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGTAAAGGCTGGCTGACGGAAGAAGCGGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTGTTGATTTTTATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATCAAAATGCATACCAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATACTGCTCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATCAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCGGCGCTATTGACGCCCGACGCCCGCAGCAGCATTCAGCTTACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACCACCTGGGGCTATAACGGCTCGCTGCTCGGGCCGGCTATCAAGCTGCGCCAGGGGAAGCCGGTGAATGTCGATATCCGCAATACCCTCGCCGAAGAGACCACGGTGCACTGGCATGGCCTGGAAGTGCCGGGCGCAGTGGATGGCGGCCCCCAGGGCGTTATCGCGCCGGGGCAGACCCGCAGCGTAAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3213957-3211224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012268.1 Cronobacter muytjensii ATCC 51329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3213956 28 100.0 33 ............................ ATGTAGGTAAAGCGCAAGTAATCAATGCTCGTG 3213895 28 100.0 32 ............................ CCGCGGCGCGGGCGAGTCAGCGAGCGGCAAAC 3213835 28 100.0 32 ............................ TTTCCCGAACTCGCGAGTCGTGGGCACCAGAC 3213775 28 100.0 33 ............................ TCTGGTGATATGGCTCGCGCTTACTACTCACAT 3213714 28 100.0 32 ............................ ATAGATTCCTCTGCGGCGCGACAGGCTGTTAG 3213654 28 100.0 32 ............................ CTCAGCAGTACTGGCGCAGCACTGGCCGCACG 3213594 28 100.0 32 ............................ ATGGCGCTGGATGGCCTGAAGGACGATGATTT 3213534 28 100.0 32 ............................ AACCGCTTCAAAAATCATGCTGACGACGCTTA 3213474 28 100.0 33 ............................ CACACGCCGCGTTTAATATCGTCAATGTCCTGT 3213413 28 100.0 32 ............................ TCATAACGCTTTACAATGAGGCCAAGCATCGG 3213353 28 100.0 33 ............................ TTTCGGCAATCCGCAAGCCGCGCGACGAAGTAA 3213292 28 100.0 32 ............................ GCACACCGCGACACACAGACGCCAGGCAATAC 3213232 28 100.0 32 ............................ GATATCCGCAATCGCCTGGTCAATCTCGTATT 3213172 28 100.0 32 ............................ GCAGGGAACACCGCGGCGGCATCCGTCACGCC 3213112 28 100.0 32 ............................ AGCTCGCTCGCTCTGACGAGTGGCGGTGGGCA 3213052 28 100.0 32 ............................ ACACATCCTAAATCGACACATAAAATGATAAT 3212992 28 100.0 32 ............................ CAAATGTCATGTTGACTGTATTGTCATCAGAT 3212932 28 100.0 32 ............................ ATGAAAGATATAGCGATTAGAACGGTGCTTGA 3212872 28 100.0 32 ............................ TCAACGCCACTTTTGAGCGTTATTCCGTGCCA 3212812 28 100.0 32 ............................ AGCAATCAAGGCTTACAGCGAACTGCAACAGG 3212752 28 100.0 32 ............................ TGACTCTGGCTATAGCTGGGAATCGCAGACAC 3212692 28 100.0 32 ............................ TCGCCGCTGCGAGATTAATGAACTAATGGACG 3212632 28 100.0 32 ............................ TCCGGCGGCGTCTACTATCTGAACTGGGGTGA 3212572 28 100.0 32 ............................ TACCTCACTGGCGCGCCGCTAACTCTAAAGAT 3212512 28 100.0 32 ............................ CGGCTGACGGCGTTAAGCGCCCGCCACAACGC 3212452 28 100.0 32 ............................ CATTCTCTTCAGCCAGATGCAGGCCATAGGCA 3212392 28 100.0 32 ............................ TCTGTGGATAACTTTTCATCCGGTAACGCAGT 3212332 28 100.0 32 ............................ CCGGCGGCCAGCTCTGGGCGATTGCCGTTCCC 3212272 28 100.0 32 ............................ TGTCGCTGTTACAGCGCCGGATATGACGGCAT 3212212 28 100.0 32 ............................ AAACGGCAGAACCGCCACATAGAAACGGCAGA 3212152 28 100.0 32 ............................ TATCTTCACTCGATGCAGATCGGGGAGCAATT 3212092 28 100.0 32 ............................ ATGTCCGCGGTCGCTCGCGCCTTCAACTTCAA 3212032 28 100.0 33 ............................ CAGCACCGCCAGCAGTGGGCAAAAAATCGCATC 3211971 28 100.0 32 ............................ CGACACCGGGCGCACTGACGTGCCGGGTATCG 3211911 28 100.0 32 ............................ GCAGGGCGGTGTGCGTTTATGACGACGGGCGC 3211851 28 100.0 32 ............................ ACCCGACCCCCACCAGCGGAATACCTGCTGAC 3211791 28 100.0 32 ............................ GCCCGCAGGCACCGAGCCAGCTAAAGGCTGAA 3211731 28 100.0 32 ............................ GCCAGCGCGTCGCGCTCGCCCTCGACTTTCGC 3211671 28 100.0 32 ............................ CACTCCTCATATTCCGACTCAGGCCAGCCGAG 3211611 28 100.0 33 ............................ AAACGCCACGGCATTAAGCCGAACCCGCTCTAT 3211550 28 100.0 32 ............................ TCCAATTAATTGTGGCCGTAGCTCGCGCGCCC 3211490 28 100.0 32 ............................ CGACAGACGAGGAAGACGACGAGGTGCTGCAC 3211430 28 100.0 32 ............................ TCGGGCGCTACGGCATCCCCCCAGACCGCGTA 3211370 28 100.0 32 ............................ AGTCAGGCTCGTTGCCCTCCGGGATAACTGCT 3211310 28 100.0 32 ............................ GCACCGTACCTCGCAGCACCGCCCGCGCCGTT 3211250 27 89.3 0 .......A............-...A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCAAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAACGAAAAACCCGCAGGTTGATATGCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACCACCGCTGTGAAATCTGCCGCTTAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACGTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCATTTTTAATGCCATCATCGACGGCAAAAGCCCATACCTAAAGATTAATAAATAAAATTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGACCGTGTATTTGGGCTGATATATTTTAAAAATTAAAAGGATGTCACGATATGGTGCCTTAATTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATACTTCCTCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTTCTGGTTAATGGCGGCCGGGTGGAATATGTCACCGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTCACACAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //